Wall clock time and date at job start Thu Apr 9 2020 12:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86801 * 120.00148 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46780 * 300.00120 * 3 2 1 6 6 H 1.48501 * 109.47039 * 60.00231 * 3 2 1 7 7 C 1.40047 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00380 * 180.02562 * 7 2 1 9 9 C 1.46382 * 119.99800 * 359.72267 * 7 2 1 10 10 O 1.21683 * 120.00055 * 0.27707 * 9 7 2 11 11 N 1.34774 * 119.99501 * 180.27774 * 9 7 2 12 12 C 1.46507 * 119.99686 * 180.02562 * 11 9 7 13 13 C 1.52996 * 109.47159 * 179.97438 * 12 11 9 14 14 O 1.42894 * 109.47476 * 64.99945 * 13 12 11 15 15 C 1.42895 * 114.00494 * 179.97438 * 14 13 12 16 16 H 1.09008 * 109.47615 * 55.00269 * 15 14 13 17 17 C 1.53096 * 109.48258 * 175.02134 * 15 14 13 18 18 C 1.53178 * 109.16019 * 177.59706 * 17 15 14 19 19 C 1.53175 * 109.03454 * 303.01877 * 18 17 15 20 20 C 1.53093 * 109.16287 * 56.98573 * 19 18 17 21 21 O 1.42899 * 109.42618 * 302.39262 * 20 19 18 22 22 H 0.97004 * 119.99542 * 359.97438 * 1 2 3 23 23 H 0.97000 * 120.00718 * 359.97438 * 11 9 7 24 24 H 1.09000 * 109.47027 * 300.00241 * 12 11 9 25 25 H 1.08998 * 109.46926 * 59.99636 * 12 11 9 26 26 H 1.09000 * 109.47016 * 185.00458 * 13 12 11 27 27 H 1.08997 * 109.47278 * 304.99766 * 13 12 11 28 28 H 1.08999 * 109.52122 * 297.50115 * 17 15 14 29 29 H 1.08996 * 109.51946 * 57.62818 * 17 15 14 30 30 H 1.08996 * 109.54794 * 62.89003 * 18 17 15 31 31 H 1.09003 * 109.53859 * 183.15654 * 18 17 15 32 32 H 1.09004 * 109.51963 * 176.89039 * 19 18 17 33 33 H 1.08999 * 109.53036 * 297.01449 * 19 18 17 34 34 H 1.08999 * 109.47871 * 62.37359 * 20 19 18 35 35 H 1.09003 * 109.47966 * 182.39481 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8821 2.3964 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2129 -0.0001 9 6 1.2750 -2.4805 0.0050 10 8 0.0582 -2.4805 0.0050 11 7 1.9490 -3.6476 0.0102 12 6 1.2164 -4.9164 0.0152 13 6 2.2107 -6.0793 0.0198 14 8 2.9530 -6.0666 1.2407 15 6 3.9145 -7.1183 1.3474 16 1 4.5806 -7.0906 0.4850 17 6 4.7312 -6.9353 2.6293 18 6 5.7182 -8.0986 2.7670 19 6 4.9400 -9.4179 2.7568 20 6 4.1153 -9.5049 1.4699 21 8 3.2407 -8.3777 1.3888 22 1 -0.4850 0.8401 0.0004 23 1 2.9190 -3.6477 0.0098 24 1 0.5894 -4.9704 0.9051 25 1 0.5901 -4.9778 -0.8748 26 1 1.6686 -7.0211 -0.0662 27 1 2.8948 -5.9758 -0.8224 28 1 5.2807 -5.9952 2.5800 29 1 4.0613 -6.9210 3.4890 30 1 6.4195 -8.0825 1.9328 31 1 6.2640 -8.0044 3.7058 32 1 5.6389 -10.2533 2.7988 33 1 4.2752 -9.4554 3.6198 34 1 4.7840 -9.5087 0.6092 35 1 3.5265 -10.4222 1.4769 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597678122.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:17:45 Heat of formation + Delta-G solvation = -147.501715 kcal Electronic energy + Delta-G solvation = -17514.288420 eV Core-core repulsion = 14511.807773 eV Total energy + Delta-G solvation = -3002.480648 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 243.130 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -39.74461 -37.57311 -36.57209 -33.88535 -33.28915 -32.21468 -30.57240 -28.53025 -25.95721 -24.82310 -23.37702 -22.03392 -20.48458 -19.59352 -17.45842 -17.17695 -16.73412 -15.90405 -15.29582 -14.96858 -14.67408 -14.55265 -14.07946 -13.58693 -13.41119 -13.14250 -12.89890 -12.64873 -12.20058 -11.60183 -11.42686 -11.34185 -11.24197 -11.11353 -10.89575 -10.77568 -10.67343 -10.36483 -10.12991 -9.75198 -9.59769 -8.79517 -7.53083 -7.38813 -6.11530 -4.56140 3.17442 3.25138 3.29839 3.30280 3.90630 4.16642 4.53343 4.57719 4.66716 4.68529 4.84598 4.86721 4.98209 5.14091 5.30143 5.42624 5.51347 5.53221 5.57283 5.67908 5.71510 5.82797 5.87269 5.90973 6.06329 6.42303 6.59982 7.02116 7.31332 7.50426 8.03233 8.19441 8.41719 9.09760 9.64176 10.67987 10.87214 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.042116 B = 0.004271 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.665204 B = 6554.567098 C = 7057.485805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.554 3.446 10 O -0.583 6.583 11 N -0.763 5.763 12 C 0.135 3.865 13 C 0.055 3.945 14 O -0.355 6.355 15 C 0.254 3.746 16 H 0.051 0.949 17 C -0.142 4.142 18 C -0.120 4.120 19 C -0.160 4.160 20 C 0.072 3.928 21 O -0.406 6.406 22 H 0.267 0.733 23 H 0.382 0.618 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.050 0.950 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.388 -16.852 2.940 21.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.358 3.642 10 O -0.466 6.466 11 N -0.419 5.419 12 C 0.010 3.990 13 C -0.022 4.022 14 O -0.274 6.274 15 C 0.158 3.842 16 H 0.068 0.932 17 C -0.180 4.180 18 C -0.157 4.157 19 C -0.198 4.198 20 C -0.005 4.005 21 O -0.328 6.328 22 H 0.077 0.923 23 H 0.213 0.787 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 11.064 -16.621 3.074 20.202 hybrid contribution 1.232 0.569 -0.161 1.366 sum 12.296 -16.052 2.913 20.429 Atomic orbital electron populations 1.70044 1.07046 1.27010 1.35736 1.25713 0.94602 1.00257 0.92668 0.86327 0.80478 0.81839 0.78138 1.18821 1.20227 1.20201 1.20924 0.93585 0.89432 1.54234 0.91440 1.18226 0.87194 0.82524 0.76260 1.90590 1.14132 1.86950 1.54959 1.46055 1.08605 1.04679 1.82594 1.20920 0.93321 0.83364 1.01432 1.22857 0.94359 0.99345 0.85591 1.88151 1.53703 1.45289 1.40298 1.22937 0.86795 0.77874 0.96546 0.93208 1.22013 0.98162 0.99532 0.98248 1.21587 0.97565 0.93862 1.02712 1.22248 0.99756 0.98201 0.99570 1.22470 0.93016 0.88681 0.96304 1.87830 1.35402 1.14956 1.94570 0.92257 0.78702 0.92471 0.91779 0.91785 0.93155 0.89816 0.90034 0.91652 0.90786 0.90712 0.90737 0.93230 0.88719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.73 11.83 55.55 0.66 -23.07 16 2 C 0.09 2.50 5.50 -17.37 -0.10 2.40 16 3 Si 0.91 20.62 29.56 -169.99 -5.02 15.59 16 4 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -15.94 9.54 -35.63 -0.34 -16.28 16 8 H 0.07 1.81 7.85 -52.49 -0.41 1.40 16 9 C 0.55 16.51 7.75 -12.99 -0.10 16.40 16 10 O -0.58 -19.64 15.02 5.20 0.08 -19.57 16 11 N -0.76 -18.19 5.50 -61.72 -0.34 -18.53 16 12 C 0.13 2.77 6.06 -4.04 -0.02 2.75 16 13 C 0.05 0.88 5.94 37.16 0.22 1.10 16 14 O -0.36 -5.97 10.21 -59.04 -0.60 -6.57 16 15 C 0.25 3.35 3.20 37.21 0.12 3.47 16 16 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 17 C -0.14 -1.58 5.79 -26.59 -0.15 -1.73 16 18 C -0.12 -0.98 6.03 -26.55 -0.16 -1.14 16 19 C -0.16 -1.23 6.14 -26.59 -0.16 -1.39 16 20 C 0.07 0.64 6.84 37.21 0.25 0.90 16 21 O -0.41 -5.34 10.03 -59.04 -0.59 -5.93 16 22 H 0.27 7.42 8.29 -40.82 -0.34 7.08 16 23 H 0.38 8.15 8.45 -40.82 -0.35 7.80 16 24 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 26 H 0.06 0.95 7.74 -51.93 -0.40 0.55 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 296.28 15.07 4.46 4.46 Total: -1.00 -36.10 296.28 -7.17 -43.27 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -5.37 Total: 3.85 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -0.44 Total: 6.48 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: 0.32 Total: -41.60 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: -1.12 Total: -32.07 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -36.10 -7.17 -43.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597678122.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.233 kcal (2) G-P(sol) polarization free energy of solvation -36.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds