Wall clock time and date at job start Thu Apr 9 2020 12:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46526 * 2 1 4 4 C 1.52997 * 109.46997 * 119.99557 * 2 1 3 5 5 C 1.50701 * 109.47253 * 295.00166 * 4 2 1 6 6 H 1.08005 * 119.99950 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99960 * 180.02562 * 5 4 2 8 8 N 1.31518 * 120.00081 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00079 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47035 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47062 * 120.00296 * 9 7 5 12 12 H 1.48498 * 109.47626 * 240.00365 * 9 7 5 13 13 C 1.52996 * 109.47297 * 239.99756 * 2 1 3 14 14 N 1.46907 * 109.47089 * 64.99957 * 13 2 1 15 15 C 1.46902 * 110.99913 * 185.46813 * 14 13 2 16 16 C 1.52996 * 110.45733 * 302.39595 * 15 14 13 17 17 O 1.42904 * 109.46945 * 305.09594 * 16 15 14 18 18 C 1.54509 * 110.51061 * 64.99933 * 15 14 13 19 19 C 1.54478 * 104.06462 * 118.64003 * 18 15 14 20 20 O 1.44427 * 104.80136 * 23.98197 * 19 18 15 21 21 C 1.44645 * 105.36910 * 319.56092 * 20 19 18 22 22 H 1.09004 * 109.47235 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47721 * 300.00008 * 1 2 3 24 24 H 1.09005 * 109.47645 * 60.00788 * 1 2 3 25 25 H 1.08993 * 109.47184 * 55.00705 * 4 2 1 26 26 H 1.09005 * 109.46755 * 175.00498 * 4 2 1 27 27 H 0.97000 * 120.00152 * 179.97438 * 8 7 5 28 28 H 1.08999 * 109.47205 * 304.99932 * 13 2 1 29 29 H 1.08999 * 109.46856 * 184.99271 * 13 2 1 30 30 H 1.00900 * 111.00025 * 61.51607 * 14 13 2 31 31 H 1.08993 * 109.47312 * 65.10059 * 16 15 14 32 32 H 1.08999 * 109.47248 * 185.10479 * 16 15 14 33 33 H 0.96699 * 114.00096 * 180.02562 * 17 16 15 34 34 H 1.08997 * 110.51261 * 237.29197 * 18 15 14 35 35 H 1.09008 * 110.50954 * 359.97438 * 18 15 14 36 36 H 1.09000 * 110.37252 * 142.80596 * 19 18 15 37 37 H 1.08999 * 110.37565 * 265.14634 * 19 18 15 38 38 H 1.09005 * 110.34181 * 281.59762 * 21 20 19 39 39 H 1.08995 * 110.51137 * 159.18688 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6412 0.0572 2.4766 6 1 1.0798 0.9743 2.3756 7 6 1.9931 -0.4015 3.7283 8 7 2.6772 -1.5180 3.8512 9 14 1.4996 0.5637 5.2495 10 1 0.7420 1.7746 4.8433 11 1 0.6459 -0.2852 6.1189 12 1 2.7178 0.9687 5.9958 13 6 2.0400 -0.7213 -1.2492 14 7 1.6514 0.0374 -2.4457 15 6 2.0109 -0.6903 -3.6701 16 6 3.5126 -0.9817 -3.6976 17 8 4.2377 0.2395 -3.5394 18 6 1.2026 -2.0028 -3.7770 19 6 0.3883 -1.8373 -5.0792 20 8 1.1366 -0.8829 -5.8635 21 6 1.5926 0.1147 -4.9206 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8901 25 1 1.6055 -1.7197 1.2952 26 1 3.1263 -0.7993 1.2056 27 1 2.9251 -1.8405 4.7318 28 1 1.6054 -1.7198 -1.2951 29 1 3.1263 -0.7993 -1.2055 30 1 2.0623 0.9589 -2.4388 31 1 3.7655 -1.6624 -2.8849 32 1 3.7764 -1.4399 -4.6508 33 1 5.1985 0.1303 -3.5476 34 1 1.8729 -2.8590 -3.8518 35 1 0.5366 -2.1119 -2.9209 36 1 0.3176 -2.7889 -5.6060 37 1 -0.6063 -1.4500 -4.8582 38 1 0.7833 0.8026 -4.6758 39 1 2.4460 0.6597 -5.3240 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380240708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:17:59 Heat of formation + Delta-G solvation = -110.441014 kcal Electronic energy + Delta-G solvation = -18403.400106 eV Core-core repulsion = 15538.359626 eV Total energy + Delta-G solvation = -2865.040480 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.03964 -37.11302 -36.05435 -33.95944 -32.13293 -30.31770 -28.91572 -26.71173 -26.00766 -24.81629 -22.91192 -22.29873 -19.43411 -19.07521 -17.44225 -16.62985 -16.29163 -16.06753 -15.24803 -15.10565 -14.59209 -14.35086 -14.11580 -13.69567 -13.02642 -12.73140 -12.33396 -12.23183 -11.98209 -11.66575 -11.44959 -11.24922 -11.15478 -10.86600 -10.82527 -10.73092 -10.27519 -10.24109 -10.11681 -9.77274 -9.66933 -9.12283 -8.93618 -8.32613 -8.13401 -5.97368 -3.98128 3.32379 3.39998 3.44393 3.85287 3.94459 4.45593 4.49977 4.55516 4.77347 4.94155 5.14387 5.18793 5.35537 5.38754 5.51232 5.62864 5.68608 5.74543 5.76851 5.83438 5.94944 5.99120 6.19430 6.39881 6.56444 6.65573 6.71680 7.03157 7.19772 7.21653 7.36940 7.47619 7.67208 7.71338 7.86570 8.03176 8.47705 9.08536 9.65359 11.14295 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.040151 B = 0.004769 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.192015 B = 5869.463321 C = 6094.210628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.080 4.080 3 H 0.054 0.946 4 C 0.027 3.973 5 C -0.510 4.510 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.063 3.937 14 N -0.665 5.665 15 C 0.087 3.913 16 C 0.052 3.948 17 O -0.570 6.570 18 C -0.145 4.145 19 C 0.049 3.951 20 O -0.380 6.380 21 C 0.059 3.941 22 H 0.037 0.963 23 H 0.053 0.947 24 H 0.042 0.958 25 H 0.015 0.985 26 H 0.011 0.989 27 H 0.258 0.742 28 H 0.064 0.936 29 H 0.027 0.973 30 H 0.347 0.653 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.381 0.619 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.342 -0.258 -16.912 16.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.099 4.099 3 H 0.072 0.928 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.066 4.066 14 N -0.296 5.296 15 C -0.006 4.006 16 C -0.028 4.028 17 O -0.375 6.375 18 C -0.183 4.183 19 C -0.028 4.028 20 O -0.299 6.299 21 C -0.018 4.018 22 H 0.057 0.943 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.033 0.967 26 H 0.030 0.970 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.046 0.954 30 H 0.166 0.834 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.228 0.772 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.498 -0.360 -16.985 17.055 hybrid contribution 1.416 0.181 1.240 1.891 sum -0.082 -0.180 -15.745 15.747 Atomic orbital electron populations 1.21588 0.95826 1.00378 1.00184 1.21165 0.95855 0.99050 0.93847 0.92774 1.19120 0.95851 0.95504 0.90532 1.21283 1.34364 1.08260 0.90966 0.92504 1.25020 0.95356 0.95098 0.99106 1.69977 1.39238 1.21357 1.23234 0.86576 0.78239 0.80159 0.83281 1.19728 1.21102 1.21128 1.22179 0.97422 0.97509 0.89442 1.60784 1.62621 1.06049 1.00143 1.22290 0.90980 0.94747 0.92581 1.22897 0.93286 0.86701 0.99879 1.86393 1.22651 1.31825 1.96664 1.23003 0.99416 0.96273 0.99570 1.23375 0.95161 0.93222 0.91027 1.89121 1.71507 1.37753 1.31484 1.23463 0.99707 0.91099 0.87567 0.94340 0.92804 0.93918 0.96686 0.97020 0.93191 0.91727 0.95447 0.83424 0.92982 0.93333 0.77229 0.90827 0.88590 0.89321 0.91888 0.91042 0.88791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 8.89 37.16 0.33 -2.04 16 2 C -0.08 -1.64 2.52 -90.62 -0.23 -1.87 16 3 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.36 8.41 -34.44 -0.29 -14.65 16 6 H 0.06 1.57 7.06 -52.48 -0.37 1.20 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 9 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.06 1.08 4.26 -3.82 -0.02 1.06 16 14 N -0.66 -9.68 5.41 -98.37 -0.53 -10.21 16 15 C 0.09 1.09 0.72 -130.03 -0.09 1.00 16 16 C 0.05 0.62 5.12 37.16 0.19 0.81 16 17 O -0.57 -6.71 12.69 -35.23 -0.45 -7.15 16 18 C -0.14 -1.68 5.82 -25.16 -0.15 -1.82 16 19 C 0.05 0.53 7.64 37.93 0.29 0.82 16 20 O -0.38 -4.88 11.65 -35.23 -0.41 -5.29 16 21 C 0.06 0.72 6.83 37.94 0.26 0.98 16 22 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 24 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 25 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.06 1.10 6.56 -51.93 -0.34 0.76 16 29 H 0.03 0.49 6.78 -51.93 -0.35 0.14 16 30 H 0.35 5.19 8.35 -39.29 -0.33 4.86 16 31 H 0.05 0.65 6.88 -51.93 -0.36 0.29 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.38 2.95 9.12 45.56 0.42 3.36 16 34 H 0.07 0.78 7.73 -51.93 -0.40 0.37 16 35 H 0.10 1.21 6.87 -51.92 -0.36 0.85 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.88 8.06 -51.93 -0.42 0.46 16 39 H 0.09 1.12 7.57 -51.93 -0.39 0.72 16 LS Contribution 308.99 15.07 4.66 4.66 Total: -1.00 -30.98 308.99 -6.71 -37.68 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -5.76 Total: 3.57 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: 0.07 Total: -13.67 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.20 Total: -36.55 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -0.86 Total: -12.45 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.98 -6.71 -37.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380240708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.759 kcal (2) G-P(sol) polarization free energy of solvation -30.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds