Wall clock time and date at job start Thu Apr 9 2020 12:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00601 * 2 1 4 4 H 1.48500 * 109.47228 * 270.00583 * 3 2 1 5 5 H 1.48506 * 109.46650 * 30.00022 * 3 2 1 6 6 H 1.48491 * 109.47593 * 149.99892 * 3 2 1 7 7 C 1.37882 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99691 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00087 * 180.02562 * 7 2 1 10 10 N 1.46896 * 109.47082 * 179.97438 * 9 7 2 11 11 C 1.46965 * 111.00038 * 169.99612 * 10 9 7 12 12 C 1.53047 * 109.36179 * 183.19121 * 11 10 9 13 13 N 1.46964 * 109.36575 * 301.59779 * 12 11 10 14 14 C 1.46901 * 110.99906 * 183.19479 * 13 12 11 15 15 C 1.52997 * 109.46891 * 170.00340 * 14 13 12 16 16 N 1.46507 * 109.47202 * 179.97438 * 15 14 13 17 17 O 1.21803 * 119.99839 * 44.99609 * 16 15 14 18 18 O 1.21799 * 119.99959 * 224.72523 * 16 15 14 19 19 C 1.46955 * 110.87964 * 59.32445 * 13 12 11 20 20 C 1.46953 * 111.00542 * 293.79852 * 10 9 7 21 21 H 0.97001 * 119.99309 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47549 * 59.99782 * 9 7 2 23 23 H 1.09006 * 109.46913 * 299.99245 * 9 7 2 24 24 H 1.08998 * 109.48750 * 63.22687 * 11 10 9 25 25 H 1.08997 * 109.50740 * 303.16745 * 11 10 9 26 26 H 1.09004 * 109.48685 * 181.63417 * 12 11 10 27 27 H 1.08998 * 109.49545 * 61.56926 * 12 11 10 28 28 H 1.08996 * 109.47318 * 49.99753 * 14 13 12 29 29 H 1.09003 * 109.47074 * 289.99582 * 14 13 12 30 30 H 1.08996 * 109.47619 * 59.99597 * 15 14 13 31 31 H 1.08998 * 109.47062 * 299.99261 * 15 14 13 32 32 H 1.09001 * 109.48897 * 60.64839 * 19 13 12 33 33 H 1.08997 * 109.48988 * 180.71375 * 19 13 12 34 34 H 1.08998 * 109.48581 * 296.78344 * 20 10 9 35 35 H 1.09004 * 109.48552 * 56.84161 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 7 4.0011 -2.5792 -0.0001 11 6 5.4506 -2.6254 -0.2379 12 6 5.9068 -4.0845 -0.3097 13 7 5.5599 -4.7659 0.9454 14 6 6.0495 -6.1509 0.9452 15 6 5.8946 -6.7467 2.3458 16 7 6.3823 -8.1282 2.3456 17 8 7.4360 -8.4019 1.7993 18 8 5.7366 -9.0021 2.8960 19 6 4.1104 -4.7197 1.1831 20 6 3.6542 -3.2606 1.2549 21 1 -0.4849 0.8401 -0.0004 22 1 3.8746 -0.6810 0.8905 23 1 3.8752 -0.6799 -0.8896 24 1 5.9692 -2.1220 0.5781 25 1 5.6812 -2.1255 -1.1786 26 1 6.9862 -4.1212 -0.4571 27 1 5.4087 -4.5807 -1.1426 28 1 7.1011 -6.1645 0.6588 29 1 5.4715 -6.7405 0.2336 30 1 4.8430 -6.7331 2.6322 31 1 6.4726 -6.1572 3.0575 32 1 3.5918 -5.2232 0.3672 33 1 3.8801 -5.2194 2.1240 34 1 4.1523 -2.7643 2.0878 35 1 2.5748 -3.2239 1.4022 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334736471.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:17:19 Heat of formation + Delta-G solvation = 7.758724 kcal Electronic energy + Delta-G solvation = -17723.175713 eV Core-core repulsion = 14759.720415 eV Total energy + Delta-G solvation = -2963.455299 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 243.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.40681 -39.20974 -36.69566 -35.91729 -32.99337 -32.01808 -30.73728 -28.77514 -26.36270 -24.29477 -23.59776 -22.20783 -21.19427 -19.55468 -19.05300 -18.62880 -17.78129 -16.88959 -15.96370 -15.47807 -14.69143 -14.60188 -14.56632 -13.99838 -13.78551 -13.38767 -12.70171 -12.38687 -12.20345 -11.92769 -11.74149 -11.61500 -11.31949 -11.27657 -11.13010 -11.00515 -10.75715 -10.54782 -10.24435 -9.93871 -9.37589 -8.67685 -8.63657 -7.53356 -6.13713 -4.12017 0.33614 1.44183 3.22125 3.30104 3.31216 3.56570 3.88555 4.07099 4.34254 4.49401 4.59331 4.85556 5.01577 5.13853 5.17376 5.25024 5.42856 5.50613 5.59977 5.71179 5.87346 6.06444 6.11812 6.27464 6.43615 6.65872 6.69668 6.80163 6.91371 7.36777 7.47800 7.75637 7.89738 8.54928 8.93087 9.47578 10.99223 Molecular weight = 243.14amu Principal moments of inertia in cm(-1) A = 0.052445 B = 0.004398 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.762171 B = 6365.118213 C = 6702.396633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.875 3.125 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.513 4.513 8 H 0.080 0.920 9 C 0.163 3.837 10 N -0.530 5.530 11 C 0.053 3.947 12 C 0.063 3.937 13 N -0.535 5.535 14 C 0.049 3.951 15 C -0.013 4.013 16 N -0.014 5.014 17 O -0.162 6.162 18 O -0.166 6.166 19 C 0.047 3.953 20 C 0.067 3.933 21 H 0.264 0.736 22 H -0.010 1.010 23 H 0.025 0.975 24 H 0.033 0.967 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.102 0.898 29 H 0.051 0.949 30 H 0.133 0.867 31 H 0.146 0.854 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.031 0.969 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.819 -10.062 3.193 16.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.703 3.297 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.551 4.551 8 H 0.098 0.902 9 C 0.037 3.963 10 N -0.255 5.255 11 C -0.076 4.076 12 C -0.064 4.064 13 N -0.261 5.261 14 C -0.081 4.081 15 C -0.130 4.130 16 N 0.507 4.493 17 O -0.382 6.382 18 O -0.385 6.385 19 C -0.080 4.080 20 C -0.061 4.061 21 H 0.074 0.926 22 H 0.008 0.992 23 H 0.043 0.957 24 H 0.052 0.948 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.065 0.935 28 H 0.120 0.880 29 H 0.069 0.931 30 H 0.151 0.849 31 H 0.164 0.836 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.050 0.950 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 12.373 -9.183 3.189 15.735 hybrid contribution 0.396 0.791 0.060 0.887 sum 12.769 -8.392 3.248 15.621 Atomic orbital electron populations 1.69890 1.06146 1.26961 1.50742 1.24899 0.94739 0.98900 0.94703 0.86858 0.80268 0.83965 0.78639 1.20095 1.21128 1.19299 1.21000 0.88633 0.94718 1.50782 0.90215 1.20161 0.97143 0.83779 0.95227 1.62118 1.10274 1.19420 1.33668 1.22132 0.90286 0.94270 1.00899 1.22192 1.00056 0.95105 0.89077 1.62148 1.15546 1.11953 1.36477 1.22154 1.03502 0.90892 0.91516 1.24636 1.05514 0.78735 1.04120 1.44681 1.00418 1.05847 0.98372 1.94553 1.10933 1.88956 1.43795 1.94581 1.56524 1.43524 1.43826 1.22448 0.85917 0.99165 1.00489 1.22018 1.02141 0.91008 0.90957 0.92566 0.99214 0.95683 0.94840 0.90477 0.90452 0.93505 0.87970 0.93112 0.84861 0.83600 0.93383 0.90989 0.95037 0.88577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.89 13.96 55.43 0.77 -26.12 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 20.92 27.47 -169.99 -4.67 16.25 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 7 C -0.51 -14.07 9.03 -34.44 -0.31 -14.38 16 8 H 0.08 2.37 7.37 -52.49 -0.39 1.99 16 9 C 0.16 3.79 3.79 -4.98 -0.02 3.77 16 10 N -0.53 -10.39 4.70 -235.92 -1.11 -11.50 16 11 C 0.05 0.83 5.61 -3.76 -0.02 0.81 16 12 C 0.06 0.80 5.61 -3.77 -0.02 0.77 16 13 N -0.54 -6.38 4.71 -234.47 -1.10 -7.48 16 14 C 0.05 0.46 4.86 -3.82 -0.02 0.45 16 15 C -0.01 -0.11 6.36 -4.04 -0.03 -0.13 16 16 N -0.01 -0.16 4.23 -10.61 -0.04 -0.21 16 17 O -0.16 -1.99 18.43 -29.46 -0.54 -2.53 16 18 O -0.17 -2.10 19.22 -29.46 -0.57 -2.67 16 19 C 0.05 0.64 5.41 -3.77 -0.02 0.62 16 20 C 0.07 1.18 5.43 -3.77 -0.02 1.16 16 21 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 22 H -0.01 -0.23 7.18 -51.93 -0.37 -0.61 16 23 H 0.03 0.58 7.45 -51.93 -0.39 0.20 16 24 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16 26 H 0.08 0.80 8.07 -51.93 -0.42 0.38 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.10 0.91 7.73 -51.93 -0.40 0.51 16 29 H 0.05 0.51 8.12 -51.93 -0.42 0.09 16 30 H 0.13 1.04 6.46 -51.93 -0.34 0.70 16 31 H 0.15 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.79 6.34 -51.93 -0.33 0.46 16 34 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.10 1.90 6.79 -51.93 -0.35 1.55 16 LS Contribution 287.63 15.07 4.33 4.33 Total: -1.00 -30.25 287.63 -8.59 -38.83 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: -5.11 Total: -3.85 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -0.55 Total: -5.07 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: -1.48 Total: -45.30 kcal Atomic # 8 Polarization: -4.09 SS G_CDS: -1.11 Total: -5.20 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.25 -8.59 -38.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334736471.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.594 kcal (2) G-P(sol) polarization free energy of solvation -30.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds