Wall clock time and date at job start Thu Apr 9 2020 12:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46755 * 90.00221 * 8 6 4 10 10 H 1.48498 * 109.46866 * 210.00208 * 8 6 4 11 11 H 1.48496 * 109.47178 * 330.00271 * 8 6 4 12 12 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 13 13 C 1.46904 * 110.99716 * 274.99847 * 12 2 1 14 14 C 1.50700 * 109.47105 * 179.97438 * 13 12 2 15 15 C 1.35302 * 126.04154 * 104.71229 * 14 13 12 16 16 N 1.34956 * 107.76322 * 179.89660 * 15 14 13 17 17 C 1.46499 * 126.02405 * 180.11590 * 16 15 14 18 18 N 1.40081 * 107.94571 * 0.37097 * 16 15 14 19 19 C 1.30899 * 108.20369 * 359.76899 * 18 16 15 20 20 Cl 1.73594 * 125.91134 * 179.97438 * 19 18 16 21 21 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 22 22 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 23 23 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 24 24 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 25 25 H 1.00900 * 110.99634 * 38.94573 * 12 2 1 26 26 H 1.08996 * 109.46868 * 300.00084 * 13 12 2 27 27 H 1.09007 * 109.46973 * 59.99616 * 13 12 2 28 28 H 1.07997 * 126.12097 * 0.02562 * 15 14 13 29 29 H 1.08999 * 109.47650 * 270.27059 * 17 16 15 30 30 H 1.08993 * 109.47387 * 30.27503 * 17 16 15 31 31 H 1.09006 * 109.46560 * 150.27023 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5874 -0.5218 3.5560 15 6 3.8278 -0.4277 4.0882 16 7 3.8798 -1.2475 5.1590 17 6 5.0382 -1.4520 6.0322 18 7 2.6326 -1.8728 5.2847 19 6 1.8581 -1.4374 4.3235 20 17 0.2116 -1.9136 4.0478 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 0.7089 1.1613 -3.4844 25 1 1.4495 -1.4979 1.4101 26 1 2.7589 1.0461 2.1182 27 1 1.0871 0.6164 2.5525 28 1 4.6319 0.1939 3.7228 29 1 5.6474 -2.2676 5.6427 30 1 5.6326 -0.5391 6.0670 31 1 4.6963 -1.7015 7.0367 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663170596.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:17:12 Heat of formation + Delta-G solvation = 73.493787 kcal Electronic energy + Delta-G solvation = -15154.694355 eV Core-core repulsion = 12498.965613 eV Total energy + Delta-G solvation = -2655.728742 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 243.083 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.17484 -36.61197 -35.97332 -33.37805 -32.38366 -30.64182 -28.33871 -26.51101 -25.07370 -23.63897 -21.20389 -20.25205 -20.01795 -16.97814 -16.09696 -15.65281 -14.94907 -14.70240 -14.37575 -13.68675 -13.60208 -13.12104 -13.00075 -12.59929 -11.99497 -11.63654 -11.59358 -11.46805 -11.30985 -10.89768 -10.69623 -10.55914 -10.21910 -10.06658 -9.83456 -9.18349 -8.93626 -8.32909 -8.29944 -7.10277 -5.92033 -3.94792 1.61850 1.80304 2.69382 2.93295 3.36838 3.42890 3.47796 4.48645 4.51348 4.84999 4.97962 5.21575 5.36092 5.39448 5.51420 5.67947 5.80052 6.16994 6.36608 6.52689 6.79263 6.93442 6.96439 7.19356 7.45294 7.52043 7.82686 7.96518 8.35604 8.64054 8.70847 9.12749 9.70294 11.14885 Molecular weight = 243.08amu Principal moments of inertia in cm(-1) A = 0.031072 B = 0.005697 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.903573 B = 4913.571545 C = 5378.588967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.211 3.789 3 H 0.034 0.966 4 C -0.492 4.492 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.896 3.104 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.679 5.679 13 C 0.132 3.868 14 C -0.200 4.200 15 C 0.073 3.927 16 N -0.370 5.370 17 C 0.106 3.894 18 N -0.290 5.290 19 C 0.128 3.872 20 Cl 0.004 6.996 21 H 0.088 0.912 22 H 0.006 0.994 23 H 0.027 0.973 24 H 0.259 0.741 25 H 0.327 0.673 26 H 0.073 0.927 27 H 0.030 0.970 28 H 0.183 0.817 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.148 -1.674 15.495 16.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.103 3.897 3 H 0.052 0.948 4 C -0.531 4.531 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.724 3.276 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.309 5.309 13 C 0.001 3.999 14 C -0.212 4.212 15 C -0.072 4.072 16 N -0.155 5.155 17 C -0.036 4.036 18 N -0.116 5.116 19 C -0.063 4.063 20 Cl 0.032 6.968 21 H 0.106 0.894 22 H 0.025 0.975 23 H 0.046 0.954 24 H 0.068 0.932 25 H 0.143 0.857 26 H 0.092 0.908 27 H 0.048 0.952 28 H 0.200 0.800 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.821 -2.282 16.254 17.415 hybrid contribution -0.853 0.083 -1.346 1.595 sum 4.969 -2.199 14.908 15.867 Atomic orbital electron populations 1.22422 1.00715 0.99202 1.00445 1.19184 0.89630 0.94398 0.86473 0.94834 1.21170 1.29997 1.12294 0.89617 0.92022 1.24939 0.95436 0.95214 0.98954 1.69889 1.37505 1.23218 1.23208 0.86530 0.79225 0.79237 0.82572 1.20893 1.21443 1.19949 1.60884 1.58170 1.08966 1.02918 1.20178 0.98346 0.94385 0.86976 1.20099 0.93542 1.05208 1.02375 1.22352 0.98679 0.96746 0.89461 1.48175 1.09845 1.33696 1.23750 1.21869 0.84224 1.03237 0.94223 1.77259 0.90940 1.20622 1.22772 1.22588 0.89151 0.98325 0.96279 1.98390 1.12208 1.91201 1.95015 0.89365 0.97499 0.95408 0.93164 0.85671 0.90843 0.95169 0.80043 0.90601 0.89193 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.13 8.94 37.16 0.33 -3.79 16 2 C 0.21 5.34 2.57 -68.86 -0.18 5.17 16 3 H 0.03 0.92 7.80 -51.93 -0.40 0.51 16 4 C -0.49 -13.76 8.84 -34.44 -0.30 -14.07 16 5 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -25.83 11.32 55.43 0.63 -25.20 16 8 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.68 -14.84 6.22 -109.21 -0.68 -15.52 16 13 C 0.13 2.42 5.83 -4.97 -0.03 2.39 16 14 C -0.20 -3.27 5.62 -105.02 -0.59 -3.86 16 15 C 0.07 0.98 11.39 -17.22 -0.20 0.78 16 16 N -0.37 -4.75 4.01 -68.17 -0.27 -5.02 16 17 C 0.11 0.78 11.47 59.85 0.69 1.46 16 18 N -0.29 -4.62 12.58 32.94 0.41 -4.20 16 19 C 0.13 2.13 7.84 -17.30 -0.14 1.99 16 20 Cl 0.00 0.07 29.13 -51.86 -1.51 -1.44 16 21 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 22 H 0.01 0.14 7.45 -51.93 -0.39 -0.25 16 23 H 0.03 0.66 8.13 -51.93 -0.42 0.23 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.33 7.09 8.43 -39.29 -0.33 6.76 16 26 H 0.07 1.30 8.04 -51.93 -0.42 0.88 16 27 H 0.03 0.57 7.44 -51.93 -0.39 0.18 16 28 H 0.18 1.82 8.06 -52.49 -0.42 1.39 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 283.88 15.07 4.28 4.28 Total: -1.00 -31.39 283.88 -6.57 -37.96 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -3.90 Total: 0.98 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -0.51 Total: -8.50 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: 0.09 Total: -49.95 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 17 Polarization: 0.07 SS G_CDS: -1.51 Total: -1.44 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.39 -6.57 -37.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663170596.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.458 kcal (2) G-P(sol) polarization free energy of solvation -31.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds