Wall clock time and date at job start Thu Apr 9 2020 12:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 C 1.50692 * 109.47298 * 120.00156 * 2 1 3 5 5 H 1.08004 * 120.00412 * 119.99885 * 4 2 1 6 6 C 1.37879 * 120.00142 * 300.00195 * 4 2 1 7 7 N 1.31514 * 119.99996 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00298 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46769 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47176 * 119.99714 * 8 6 4 11 11 H 1.48495 * 109.47112 * 240.00028 * 8 6 4 12 12 N 1.46901 * 109.47269 * 240.00137 * 2 1 3 13 13 C 1.46905 * 110.99870 * 84.99904 * 12 2 1 14 14 C 1.50697 * 109.47066 * 180.02562 * 13 12 2 15 15 C 1.35305 * 126.04471 * 104.71540 * 14 13 12 16 16 N 1.34948 * 107.76740 * 179.89666 * 15 14 13 17 17 C 1.46498 * 126.02693 * 180.10282 * 16 15 14 18 18 N 1.40086 * 107.94636 * 0.36722 * 16 15 14 19 19 C 1.30891 * 108.20257 * 359.77169 * 18 16 15 20 20 Cl 1.73596 * 125.91501 * 180.02562 * 19 18 16 21 21 H 1.09006 * 109.47343 * 299.99942 * 1 2 3 22 22 H 1.09004 * 109.47587 * 59.99932 * 1 2 3 23 23 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 24 24 H 0.97004 * 120.00312 * 179.97438 * 7 6 4 25 25 H 1.00901 * 111.00067 * 208.95080 * 12 2 1 26 26 H 1.09001 * 109.46798 * 300.00327 * 13 12 2 27 27 H 1.08998 * 109.46961 * 60.00043 * 13 12 2 28 28 H 1.08004 * 126.11722 * 0.02895 * 15 14 13 29 29 H 1.08996 * 109.47264 * 270.28332 * 17 16 15 30 30 H 1.09000 * 109.47055 * 30.28766 * 17 16 15 31 31 H 1.09004 * 109.47240 * 150.28259 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.1465 -2.2870 3.6037 10 1 3.1466 -0.1875 4.8165 11 1 1.1661 -1.5868 4.8160 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5873 -0.5216 -3.5560 15 6 1.8397 -0.9380 -4.6042 16 7 2.6618 -1.5599 -5.4750 17 6 2.2684 -2.1631 -6.7508 18 7 3.9567 -1.5326 -4.9412 19 6 3.9115 -0.9100 -3.7907 20 17 5.2604 -0.6161 -2.7383 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7088 1.1613 3.4845 25 1 2.9173 -1.1204 -1.0288 26 1 1.0870 0.6164 -2.5525 27 1 2.7588 1.0463 -2.1182 28 1 0.7758 -0.7958 -4.7236 29 1 1.9936 -3.2055 -6.5905 30 1 1.4161 -1.6215 -7.1612 31 1 3.1029 -2.1107 -7.4501 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663170597.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:17:13 Heat of formation + Delta-G solvation = 72.566088 kcal Electronic energy + Delta-G solvation = -15147.993473 eV Core-core repulsion = 12492.224502 eV Total energy + Delta-G solvation = -2655.768970 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 243.083 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.16857 -36.57206 -35.88392 -33.38332 -32.39510 -30.59645 -28.39904 -26.57502 -25.20323 -23.63443 -21.15956 -20.27044 -19.65013 -17.01393 -16.24027 -15.62949 -14.93418 -14.86342 -14.23591 -13.62724 -13.55292 -13.25461 -12.99435 -12.66955 -12.15029 -11.71640 -11.50978 -11.37888 -11.15805 -10.88586 -10.70280 -10.30926 -10.21988 -10.06431 -9.90380 -9.17353 -8.77305 -8.45384 -8.28540 -7.15592 -5.97475 -4.02938 1.64200 1.80668 2.70198 2.94340 3.32607 3.40328 3.45484 4.45442 4.50180 4.84184 4.97532 5.21059 5.33896 5.36827 5.51451 5.68846 5.81100 6.17863 6.39768 6.52290 6.93187 6.95371 7.19262 7.28820 7.52687 7.56705 7.84723 7.96480 8.33444 8.47731 8.75205 9.08444 9.62797 11.08944 Molecular weight = 243.08amu Principal moments of inertia in cm(-1) A = 0.032404 B = 0.005809 C = 0.005244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.888176 B = 4818.691388 C = 5338.026120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.210 3.790 3 H 0.002 0.998 4 C -0.514 4.514 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.684 5.684 13 C 0.132 3.868 14 C -0.200 4.200 15 C 0.072 3.928 16 N -0.371 5.371 17 C 0.106 3.894 18 N -0.290 5.290 19 C 0.128 3.872 20 Cl 0.007 6.993 21 H 0.080 0.920 22 H 0.004 0.996 23 H 0.030 0.970 24 H 0.259 0.741 25 H 0.332 0.668 26 H 0.072 0.928 27 H 0.031 0.969 28 H 0.182 0.818 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.815 -2.558 -16.179 16.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.103 3.897 3 H 0.019 0.981 4 C -0.553 4.553 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.316 5.316 13 C 0.002 3.998 14 C -0.212 4.212 15 C -0.074 4.074 16 N -0.155 5.155 17 C -0.035 4.035 18 N -0.116 5.116 19 C -0.063 4.063 20 Cl 0.034 6.966 21 H 0.098 0.902 22 H 0.023 0.977 23 H 0.050 0.950 24 H 0.069 0.931 25 H 0.150 0.850 26 H 0.090 0.910 27 H 0.049 0.951 28 H 0.199 0.801 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.916 -3.311 -17.080 17.503 hybrid contribution 0.626 0.446 1.710 1.875 sum 2.543 -2.865 -15.370 15.840 Atomic orbital electron populations 1.21709 0.97938 0.99256 0.99273 1.19117 0.92552 0.92431 0.85621 0.98052 1.21307 1.31126 1.12391 0.90436 0.92223 1.24904 0.95110 0.95006 0.98969 1.69907 1.36878 1.22969 1.23241 0.86496 0.78600 0.79681 0.82970 1.19745 1.21132 1.21032 1.60797 1.32407 1.32751 1.05598 1.20185 0.99270 0.92711 0.87679 1.20105 0.90594 1.10381 1.00100 1.22332 0.97553 0.97129 0.90365 1.48171 1.04662 1.45174 1.17502 1.21863 1.01680 0.98654 0.81341 1.77265 0.99765 1.23727 1.10822 1.22616 0.90307 1.00600 0.92802 1.98398 1.42804 1.94168 1.61188 0.90165 0.97742 0.95034 0.93068 0.85044 0.90953 0.95104 0.80130 0.90629 0.89225 0.89367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.07 9.19 37.15 0.34 -2.72 16 2 C 0.21 5.39 2.60 -68.87 -0.18 5.21 16 3 H 0.00 0.05 7.80 -51.93 -0.40 -0.35 16 4 C -0.51 -14.32 8.59 -34.44 -0.30 -14.62 16 5 H 0.06 1.66 7.62 -52.48 -0.40 1.26 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.60 11.32 55.43 0.63 -24.97 16 8 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 N -0.68 -15.07 6.29 -109.23 -0.69 -15.76 16 13 C 0.13 2.45 5.83 -4.97 -0.03 2.42 16 14 C -0.20 -3.29 5.62 -105.02 -0.59 -3.88 16 15 C 0.07 0.96 11.39 -17.23 -0.20 0.76 16 16 N -0.37 -4.76 4.01 -68.17 -0.27 -5.03 16 17 C 0.11 0.77 11.47 59.85 0.69 1.46 16 18 N -0.29 -4.65 12.58 32.94 0.41 -4.24 16 19 C 0.13 2.16 7.84 -17.30 -0.14 2.03 16 20 Cl 0.01 0.11 29.13 -51.86 -1.51 -1.40 16 21 H 0.08 2.17 6.07 -51.93 -0.32 1.85 16 22 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 23 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.33 7.44 8.19 -39.29 -0.32 7.12 16 26 H 0.07 1.28 7.42 -51.93 -0.39 0.89 16 27 H 0.03 0.59 8.05 -51.93 -0.42 0.18 16 28 H 0.18 1.78 8.06 -52.48 -0.42 1.36 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 283.56 15.07 4.27 4.27 Total: -1.00 -31.40 283.56 -6.55 -37.95 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -3.88 Total: 0.36 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -0.49 Total: -7.72 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: 0.08 Total: -50.00 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 17 Polarization: 0.11 SS G_CDS: -1.51 Total: -1.40 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.40 -6.55 -37.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663170597.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.519 kcal (2) G-P(sol) polarization free energy of solvation -31.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds