Wall clock time and date at job start Thu Apr 9 2020 12:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46755 * 90.00221 * 8 6 4 10 10 H 1.48498 * 109.46866 * 210.00208 * 8 6 4 11 11 H 1.48496 * 109.47178 * 330.00271 * 8 6 4 12 12 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 13 13 C 1.46904 * 110.99716 * 274.99847 * 12 2 1 14 14 C 1.50700 * 109.47105 * 179.97438 * 13 12 2 15 15 C 1.35302 * 126.04154 * 104.71229 * 14 13 12 16 16 N 1.34956 * 107.76322 * 179.89660 * 15 14 13 17 17 C 1.46499 * 126.02405 * 180.11590 * 16 15 14 18 18 N 1.40081 * 107.94571 * 0.37097 * 16 15 14 19 19 C 1.30899 * 108.20369 * 359.76899 * 18 16 15 20 20 Cl 1.73594 * 125.91134 * 179.97438 * 19 18 16 21 21 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 22 22 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 23 23 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 24 24 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 25 25 H 1.00900 * 110.99634 * 38.94573 * 12 2 1 26 26 H 1.08996 * 109.46868 * 300.00084 * 13 12 2 27 27 H 1.09007 * 109.46973 * 59.99616 * 13 12 2 28 28 H 1.07997 * 126.12097 * 0.02562 * 15 14 13 29 29 H 1.08999 * 109.47650 * 270.27059 * 17 16 15 30 30 H 1.08993 * 109.47387 * 30.27503 * 17 16 15 31 31 H 1.09006 * 109.46560 * 150.27023 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5874 -0.5218 3.5560 15 6 3.8278 -0.4277 4.0882 16 7 3.8798 -1.2475 5.1590 17 6 5.0382 -1.4520 6.0322 18 7 2.6326 -1.8728 5.2847 19 6 1.8581 -1.4374 4.3235 20 17 0.2116 -1.9136 4.0478 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 0.7089 1.1613 -3.4844 25 1 1.4495 -1.4979 1.4101 26 1 2.7589 1.0461 2.1182 27 1 1.0871 0.6164 2.5525 28 1 4.6319 0.1939 3.7228 29 1 5.6474 -2.2676 5.6427 30 1 5.6326 -0.5391 6.0670 31 1 4.6963 -1.7015 7.0367 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663170596.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:17:12 Heat of formation + Delta-G solvation = 51.955415 kcal Electronic energy + Delta-G solvation = -15155.628329 eV Core-core repulsion = 12498.965613 eV Total energy + Delta-G solvation = -2656.662716 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 243.083 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.27342 -37.90786 -37.64746 -34.87364 -33.81524 -32.13146 -29.83176 -27.63826 -27.16452 -25.07610 -22.37529 -21.89438 -21.40709 -18.48849 -17.70722 -16.79448 -16.58915 -16.01532 -15.91623 -15.24715 -14.99206 -14.29417 -14.09297 -13.99921 -13.52868 -13.23774 -13.14028 -12.81178 -12.60855 -12.56683 -12.53276 -12.36704 -12.11046 -11.88236 -11.42910 -10.99041 -10.43525 -10.28367 -9.51002 -8.84746 -8.04120 -6.14922 0.52100 0.72543 1.45886 1.46240 1.48844 1.57915 1.97434 2.48684 3.23843 3.58184 3.90475 4.01889 4.36513 4.41805 4.48374 4.61165 4.73508 4.75430 4.86131 4.93756 5.07270 5.16927 5.24833 5.47758 5.74404 5.87710 6.00965 6.33205 6.41017 6.72203 6.86489 6.99751 7.54792 9.01062 Molecular weight = 243.08amu Principal moments of inertia in cm(-1) A = 0.031072 B = 0.005697 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.903573 B = 4913.571545 C = 5378.588967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.216 3.784 3 H 0.010 0.990 4 C -0.512 4.512 5 H 0.052 0.948 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.959 3.041 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.271 1.271 12 N -0.681 5.681 13 C 0.140 3.860 14 C -0.233 4.233 15 C 0.093 3.907 16 N -0.360 5.360 17 C 0.093 3.907 18 N -0.314 5.314 19 C 0.113 3.887 20 Cl -0.002 7.002 21 H 0.062 0.938 22 H 0.024 0.976 23 H 0.026 0.974 24 H 0.260 0.740 25 H 0.326 0.674 26 H 0.078 0.922 27 H 0.023 0.977 28 H 0.219 0.781 29 H 0.089 0.911 30 H 0.125 0.875 31 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.829 -1.916 16.168 17.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.107 3.893 3 H 0.027 0.973 4 C -0.551 4.551 5 H 0.070 0.930 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.785 3.215 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.195 1.195 12 N -0.311 5.311 13 C 0.010 3.990 14 C -0.245 4.245 15 C -0.055 4.055 16 N -0.144 5.144 17 C -0.046 4.046 18 N -0.141 5.141 19 C -0.078 4.078 20 Cl 0.025 6.975 21 H 0.081 0.919 22 H 0.043 0.957 23 H 0.045 0.955 24 H 0.069 0.931 25 H 0.143 0.857 26 H 0.096 0.904 27 H 0.041 0.959 28 H 0.236 0.764 29 H 0.107 0.893 30 H 0.143 0.857 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.512 -2.540 16.966 18.728 hybrid contribution -1.283 0.171 -1.445 1.940 sum 6.229 -2.369 15.522 16.892 Atomic orbital electron populations 1.22234 1.00309 0.98920 1.00011 1.18954 0.89825 0.93027 0.87455 0.97252 1.21442 1.30269 1.12305 0.91095 0.92968 1.25680 0.95538 0.95870 1.01732 1.70009 1.38132 1.24220 1.23881 0.85546 0.78735 0.78197 0.79032 1.20415 1.20892 1.19549 1.60786 1.57646 1.09365 1.03263 1.20065 0.98284 0.94069 0.86608 1.19971 0.95171 1.06782 1.02620 1.22852 0.98299 0.95788 0.88538 1.48651 1.09842 1.32165 1.23730 1.22373 0.82789 1.05689 0.93744 1.77198 0.92318 1.21591 1.22967 1.22692 0.89268 0.98920 0.96880 1.98375 1.12723 1.91273 1.95086 0.91899 0.95682 0.95493 0.93063 0.85720 0.90385 0.95914 0.76435 0.89279 0.85665 0.88591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.68 8.94 71.98 0.64 -7.04 16 2 C 0.22 11.06 2.57 44.17 0.11 11.18 16 3 H 0.01 0.53 7.80 -2.39 -0.02 0.51 16 4 C -0.51 -28.83 8.84 25.60 0.23 -28.61 16 5 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 6 C 0.01 0.55 5.30 84.65 0.45 0.99 16 7 N -0.92 -53.36 11.32 21.45 0.24 -53.12 16 8 Si 0.96 44.34 29.54 68.60 2.03 46.36 16 9 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 12 N -0.68 -29.70 6.22 -499.43 -3.11 -32.81 16 13 C 0.14 5.06 5.83 85.56 0.50 5.56 16 14 C -0.23 -7.34 5.62 -20.12 -0.11 -7.45 16 15 C 0.09 2.22 11.39 83.54 0.95 3.17 16 16 N -0.36 -8.24 4.01 -369.58 -1.48 -9.72 16 17 C 0.09 1.02 11.47 127.77 1.47 2.49 16 18 N -0.31 -9.57 12.58 -49.69 -0.62 -10.19 16 19 C 0.11 3.67 7.84 85.25 0.67 4.34 16 20 Cl 0.00 -0.07 29.13 -2.72 -0.08 -0.15 16 21 H 0.06 3.44 6.07 -2.39 -0.01 3.42 16 22 H 0.02 1.10 7.45 -2.39 -0.02 1.08 16 23 H 0.03 1.28 8.13 -2.38 -0.02 1.26 16 24 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 25 H 0.33 14.20 8.43 -89.69 -0.76 13.45 16 26 H 0.08 2.70 8.04 -2.39 -0.02 2.68 16 27 H 0.02 0.85 7.44 -2.38 -0.02 0.83 16 28 H 0.22 3.44 8.06 -2.91 -0.02 3.42 16 29 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.13 0.54 8.14 -2.39 -0.02 0.53 16 31 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 Total: -1.00 -67.35 283.88 2.26 -65.09 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 0.38 Total: 9.90 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: 4.90 Total: -15.36 kcal Atomic # 7 Polarization: -100.87 SS G_CDS: -4.97 Total: -105.84 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -0.08 Total: -0.15 kcal Total: -67.35 2.26 -65.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663170596.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.044 kcal (2) G-P(sol) polarization free energy of solvation -67.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds