Wall clock time and date at job start Thu Apr 9 2020 12:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46526 * 2 1 4 4 C 1.52997 * 109.46997 * 119.99557 * 2 1 3 5 5 C 1.50701 * 109.47253 * 295.00166 * 4 2 1 6 6 H 1.08005 * 119.99950 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99960 * 180.02562 * 5 4 2 8 8 N 1.31518 * 120.00081 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00079 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47035 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47062 * 120.00296 * 9 7 5 12 12 H 1.48498 * 109.47626 * 240.00365 * 9 7 5 13 13 C 1.52996 * 109.47297 * 239.99756 * 2 1 3 14 14 N 1.46907 * 109.47089 * 64.99957 * 13 2 1 15 15 C 1.46902 * 110.99913 * 185.46813 * 14 13 2 16 16 C 1.52996 * 110.45733 * 302.39595 * 15 14 13 17 17 O 1.42904 * 109.46945 * 305.09594 * 16 15 14 18 18 C 1.54509 * 110.51061 * 64.99933 * 15 14 13 19 19 C 1.54478 * 104.06462 * 118.64003 * 18 15 14 20 20 O 1.44427 * 104.80136 * 23.98197 * 19 18 15 21 21 C 1.44645 * 105.36910 * 319.56092 * 20 19 18 22 22 H 1.09004 * 109.47235 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47721 * 300.00008 * 1 2 3 24 24 H 1.09005 * 109.47645 * 60.00788 * 1 2 3 25 25 H 1.08993 * 109.47184 * 55.00705 * 4 2 1 26 26 H 1.09005 * 109.46755 * 175.00498 * 4 2 1 27 27 H 0.97000 * 120.00152 * 179.97438 * 8 7 5 28 28 H 1.08999 * 109.47205 * 304.99932 * 13 2 1 29 29 H 1.08999 * 109.46856 * 184.99271 * 13 2 1 30 30 H 1.00900 * 111.00025 * 61.51607 * 14 13 2 31 31 H 1.08993 * 109.47312 * 65.10059 * 16 15 14 32 32 H 1.08999 * 109.47248 * 185.10479 * 16 15 14 33 33 H 0.96699 * 114.00096 * 180.02562 * 17 16 15 34 34 H 1.08997 * 110.51261 * 237.29197 * 18 15 14 35 35 H 1.09008 * 110.50954 * 359.97438 * 18 15 14 36 36 H 1.09000 * 110.37252 * 142.80596 * 19 18 15 37 37 H 1.08999 * 110.37565 * 265.14634 * 19 18 15 38 38 H 1.09005 * 110.34181 * 281.59762 * 21 20 19 39 39 H 1.08995 * 110.51137 * 159.18688 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6412 0.0572 2.4766 6 1 1.0798 0.9743 2.3756 7 6 1.9931 -0.4015 3.7283 8 7 2.6772 -1.5180 3.8512 9 14 1.4996 0.5637 5.2495 10 1 0.7420 1.7746 4.8433 11 1 0.6459 -0.2852 6.1189 12 1 2.7178 0.9687 5.9958 13 6 2.0400 -0.7213 -1.2492 14 7 1.6514 0.0374 -2.4457 15 6 2.0109 -0.6903 -3.6701 16 6 3.5126 -0.9817 -3.6976 17 8 4.2377 0.2395 -3.5394 18 6 1.2026 -2.0028 -3.7770 19 6 0.3883 -1.8373 -5.0792 20 8 1.1366 -0.8829 -5.8635 21 6 1.5926 0.1147 -4.9206 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8901 25 1 1.6055 -1.7197 1.2952 26 1 3.1263 -0.7993 1.2056 27 1 2.9251 -1.8405 4.7318 28 1 1.6054 -1.7198 -1.2951 29 1 3.1263 -0.7993 -1.2055 30 1 2.0623 0.9589 -2.4388 31 1 3.7655 -1.6624 -2.8849 32 1 3.7764 -1.4399 -4.6508 33 1 5.1985 0.1303 -3.5476 34 1 1.8729 -2.8590 -3.8518 35 1 0.5366 -2.1119 -2.9209 36 1 0.3176 -2.7889 -5.6060 37 1 -0.6063 -1.4500 -4.8582 38 1 0.7833 0.8026 -4.6758 39 1 2.4460 0.6597 -5.3240 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380240708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:17:59 Heat of formation + Delta-G solvation = -134.352653 kcal Electronic energy + Delta-G solvation = -18404.436993 eV Core-core repulsion = 15538.359626 eV Total energy + Delta-G solvation = -2866.077367 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.02839 -38.24907 -37.35666 -35.46940 -34.01183 -31.42495 -30.07840 -28.61374 -27.07135 -26.29436 -24.41325 -23.55052 -20.74496 -20.46793 -18.48562 -18.32675 -17.66317 -17.01627 -16.52111 -16.33105 -16.18125 -15.48259 -15.33809 -15.14658 -14.58166 -14.23950 -13.72266 -13.46875 -13.24814 -13.07636 -13.00872 -12.76830 -12.63621 -12.27192 -12.22638 -12.15182 -11.94000 -11.75597 -11.45598 -11.11251 -11.00924 -10.90357 -10.67997 -10.53753 -9.35031 -8.17664 -6.26381 1.39770 1.40476 1.53449 2.42093 2.87152 3.04649 3.16039 3.46353 3.56325 3.84264 4.06320 4.14806 4.23238 4.31325 4.38386 4.44665 4.51688 4.60417 4.75016 4.82841 4.85372 4.90921 4.94102 4.98458 5.02624 5.08538 5.29292 5.47294 5.51761 5.56359 5.71673 5.82155 5.89472 6.11565 6.32343 6.45127 6.76970 6.89678 7.41993 8.94646 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.040151 B = 0.004769 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.192015 B = 5869.463321 C = 6094.210628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.072 4.072 3 H 0.048 0.952 4 C 0.034 3.966 5 C -0.527 4.527 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.960 3.040 10 H -0.263 1.263 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.080 3.920 14 N -0.660 5.660 15 C 0.081 3.919 16 C 0.056 3.944 17 O -0.584 6.584 18 C -0.145 4.145 19 C 0.049 3.951 20 O -0.392 6.392 21 C 0.064 3.936 22 H 0.036 0.964 23 H 0.035 0.965 24 H 0.066 0.934 25 H -0.009 1.009 26 H -0.016 1.016 27 H 0.262 0.738 28 H 0.065 0.935 29 H 0.017 0.983 30 H 0.346 0.654 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.397 0.603 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.110 0.890 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.949 0.324 -17.682 17.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.091 4.091 3 H 0.067 0.933 4 C -0.004 4.004 5 C -0.565 4.565 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.785 3.215 10 H -0.186 1.186 11 H -0.205 1.205 12 H -0.206 1.206 13 C -0.049 4.049 14 N -0.291 5.291 15 C -0.011 4.011 16 C -0.023 4.023 17 O -0.392 6.392 18 C -0.183 4.183 19 C -0.027 4.027 20 O -0.311 6.311 21 C -0.013 4.013 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.085 0.915 25 H 0.009 0.991 26 H 0.002 0.998 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.036 0.964 30 H 0.165 0.835 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.247 0.753 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.128 0.872 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.099 0.227 -17.775 17.900 hybrid contribution 1.634 -0.020 1.438 2.177 sum -0.465 0.207 -16.337 16.345 Atomic orbital electron populations 1.21477 0.94636 1.00387 1.00440 1.20974 0.96694 0.98267 0.93158 0.93309 1.19003 0.93971 0.94696 0.92730 1.21667 1.34234 1.08516 0.92106 0.92230 1.25929 0.95267 0.96086 1.02587 1.70104 1.40370 1.23008 1.24196 0.85469 0.78068 0.78917 0.79044 1.18647 1.20491 1.20557 1.21830 0.96568 0.97277 0.89182 1.60699 1.62535 1.05878 0.99968 1.22412 0.91860 0.95180 0.91624 1.22815 0.92722 0.86611 1.00201 1.86352 1.24258 1.31889 1.96688 1.23015 0.99433 0.96120 0.99704 1.23500 0.94826 0.93823 0.90573 1.89114 1.71821 1.38161 1.32000 1.23396 0.99782 0.90958 0.87166 0.94441 0.94547 0.91500 0.99073 0.99759 0.92958 0.91634 0.96437 0.83528 0.93945 0.91932 0.75298 0.89781 0.89616 0.87200 0.91544 0.91159 0.88470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.26 8.89 71.98 0.64 -3.62 16 2 C -0.07 -2.95 2.52 -10.80 -0.03 -2.98 16 3 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 4 C 0.03 1.77 4.45 29.85 0.13 1.90 16 5 C -0.53 -29.98 8.41 25.60 0.22 -29.77 16 6 H 0.06 3.29 7.06 -2.91 -0.02 3.27 16 7 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 8 N -0.94 -57.27 13.29 21.45 0.28 -56.98 16 9 Si 0.96 44.67 29.54 68.60 2.03 46.70 16 10 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 C 0.08 2.72 4.26 86.30 0.37 3.09 16 14 N -0.66 -18.40 5.41 -465.15 -2.52 -20.92 16 15 C 0.08 1.92 0.72 4.54 0.00 1.93 16 16 C 0.06 1.25 5.12 71.98 0.37 1.62 16 17 O -0.58 -12.93 12.69 -148.98 -1.89 -14.82 16 18 C -0.14 -3.10 5.82 31.61 0.18 -2.91 16 19 C 0.05 0.95 7.64 72.48 0.55 1.50 16 20 O -0.39 -9.22 11.65 -148.98 -1.74 -10.96 16 21 C 0.06 1.45 6.83 72.49 0.49 1.94 16 22 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 23 H 0.04 1.48 6.95 -2.39 -0.02 1.47 16 24 H 0.07 2.21 7.75 -2.38 -0.02 2.19 16 25 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 26 H -0.02 -0.92 8.14 -2.38 -0.02 -0.94 16 27 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 28 H 0.07 2.22 6.56 -2.39 -0.02 2.20 16 29 H 0.02 0.63 6.78 -2.39 -0.02 0.61 16 30 H 0.35 9.90 8.35 -89.69 -0.75 9.15 16 31 H 0.04 1.02 6.88 -2.39 -0.02 1.01 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.40 5.60 9.12 -74.06 -0.68 4.92 16 34 H 0.08 1.61 7.73 -2.39 -0.02 1.59 16 35 H 0.09 2.03 6.87 -2.38 -0.02 2.02 16 36 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.07 1.60 8.06 -2.38 -0.02 1.58 16 39 H 0.10 2.13 7.57 -2.39 -0.02 2.11 16 Total: -1.00 -65.68 308.99 -0.82 -66.51 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -0.39 Total: 17.41 kcal Atomic # 6 Polarization: -30.33 SS G_CDS: 3.39 Total: -26.94 kcal Atomic # 7 Polarization: -75.67 SS G_CDS: -2.23 Total: -77.90 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -3.63 Total: -25.78 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -65.68 -0.82 -66.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380240708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.847 kcal (2) G-P(sol) polarization free energy of solvation -65.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds