Wall clock time and date at job start Thu Apr 9 2020 12:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81400 * 102.99956 * 2 1 4 4 H 1.09005 * 112.91088 * 316.25342 * 3 2 1 5 5 C 1.53780 * 113.61307 * 87.50763 * 3 2 1 6 6 C 1.53778 * 87.08400 * 139.97917 * 5 3 2 7 7 H 1.08999 * 113.69535 * 220.00741 * 6 5 3 8 8 N 1.46499 * 113.61343 * 89.11383 * 6 5 3 9 9 C 1.34777 * 120.00065 * 107.50841 * 8 6 5 10 10 O 1.21283 * 120.00122 * 359.97438 * 9 8 6 11 11 C 1.50701 * 120.00078 * 180.02562 * 9 8 6 12 12 C 1.53004 * 109.47211 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.47211 * 179.97438 * 12 11 9 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 12 11 15 15 C 1.37871 * 119.99694 * 180.27574 * 13 12 11 16 16 N 1.31523 * 119.99908 * 179.72112 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 359.71709 * 15 13 12 18 18 H 1.48500 * 109.47210 * 90.00069 * 17 15 13 19 19 H 1.48504 * 109.47424 * 210.00300 * 17 15 13 20 20 H 1.48502 * 109.46888 * 330.00390 * 17 15 13 21 21 C 1.53779 * 87.08268 * 334.56763 * 6 5 3 22 22 H 1.09003 * 109.46639 * 299.99709 * 1 2 3 23 23 H 1.08999 * 109.47453 * 59.99459 * 1 2 3 24 24 H 1.08998 * 109.47371 * 179.97438 * 1 2 3 25 25 H 1.09001 * 113.61902 * 25.42893 * 5 3 2 26 26 H 1.08998 * 113.61309 * 254.52743 * 5 3 2 27 27 H 0.97000 * 120.00380 * 287.50037 * 8 6 5 28 28 H 1.09000 * 109.47827 * 59.99362 * 11 9 8 29 29 H 1.09007 * 109.47098 * 299.99085 * 11 9 8 30 30 H 1.09000 * 109.47211 * 59.99027 * 12 11 9 31 31 H 1.09007 * 109.46376 * 299.99569 * 12 11 9 32 32 H 0.96995 * 120.00181 * 179.97438 * 16 15 13 33 33 H 1.08997 * 113.62182 * 139.97824 * 21 6 5 34 34 H 1.09004 * 113.61432 * 270.88621 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.6107 2.3442 -0.6943 5 6 2.3009 2.3815 1.4077 6 6 3.5206 3.1737 0.9084 7 1 4.3245 3.2479 1.6407 8 7 3.1762 4.4654 0.3091 9 6 3.4496 5.6086 0.9685 10 8 3.9803 5.5680 2.0583 11 6 3.0947 6.9373 0.3522 12 6 3.5080 8.0655 1.2995 13 6 3.1537 9.3942 0.6830 14 1 2.6814 9.4303 -0.2876 15 6 3.4382 10.5638 1.3553 16 7 3.1340 11.7236 0.8148 17 14 4.2555 10.5013 3.0338 18 1 5.7309 10.5299 2.8673 19 1 3.8253 11.6733 3.8379 20 1 3.8603 9.2508 3.7305 21 6 3.7284 2.0520 -0.1229 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 2.5395 1.6578 2.1871 26 1 1.4457 3.0089 1.6589 27 1 2.7515 4.4979 -0.5624 28 1 2.0192 6.9828 0.1809 29 1 3.6189 7.0491 -0.5970 30 1 4.5834 8.0201 1.4712 31 1 2.9835 7.9534 2.2485 32 1 3.3337 12.5464 1.2879 33 1 4.0256 2.4134 -1.1073 34 1 4.3573 1.2381 0.2380 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871097607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:16:56 Heat of formation + Delta-G solvation = -52.442717 kcal Electronic energy + Delta-G solvation = -15029.999095 eV Core-core repulsion = 12474.393386 eV Total energy + Delta-G solvation = -2555.605709 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 243.103 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.18603 -39.22655 -35.54171 -34.26074 -33.15846 -29.80531 -28.34720 -26.76251 -26.03529 -23.36545 -21.34373 -20.56481 -19.25189 -18.06177 -17.24177 -16.95932 -16.50081 -16.24397 -15.77455 -15.40426 -14.83874 -14.65731 -14.56751 -14.31204 -14.00827 -13.57084 -13.52499 -13.39741 -12.90071 -12.50775 -12.10726 -11.96554 -11.77699 -11.76545 -11.54072 -11.39821 -10.87871 -10.78117 -10.74579 -10.07821 -8.66345 -8.31613 -6.34529 0.78527 1.33518 1.35548 1.50405 1.62818 1.66634 2.18179 2.35057 3.04235 3.37287 3.40574 3.75608 3.95520 4.00315 4.33360 4.35449 4.39230 4.50139 4.53489 4.70572 4.77476 4.83600 4.89061 4.93280 4.97649 5.08884 5.34680 5.45102 5.58875 5.62074 6.23311 6.57594 6.72217 7.30590 7.31260 8.84056 Molecular weight = 243.10amu Principal moments of inertia in cm(-1) A = 0.055293 B = 0.003871 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.274940 B = 7231.892195 C = 7389.613585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.293 6.293 3 C -0.068 4.068 4 H 0.116 0.884 5 C -0.136 4.136 6 C 0.114 3.886 7 H 0.087 0.913 8 N -0.702 5.702 9 C 0.518 3.482 10 O -0.584 6.584 11 C -0.117 4.117 12 C 0.004 3.996 13 C -0.529 4.529 14 H 0.051 0.949 15 C 0.013 3.987 16 N -0.944 5.944 17 Si 0.938 3.062 18 H -0.269 1.269 19 H -0.278 1.278 20 H -0.261 1.261 21 C -0.103 4.103 22 H 0.079 0.921 23 H 0.085 0.915 24 H 0.109 0.891 25 H 0.102 0.898 26 H 0.069 0.931 27 H 0.416 0.584 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.009 0.991 31 H 0.010 0.990 32 H 0.267 0.733 33 H 0.097 0.903 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.924 -24.623 -3.587 25.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.065 6.065 3 C -0.197 4.197 4 H 0.135 0.865 5 C -0.177 4.177 6 C 0.006 3.994 7 H 0.105 0.895 8 N -0.354 5.354 9 C 0.307 3.693 10 O -0.464 6.464 11 C -0.156 4.156 12 C -0.034 4.034 13 C -0.567 4.567 14 H 0.069 0.931 15 C -0.185 4.185 16 N -0.585 5.585 17 Si 0.763 3.237 18 H -0.194 1.194 19 H -0.204 1.204 20 H -0.186 1.186 21 C -0.143 4.143 22 H 0.098 0.902 23 H 0.104 0.896 24 H 0.128 0.872 25 H 0.121 0.879 26 H 0.088 0.912 27 H 0.254 0.746 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.027 0.973 31 H 0.028 0.972 32 H 0.076 0.924 33 H 0.116 0.884 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.895 -25.384 -2.819 25.704 hybrid contribution -0.765 1.531 0.323 1.742 sum -3.660 -23.854 -2.496 24.262 Atomic orbital electron populations 1.23402 0.91990 1.07235 1.05615 1.86926 1.10089 1.11762 1.97725 1.24744 1.01075 0.93201 1.00689 0.86542 1.23727 0.98733 0.98996 0.96244 1.21807 0.98163 0.82381 0.96999 0.89472 1.45587 1.62789 1.04164 1.22899 1.21204 0.76561 0.86803 0.84747 1.90645 1.44489 1.88261 1.22966 1.21504 1.03920 0.89599 1.00625 1.19229 0.96072 0.92779 0.95308 1.21441 1.39494 0.90691 1.05061 0.93106 1.25811 0.95979 0.95139 1.01549 1.70025 1.49734 0.98240 1.40472 0.85827 0.79401 0.78048 0.80424 1.19377 1.20392 1.18570 1.23113 0.93523 0.97072 1.00550 0.90152 0.89608 0.87244 0.87936 0.91236 0.74644 0.87869 0.87769 0.97305 0.97209 0.92383 0.88423 0.87518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 10.76 113.37 1.22 -0.05 16 2 S -0.29 -4.72 22.17 -56.49 -1.25 -5.97 16 3 C -0.07 -1.00 4.15 31.12 0.13 -0.87 16 4 H 0.12 1.45 8.14 -2.38 -0.02 1.43 16 5 C -0.14 -2.44 7.47 31.12 0.23 -2.21 16 6 C 0.11 2.36 4.32 45.52 0.20 2.56 16 7 H 0.09 2.23 7.46 -2.39 -0.02 2.22 16 8 N -0.70 -16.07 5.26 -440.04 -2.32 -18.38 16 9 C 0.52 17.55 7.83 87.66 0.69 18.24 16 10 O -0.58 -25.18 15.58 -3.04 -0.05 -25.22 16 11 C -0.12 -4.25 5.64 29.85 0.17 -4.08 16 12 C 0.00 0.20 3.33 29.85 0.10 0.30 16 13 C -0.53 -30.30 9.66 25.60 0.25 -30.05 16 14 H 0.05 3.05 7.99 -2.91 -0.02 3.03 16 15 C 0.01 0.76 5.47 84.65 0.46 1.22 16 16 N -0.94 -58.99 13.96 21.45 0.30 -58.69 16 17 Si 0.94 46.66 27.46 68.60 1.88 48.54 16 18 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 19 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 20 H -0.26 -12.92 6.55 99.48 0.65 -12.26 16 21 C -0.10 -1.52 7.42 31.12 0.23 -1.29 16 22 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.10 1.82 8.10 -2.39 -0.02 1.81 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 27 H 0.42 6.73 8.70 -92.71 -0.81 5.92 16 28 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 29 H 0.10 3.41 8.14 -2.38 -0.02 3.39 16 30 H 0.01 0.44 7.52 -2.39 -0.02 0.42 16 31 H 0.01 0.49 7.17 -2.38 -0.02 0.48 16 32 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 33 H 0.10 1.21 8.14 -2.39 -0.02 1.20 16 34 H 0.11 1.52 8.10 -2.39 -0.02 1.50 16 Total: -1.00 -71.93 299.74 2.46 -69.47 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: 0.22 Total: 6.48 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: 3.67 Total: -16.23 kcal Atomic # 7 Polarization: -75.05 SS G_CDS: -2.02 Total: -77.07 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.05 Total: -25.22 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.88 Total: 48.54 kcal Atomic # 16 Polarization: -4.72 SS G_CDS: -1.25 Total: -5.97 kcal Total: -71.93 2.46 -69.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871097607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.027 kcal (2) G-P(sol) polarization free energy of solvation -71.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds