Wall clock time and date at job start Thu Apr 9 2020 12:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81400 * 102.99956 * 2 1 4 4 H 1.09005 * 112.91088 * 316.25342 * 3 2 1 5 5 C 1.53780 * 113.61307 * 87.50763 * 3 2 1 6 6 C 1.53778 * 87.08400 * 139.97917 * 5 3 2 7 7 H 1.08999 * 113.69535 * 220.00741 * 6 5 3 8 8 N 1.46499 * 113.61343 * 89.11383 * 6 5 3 9 9 C 1.34777 * 120.00065 * 107.50841 * 8 6 5 10 10 O 1.21283 * 120.00122 * 359.97438 * 9 8 6 11 11 C 1.50701 * 120.00078 * 180.02562 * 9 8 6 12 12 C 1.53004 * 109.47211 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.47211 * 179.97438 * 12 11 9 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 12 11 15 15 C 1.37871 * 119.99694 * 180.27574 * 13 12 11 16 16 N 1.31523 * 119.99908 * 179.72112 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 359.71709 * 15 13 12 18 18 H 1.48500 * 109.47210 * 90.00069 * 17 15 13 19 19 H 1.48504 * 109.47424 * 210.00300 * 17 15 13 20 20 H 1.48502 * 109.46888 * 330.00390 * 17 15 13 21 21 C 1.53779 * 87.08268 * 334.56763 * 6 5 3 22 22 H 1.09003 * 109.46639 * 299.99709 * 1 2 3 23 23 H 1.08999 * 109.47453 * 59.99459 * 1 2 3 24 24 H 1.08998 * 109.47371 * 179.97438 * 1 2 3 25 25 H 1.09001 * 113.61902 * 25.42893 * 5 3 2 26 26 H 1.08998 * 113.61309 * 254.52743 * 5 3 2 27 27 H 0.97000 * 120.00380 * 287.50037 * 8 6 5 28 28 H 1.09000 * 109.47827 * 59.99362 * 11 9 8 29 29 H 1.09007 * 109.47098 * 299.99085 * 11 9 8 30 30 H 1.09000 * 109.47211 * 59.99027 * 12 11 9 31 31 H 1.09007 * 109.46376 * 299.99569 * 12 11 9 32 32 H 0.96995 * 120.00181 * 179.97438 * 16 15 13 33 33 H 1.08997 * 113.62182 * 139.97824 * 21 6 5 34 34 H 1.09004 * 113.61432 * 270.88621 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.6107 2.3442 -0.6943 5 6 2.3009 2.3815 1.4077 6 6 3.5206 3.1737 0.9084 7 1 4.3245 3.2479 1.6407 8 7 3.1762 4.4654 0.3091 9 6 3.4496 5.6086 0.9685 10 8 3.9803 5.5680 2.0583 11 6 3.0947 6.9373 0.3522 12 6 3.5080 8.0655 1.2995 13 6 3.1537 9.3942 0.6830 14 1 2.6814 9.4303 -0.2876 15 6 3.4382 10.5638 1.3553 16 7 3.1340 11.7236 0.8148 17 14 4.2555 10.5013 3.0338 18 1 5.7309 10.5299 2.8673 19 1 3.8253 11.6733 3.8379 20 1 3.8603 9.2508 3.7305 21 6 3.7284 2.0520 -0.1229 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 2.5395 1.6578 2.1871 26 1 1.4457 3.0089 1.6589 27 1 2.7515 4.4979 -0.5624 28 1 2.0192 6.9828 0.1809 29 1 3.6189 7.0491 -0.5970 30 1 4.5834 8.0201 1.4712 31 1 2.9835 7.9534 2.2485 32 1 3.3337 12.5464 1.2879 33 1 4.0256 2.4134 -1.1073 34 1 4.3573 1.2381 0.2380 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871097607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:16:56 Heat of formation + Delta-G solvation = -30.266059 kcal Electronic energy + Delta-G solvation = -15029.037443 eV Core-core repulsion = 12474.393386 eV Total energy + Delta-G solvation = -2554.644057 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 243.103 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.06493 -38.06660 -33.49865 -33.01527 -31.20799 -29.27767 -26.64355 -26.01240 -24.91986 -21.65809 -19.84029 -19.62881 -17.46641 -16.83825 -16.05665 -15.89256 -15.09984 -14.84877 -14.63081 -14.09334 -13.89835 -13.44458 -13.34478 -13.09862 -12.82391 -12.57586 -12.34874 -11.72948 -11.43252 -11.02399 -10.95121 -10.76306 -10.21325 -10.13642 -10.06318 -9.79934 -9.29203 -9.19130 -8.97116 -8.51964 -7.96503 -6.04320 -4.03309 1.42170 2.25790 3.03481 3.31562 3.37215 3.43887 3.54570 4.11342 4.17906 4.49854 4.58856 4.66257 4.81576 4.83517 5.26495 5.31155 5.33868 5.37843 5.42207 5.59856 5.62793 5.72443 5.90879 6.05056 6.06249 6.62501 6.66406 7.34354 7.41394 7.70116 7.77702 8.47997 8.60550 8.98461 9.58657 11.08496 Molecular weight = 243.10amu Principal moments of inertia in cm(-1) A = 0.055293 B = 0.003871 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.274940 B = 7231.892195 C = 7389.613585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.261 6.261 3 C -0.081 4.081 4 H 0.104 0.896 5 C -0.140 4.140 6 C 0.126 3.874 7 H 0.108 0.892 8 N -0.726 5.726 9 C 0.513 3.487 10 O -0.537 6.537 11 C -0.122 4.122 12 C 0.001 3.999 13 C -0.526 4.526 14 H 0.072 0.928 15 C 0.069 3.931 16 N -0.904 5.904 17 Si 0.878 3.122 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.261 1.261 21 C -0.117 4.117 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.098 0.902 25 H 0.100 0.900 26 H 0.076 0.924 27 H 0.399 0.601 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.019 0.981 31 H 0.023 0.977 32 H 0.263 0.737 33 H 0.084 0.916 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.629 -22.903 -3.215 23.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.033 6.033 3 C -0.209 4.209 4 H 0.123 0.877 5 C -0.182 4.182 6 C 0.018 3.982 7 H 0.126 0.874 8 N -0.379 5.379 9 C 0.302 3.698 10 O -0.412 6.412 11 C -0.162 4.162 12 C -0.037 4.037 13 C -0.564 4.564 14 H 0.090 0.910 15 C -0.133 4.133 16 N -0.542 5.542 17 Si 0.705 3.295 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.185 1.185 21 C -0.157 4.157 22 H 0.096 0.904 23 H 0.095 0.905 24 H 0.117 0.883 25 H 0.119 0.881 26 H 0.095 0.905 27 H 0.233 0.767 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.038 0.962 31 H 0.042 0.958 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.580 -23.623 -2.399 23.884 hybrid contribution -0.793 1.056 0.278 1.350 sum -3.373 -22.566 -2.121 22.915 Atomic orbital electron populations 1.23345 0.94275 1.06282 1.05040 1.86788 1.07471 1.11295 1.97703 1.24824 1.00989 0.93492 1.01643 0.87738 1.23771 0.99907 0.99315 0.95161 1.21678 0.97862 0.82611 0.96070 0.87400 1.45903 1.64356 1.04885 1.22741 1.21587 0.76838 0.86055 0.85344 1.90657 1.41992 1.87636 1.20953 1.21681 1.02651 0.90488 1.01388 1.19373 0.96995 0.92447 0.94836 1.21109 1.40525 0.88872 1.05845 0.90953 1.24977 0.95112 0.95329 0.97843 1.69914 1.48141 0.97474 1.38717 0.86789 0.80091 0.77949 0.84685 1.20216 1.21429 1.18535 1.23180 0.93227 0.98415 1.00850 0.90386 0.90545 0.88316 0.88124 0.90538 0.76729 0.89589 0.89531 0.96236 0.95817 0.92700 0.89787 0.88057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 10.76 101.05 1.09 0.26 16 2 S -0.26 -2.38 22.17 -107.50 -2.38 -4.76 16 3 C -0.08 -0.69 4.15 -25.92 -0.11 -0.80 16 4 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 5 C -0.14 -1.38 7.47 -25.92 -0.19 -1.58 16 6 C 0.13 1.41 4.32 -67.12 -0.29 1.12 16 7 H 0.11 1.41 7.46 -51.93 -0.39 1.02 16 8 N -0.73 -9.08 5.26 -53.02 -0.28 -9.36 16 9 C 0.51 9.01 7.83 -10.98 -0.09 8.93 16 10 O -0.54 -11.64 15.58 5.55 0.09 -11.55 16 11 C -0.12 -2.31 5.64 -27.88 -0.16 -2.46 16 12 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 13 C -0.53 -14.97 9.66 -34.44 -0.33 -15.30 16 14 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 15 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 16 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 17 Si 0.88 22.54 27.46 -169.99 -4.67 17.87 16 18 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 20 H -0.26 -6.67 6.55 56.52 0.37 -6.30 16 21 C -0.12 -1.01 7.42 -25.92 -0.19 -1.20 16 22 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 23 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 24 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.10 0.96 8.10 -51.93 -0.42 0.54 16 26 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.40 3.85 8.70 -40.82 -0.36 3.50 16 28 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 29 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 30 H 0.02 0.50 7.52 -51.93 -0.39 0.11 16 31 H 0.02 0.61 7.17 -51.93 -0.37 0.24 16 32 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 0.84 8.10 -51.93 -0.42 0.42 16 LS Contribution 299.74 15.07 4.52 4.52 Total: -1.00 -33.33 299.74 -7.73 -41.06 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -5.31 Total: -1.41 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -0.46 Total: -9.16 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.49 Total: -36.55 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.67 Total: 17.87 kcal Atomic # 16 Polarization: -2.38 SS G_CDS: -2.38 Total: -4.76 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.33 -7.73 -41.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871097607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.795 kcal (2) G-P(sol) polarization free energy of solvation -33.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds