Wall clock time and date at job start Thu Apr 9 2020 12:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 C 1.50692 * 109.47298 * 120.00156 * 2 1 3 5 5 H 1.08004 * 120.00412 * 119.99885 * 4 2 1 6 6 C 1.37879 * 120.00142 * 300.00195 * 4 2 1 7 7 N 1.31514 * 119.99996 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00298 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46769 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47176 * 119.99714 * 8 6 4 11 11 H 1.48495 * 109.47112 * 240.00028 * 8 6 4 12 12 N 1.46901 * 109.47269 * 240.00137 * 2 1 3 13 13 C 1.46905 * 110.99870 * 84.99904 * 12 2 1 14 14 C 1.50697 * 109.47066 * 180.02562 * 13 12 2 15 15 C 1.35305 * 126.04471 * 104.71540 * 14 13 12 16 16 N 1.34948 * 107.76740 * 179.89666 * 15 14 13 17 17 C 1.46498 * 126.02693 * 180.10282 * 16 15 14 18 18 N 1.40086 * 107.94636 * 0.36722 * 16 15 14 19 19 C 1.30891 * 108.20257 * 359.77169 * 18 16 15 20 20 Cl 1.73596 * 125.91501 * 180.02562 * 19 18 16 21 21 H 1.09006 * 109.47343 * 299.99942 * 1 2 3 22 22 H 1.09004 * 109.47587 * 59.99932 * 1 2 3 23 23 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 24 24 H 0.97004 * 120.00312 * 179.97438 * 7 6 4 25 25 H 1.00901 * 111.00067 * 208.95080 * 12 2 1 26 26 H 1.09001 * 109.46798 * 300.00327 * 13 12 2 27 27 H 1.08998 * 109.46961 * 60.00043 * 13 12 2 28 28 H 1.08004 * 126.11722 * 0.02895 * 15 14 13 29 29 H 1.08996 * 109.47264 * 270.28332 * 17 16 15 30 30 H 1.09000 * 109.47055 * 30.28766 * 17 16 15 31 31 H 1.09004 * 109.47240 * 150.28259 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.1465 -2.2870 3.6037 10 1 3.1466 -0.1875 4.8165 11 1 1.1661 -1.5868 4.8160 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5873 -0.5216 -3.5560 15 6 1.8397 -0.9380 -4.6042 16 7 2.6618 -1.5599 -5.4750 17 6 2.2684 -2.1631 -6.7508 18 7 3.9567 -1.5326 -4.9412 19 6 3.9115 -0.9100 -3.7907 20 17 5.2604 -0.6161 -2.7383 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7088 1.1613 3.4845 25 1 2.9173 -1.1204 -1.0288 26 1 1.0870 0.6164 -2.5525 27 1 2.7588 1.0463 -2.1182 28 1 0.7758 -0.7958 -4.7236 29 1 1.9936 -3.2055 -6.5905 30 1 1.4161 -1.6215 -7.1612 31 1 3.1029 -2.1107 -7.4501 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663170597.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:17:13 Heat of formation + Delta-G solvation = 50.876748 kcal Electronic energy + Delta-G solvation = -15148.933993 eV Core-core repulsion = 12492.224502 eV Total energy + Delta-G solvation = -2656.709491 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 243.083 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.27594 -37.86379 -37.60767 -34.89931 -33.81004 -32.10055 -29.92927 -27.73668 -27.21210 -25.11523 -22.22800 -21.74687 -21.32976 -18.63488 -17.71740 -16.86819 -16.59842 -16.00778 -15.91753 -15.27796 -14.92702 -14.46372 -14.14841 -14.04163 -13.49317 -13.23715 -13.02464 -12.77168 -12.69099 -12.54282 -12.49198 -12.17112 -12.11211 -11.95713 -11.41516 -10.83555 -10.54539 -10.28405 -9.51208 -8.93615 -8.09785 -6.22877 0.52682 0.72357 1.42219 1.43798 1.48080 1.56172 1.97842 2.44485 3.18703 3.58109 3.88990 4.00976 4.35846 4.42195 4.48668 4.61124 4.73805 4.81738 4.90759 5.06041 5.16091 5.22530 5.29104 5.54989 5.71669 5.93547 6.01365 6.28865 6.40561 6.53364 6.82998 7.03300 7.47135 8.95810 Molecular weight = 243.08amu Principal moments of inertia in cm(-1) A = 0.032404 B = 0.005809 C = 0.005244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.888176 B = 4818.691388 C = 5338.026120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.214 3.786 3 H -0.029 1.029 4 C -0.535 4.535 5 H 0.053 0.947 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.958 3.042 9 H -0.270 1.270 10 H -0.280 1.280 11 H -0.278 1.278 12 N -0.680 5.680 13 C 0.140 3.860 14 C -0.234 4.234 15 C 0.095 3.905 16 N -0.360 5.360 17 C 0.093 3.907 18 N -0.314 5.314 19 C 0.111 3.889 20 Cl -0.004 7.004 21 H 0.055 0.945 22 H 0.029 0.971 23 H 0.027 0.973 24 H 0.262 0.738 25 H 0.327 0.673 26 H 0.083 0.917 27 H 0.016 0.984 28 H 0.222 0.778 29 H 0.089 0.911 30 H 0.126 0.874 31 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.935 -3.456 -17.550 17.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 H -0.012 1.012 4 C -0.573 4.573 5 H 0.071 0.929 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.784 3.216 9 H -0.194 1.194 10 H -0.206 1.206 11 H -0.204 1.204 12 N -0.311 5.311 13 C 0.010 3.990 14 C -0.246 4.246 15 C -0.053 4.053 16 N -0.143 5.143 17 C -0.046 4.046 18 N -0.141 5.141 19 C -0.079 4.079 20 Cl 0.024 6.976 21 H 0.074 0.926 22 H 0.048 0.952 23 H 0.046 0.954 24 H 0.071 0.929 25 H 0.144 0.856 26 H 0.101 0.899 27 H 0.035 0.965 28 H 0.238 0.762 29 H 0.108 0.892 30 H 0.144 0.856 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.049 -4.224 -18.491 18.996 hybrid contribution 0.859 0.707 1.983 2.274 sum 1.908 -3.516 -16.507 16.985 Atomic orbital electron populations 1.21517 0.97249 0.98898 0.99285 1.18942 0.93042 0.90770 0.86674 1.01171 1.21598 1.31434 1.12487 0.91823 0.92879 1.25663 0.95225 0.95682 1.01779 1.70021 1.37526 1.23968 1.24013 0.85506 0.78173 0.78603 0.79342 1.19437 1.20631 1.20373 1.60762 1.32070 1.33061 1.05194 1.20079 0.99613 0.91995 0.87316 1.19967 0.91058 1.12831 1.00746 1.22856 0.98895 0.94654 0.88870 1.48658 1.03451 1.43778 1.18463 1.22379 1.03309 0.99758 0.79151 1.77203 1.01975 1.24201 1.10726 1.22717 0.90342 1.01533 0.93291 1.98382 1.43349 1.94284 1.61626 0.92590 0.95242 0.95364 0.92861 0.85592 0.89907 0.96543 0.76185 0.89229 0.85573 0.88663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.50 9.19 71.98 0.66 -4.83 16 2 C 0.21 11.11 2.60 44.16 0.11 11.22 16 3 H -0.03 -1.67 7.80 -2.39 -0.02 -1.69 16 4 C -0.53 -30.16 8.59 25.60 0.22 -29.94 16 5 H 0.05 2.99 7.62 -2.91 -0.02 2.97 16 6 C 0.02 0.88 5.30 84.66 0.45 1.33 16 7 N -0.92 -53.08 11.32 21.45 0.24 -52.83 16 8 Si 0.96 44.30 29.54 68.60 2.03 46.32 16 9 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 N -0.68 -30.00 6.29 -499.48 -3.14 -33.14 16 13 C 0.14 5.13 5.83 85.55 0.50 5.63 16 14 C -0.23 -7.40 5.62 -20.12 -0.11 -7.52 16 15 C 0.09 2.23 11.39 83.54 0.95 3.18 16 16 N -0.36 -8.17 4.01 -369.58 -1.48 -9.65 16 17 C 0.09 0.99 11.47 127.77 1.47 2.46 16 18 N -0.31 -9.68 12.58 -49.68 -0.62 -10.30 16 19 C 0.11 3.71 7.84 85.25 0.67 4.38 16 20 Cl 0.00 -0.14 29.13 -2.72 -0.08 -0.21 16 21 H 0.06 3.04 6.07 -2.38 -0.01 3.03 16 22 H 0.03 1.25 7.45 -2.39 -0.02 1.24 16 23 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 25 H 0.33 14.89 8.19 -89.69 -0.73 14.15 16 26 H 0.08 2.81 7.42 -2.39 -0.02 2.79 16 27 H 0.02 0.65 8.05 -2.39 -0.02 0.63 16 28 H 0.22 3.25 8.06 -2.91 -0.02 3.22 16 29 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 Total: -1.00 -68.07 283.56 2.26 -65.81 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 0.40 Total: 8.09 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 4.92 Total: -14.09 kcal Atomic # 7 Polarization: -100.92 SS G_CDS: -5.01 Total: -105.92 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -0.08 Total: -0.21 kcal Total: -68.07 2.26 -65.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663170597.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.688 kcal (2) G-P(sol) polarization free energy of solvation -68.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds