Wall clock time and date at job start Thu Apr 9 2020 12:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00047 * 2 1 4 4 C 1.53000 * 109.47362 * 180.02562 * 3 2 1 5 5 N 1.46905 * 109.47172 * 65.01886 * 4 3 2 6 6 C 1.46844 * 110.99913 * 200.01588 * 5 4 3 7 7 C 1.53037 * 109.52235 * 174.16373 * 6 5 4 8 8 C 1.53114 * 109.28088 * 59.17742 * 7 6 5 9 9 N 1.46897 * 109.52507 * 182.44157 * 8 7 6 10 10 C 1.46898 * 111.00093 * 274.68310 * 9 8 7 11 11 C 1.50702 * 109.47183 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99902 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99842 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00259 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99935 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46971 * 89.99728 * 15 13 11 17 17 H 1.48499 * 109.47422 * 209.99647 * 15 13 11 18 18 H 1.48504 * 109.47199 * 329.99732 * 15 13 11 19 19 C 1.53126 * 109.16153 * 302.34790 * 8 7 6 20 20 C 1.46849 * 110.99664 * 75.80542 * 5 4 3 21 21 H 1.08997 * 109.46881 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47210 * 300.00048 * 1 2 3 23 23 H 1.09000 * 109.47219 * 59.99941 * 1 2 3 24 24 H 1.09001 * 109.47158 * 59.99546 * 3 2 1 25 25 H 1.09004 * 109.47020 * 299.99831 * 3 2 1 26 26 H 1.08995 * 109.47279 * 185.01922 * 4 3 2 27 27 H 1.09004 * 109.46954 * 305.02200 * 4 3 2 28 28 H 1.09001 * 109.46077 * 294.18012 * 6 5 4 29 29 H 1.08998 * 109.46144 * 54.14762 * 6 5 4 30 30 H 1.09006 * 109.50047 * 299.23638 * 7 6 5 31 31 H 1.08993 * 109.50440 * 179.12232 * 7 6 5 32 32 H 1.09003 * 109.57206 * 62.27954 * 8 7 6 33 33 H 1.00907 * 110.99885 * 150.73023 * 9 8 7 34 34 H 1.09002 * 109.47148 * 299.99838 * 10 9 8 35 35 H 1.08999 * 109.47152 * 60.00181 * 10 9 8 36 36 H 0.97008 * 120.00163 * 180.02562 * 14 13 11 37 37 H 1.08995 * 109.50214 * 297.71013 * 19 8 7 38 38 H 1.09002 * 109.50549 * 177.59308 * 19 8 7 39 39 H 1.08995 * 109.46376 * 305.85541 * 20 5 4 40 40 H 1.08996 * 109.46418 * 65.83392 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9769 0.5632 -1.2564 6 6 5.3267 0.0014 -1.1194 7 6 5.6949 -0.7617 -2.3938 8 6 5.6383 0.1935 -3.5892 9 7 5.9337 -0.5464 -4.8233 10 6 7.3823 -0.6330 -5.0512 11 6 7.6460 -1.3965 -6.3235 12 1 6.8200 -1.7795 -6.9044 13 6 8.9416 -1.6069 -6.7453 14 7 9.9474 -1.1409 -6.0377 15 14 9.2684 -2.5539 -8.3219 16 1 9.3125 -1.6090 -9.4668 17 1 10.5695 -3.2615 -8.2138 18 1 8.1830 -3.5440 -8.5387 19 6 4.2360 0.8018 -3.6805 20 6 3.9102 1.5196 -2.3688 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 1.6885 1.8464 0.8899 25 1 1.6886 1.8464 -0.8900 26 1 3.9785 2.1765 0.0893 27 1 3.8514 0.5679 0.8407 28 1 6.0416 0.8086 -0.9600 29 1 5.3521 -0.6793 -0.2684 30 1 4.9884 -1.5777 -2.5463 31 1 6.7027 -1.1654 -2.2980 32 1 6.3722 0.9884 -3.4564 33 1 5.4673 -0.1297 -5.6152 34 1 7.7971 0.3713 -5.1381 35 1 7.8518 -1.1488 -4.2136 36 1 10.8590 -1.2886 -6.3346 37 1 3.5066 0.0105 -3.8533 38 1 4.2017 1.5152 -4.5039 39 1 2.9068 1.9416 -2.4252 40 1 4.6318 2.3196 -2.2037 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336746310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:17:07 Heat of formation + Delta-G solvation = -72.305233 kcal Electronic energy + Delta-G solvation = -17787.393942 eV Core-core repulsion = 15021.725815 eV Total energy + Delta-G solvation = -2765.668127 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.30242 -38.60214 -36.92262 -34.87257 -32.83410 -31.87369 -29.96983 -28.09190 -26.86812 -24.90259 -23.96409 -23.28666 -22.05198 -20.68345 -18.59187 -17.47104 -17.26505 -16.71405 -16.47574 -16.07893 -15.90420 -15.67660 -15.35620 -14.89756 -14.64401 -14.09997 -13.94934 -13.69067 -13.37045 -13.09025 -12.96080 -12.70443 -12.60993 -12.47169 -12.22569 -12.11271 -11.91113 -11.79294 -11.61326 -11.23127 -11.06463 -10.66615 -10.46125 -9.20760 -9.11437 -8.23232 -6.34790 1.40491 1.42747 1.54765 2.39788 2.88804 3.03706 3.09800 3.48868 3.83892 3.91951 4.13773 4.24083 4.31894 4.32705 4.44977 4.49845 4.55018 4.62149 4.63959 4.65108 4.70245 4.80985 4.87432 4.92656 4.94962 5.02250 5.05464 5.16576 5.24076 5.29265 5.42807 5.63848 6.03261 6.13958 6.16885 6.45228 6.47580 6.73894 6.90074 7.36458 8.88523 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.051454 B = 0.003933 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.046200 B = 7117.248354 C = 7290.911427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.068 3.932 4 C 0.053 3.947 5 N -0.541 5.541 6 C 0.069 3.931 7 C -0.096 4.096 8 C 0.084 3.916 9 N -0.685 5.685 10 C 0.212 3.788 11 C -0.537 4.537 12 H 0.064 0.936 13 C 0.000 4.000 14 N -0.935 5.935 15 Si 0.975 3.025 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.264 1.264 19 C -0.106 4.106 20 C 0.064 3.936 21 H 0.086 0.914 22 H 0.052 0.948 23 H 0.043 0.957 24 H 0.070 0.930 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.030 0.970 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.041 0.959 32 H 0.013 0.987 33 H 0.335 0.665 34 H -0.044 1.044 35 H -0.002 1.002 36 H 0.265 0.735 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.943 7.311 12.476 22.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.325 6.325 3 C -0.009 4.009 4 C -0.075 4.075 5 N -0.266 5.266 6 C -0.059 4.059 7 C -0.135 4.135 8 C -0.026 4.026 9 N -0.315 5.315 10 C 0.085 3.915 11 C -0.575 4.575 12 H 0.083 0.917 13 C -0.198 4.198 14 N -0.575 5.575 15 Si 0.799 3.201 16 H -0.195 1.195 17 H -0.207 1.207 18 H -0.189 1.189 19 C -0.145 4.145 20 C -0.064 4.064 21 H 0.105 0.895 22 H 0.070 0.930 23 H 0.062 0.938 24 H 0.088 0.912 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.099 0.901 28 H 0.048 0.952 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.031 0.969 33 H 0.152 0.848 34 H -0.026 1.026 35 H 0.017 0.983 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.111 0.889 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -17.002 6.151 12.683 22.086 hybrid contribution 1.336 1.271 -0.844 2.028 sum -15.666 7.422 11.840 20.992 Atomic orbital electron populations 1.22840 0.80404 1.03217 1.00457 1.87970 1.20498 1.28548 1.95436 1.22623 0.92809 0.84692 1.00768 1.22214 0.94481 0.98920 0.91867 1.61845 1.24524 1.35406 1.04817 1.21981 0.88571 0.97805 0.97552 1.21454 1.00087 0.98395 0.93576 1.21586 0.96208 0.93474 0.91298 1.60576 1.10830 1.55442 1.04686 1.19194 0.84078 0.92818 0.95458 1.21569 0.92653 1.35193 1.08094 0.91737 1.25988 0.95747 0.96845 1.01233 1.70100 0.99377 1.47339 1.40719 0.85297 0.77627 0.78610 0.78539 1.19537 1.20654 1.18868 1.21673 0.95190 1.00001 0.97600 1.22072 1.01510 0.92711 0.90111 0.89511 0.92992 0.93834 0.91153 0.93011 0.91662 0.90053 0.95199 0.89795 0.91772 0.94014 0.96866 0.84793 1.02624 0.98348 0.92597 0.90988 0.90942 0.88945 0.94901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.66 16 2 O -0.41 -9.07 10.65 -148.98 -1.59 -10.66 16 3 C 0.07 1.17 6.13 71.98 0.44 1.61 16 4 C 0.05 1.02 5.39 86.30 0.47 1.48 16 5 N -0.54 -13.74 4.53 -896.37 -4.06 -17.80 16 6 C 0.07 1.96 5.43 86.33 0.47 2.43 16 7 C -0.10 -3.48 5.59 30.64 0.17 -3.31 16 8 C 0.08 3.19 2.56 45.00 0.12 3.30 16 9 N -0.68 -31.16 6.30 -495.17 -3.12 -34.28 16 10 C 0.21 11.90 5.24 85.56 0.45 12.35 16 11 C -0.54 -31.67 9.32 25.60 0.24 -31.43 16 12 H 0.06 3.69 7.81 -2.91 -0.02 3.67 16 13 C 0.00 -0.01 5.46 84.65 0.46 0.46 16 14 N -0.94 -57.84 13.29 21.44 0.28 -57.56 16 15 Si 0.98 45.20 29.54 68.60 2.03 47.23 16 16 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 18 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 19 C -0.11 -3.12 5.36 30.65 0.16 -2.96 16 20 C 0.06 1.55 5.29 86.33 0.46 2.00 16 21 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 23 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 25 H 0.05 0.84 6.70 -2.39 -0.02 0.83 16 26 H 0.07 1.05 8.00 -2.39 -0.02 1.03 16 27 H 0.08 1.56 7.79 -2.38 -0.02 1.55 16 28 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.08 2.18 7.93 -2.39 -0.02 2.16 16 30 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 31 H 0.04 1.68 7.54 -2.39 -0.02 1.66 16 32 H 0.01 0.55 7.80 -2.39 -0.02 0.53 16 33 H 0.33 14.32 8.35 -89.69 -0.75 13.57 16 34 H -0.04 -2.64 8.06 -2.39 -0.02 -2.66 16 35 H 0.00 -0.10 7.51 -2.39 -0.02 -0.11 16 36 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 37 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.09 1.84 6.65 -2.39 -0.02 1.82 16 40 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -68.35 318.13 -1.54 -69.89 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.24 Total: 15.59 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: 4.68 Total: -12.41 kcal Atomic # 7 Polarization: -102.74 SS G_CDS: -6.90 Total: -109.64 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -1.59 Total: -10.66 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -68.35 -1.54 -69.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336746310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.420 kcal (2) G-P(sol) polarization free energy of solvation -68.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds