Wall clock time and date at job start Thu Apr 9 2020 12:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47438 * 2 1 4 4 O 1.42903 * 109.46998 * 239.99903 * 2 1 3 5 5 C 1.53003 * 109.47314 * 120.00373 * 2 1 3 6 6 N 1.46891 * 109.47445 * 184.99787 * 5 2 1 7 7 C 1.46899 * 111.00312 * 189.99399 * 6 5 2 8 8 C 1.53009 * 109.46590 * 75.98719 * 7 6 5 9 9 O 1.42892 * 109.47045 * 64.40661 * 8 7 6 10 10 C 1.42900 * 113.99810 * 175.04836 * 9 8 7 11 11 C 1.50705 * 109.47085 * 184.95397 * 10 9 8 12 12 H 1.08004 * 119.99968 * 355.02268 * 11 10 9 13 13 C 1.37878 * 119.99947 * 175.03001 * 11 10 9 14 14 N 1.31505 * 120.00038 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99781 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.46824 * 90.00286 * 15 13 11 17 17 H 1.48508 * 109.46901 * 209.99942 * 15 13 11 18 18 H 1.48502 * 109.47337 * 329.99787 * 15 13 11 19 19 C 1.46907 * 110.99794 * 66.04498 * 6 5 2 20 20 C 1.53000 * 117.49645 * 254.24521 * 19 6 5 21 21 C 1.53004 * 60.00184 * 252.51354 * 20 19 6 22 22 H 1.08995 * 109.46452 * 60.00021 * 1 2 3 23 23 H 1.08993 * 109.46900 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46720 * 300.00230 * 1 2 3 25 25 H 0.96703 * 113.99991 * 60.00049 * 4 2 1 26 26 H 1.09001 * 109.47186 * 64.99288 * 5 2 1 27 27 H 1.09005 * 109.46621 * 304.99797 * 5 2 1 28 28 H 1.08999 * 109.47084 * 315.98799 * 7 6 5 29 29 H 1.08998 * 109.47504 * 195.98435 * 7 6 5 30 30 H 1.08996 * 109.46995 * 304.40076 * 8 7 6 31 31 H 1.09000 * 109.46816 * 184.40490 * 8 7 6 32 32 H 1.08996 * 109.47092 * 304.94631 * 10 9 8 33 33 H 1.08992 * 109.47481 * 64.95233 * 10 9 8 34 34 H 0.97003 * 120.00242 * 180.02562 * 14 13 11 35 35 H 1.08993 * 115.55259 * 39.95143 * 19 6 5 36 36 H 1.09000 * 117.50192 * 359.97438 * 20 19 6 37 37 H 1.08998 * 117.50036 * 145.02142 * 20 19 6 38 38 H 1.09000 * 117.49304 * 252.51609 * 21 20 19 39 39 H 1.08997 * 117.50318 * 107.49039 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.0401 -0.7213 1.2492 6 7 3.5041 -0.6177 1.3111 7 6 4.0499 -1.4915 2.3582 8 6 4.0293 -2.9426 1.8734 9 8 4.9047 -3.0830 0.7528 10 6 5.0456 -4.4276 0.2902 11 6 6.0772 -4.4757 -0.8074 12 1 6.5168 -3.5606 -1.1758 13 6 6.4597 -5.6880 -1.3414 14 7 5.9247 -6.8023 -0.8926 15 14 7.7378 -5.7475 -2.7024 16 1 9.0921 -5.8650 -2.1047 17 1 7.4781 -6.9213 -3.5744 18 1 7.6593 -4.5038 -3.5100 19 6 3.9251 0.7748 1.5152 20 6 4.5225 1.5150 0.3169 21 6 5.4251 1.0730 1.4705 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5139 0.8899 25 1 1.7210 -0.2701 -1.9980 26 1 1.7517 -1.7716 1.2056 27 1 1.6055 -0.2618 2.1370 28 1 3.4438 -1.4009 3.2595 29 1 5.0758 -1.1969 2.5791 30 1 3.0153 -3.2127 1.5785 31 1 4.3607 -3.5992 2.6779 32 1 5.3636 -5.0644 1.1156 33 1 4.0892 -4.7817 -0.0944 34 1 6.1940 -7.6553 -1.2679 35 1 3.3177 1.3523 2.2120 36 1 4.6036 0.9687 -0.6228 37 1 4.3081 2.5798 0.2251 38 1 5.8044 1.8470 2.1377 39 1 6.0995 0.2360 1.2898 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594063607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:17:42 Heat of formation + Delta-G solvation = -69.058084 kcal Electronic energy + Delta-G solvation = -18258.635985 eV Core-core repulsion = 15395.390003 eV Total energy + Delta-G solvation = -2863.245982 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.87441 -36.79699 -36.32696 -34.00408 -32.55068 -31.21378 -28.75704 -26.73637 -25.37536 -22.39870 -22.12389 -21.60651 -21.29076 -19.79504 -17.18744 -16.36827 -16.25097 -15.61072 -15.25230 -14.58465 -14.29044 -14.25093 -13.97617 -13.54069 -12.95571 -12.81282 -12.46664 -12.35617 -11.94969 -11.84272 -11.57584 -11.25195 -11.06750 -10.73233 -10.70203 -10.65063 -10.36092 -10.22265 -10.00633 -9.81650 -9.64871 -8.95439 -8.64802 -8.00879 -7.91051 -5.99028 -3.98984 3.38003 3.42323 3.49096 3.87188 3.98197 4.42061 4.46086 4.88045 5.01176 5.06762 5.10305 5.15605 5.27462 5.31801 5.37532 5.46262 5.57409 5.68019 5.76243 5.81789 5.86955 5.88307 5.94110 6.07246 6.17261 6.24194 6.26955 6.43639 6.48906 7.25220 7.34057 7.42917 7.59901 7.93488 7.96524 8.31592 8.78565 9.16891 9.65317 11.12874 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.022500 B = 0.005632 C = 0.005404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.118886 B = 4970.798043 C = 5179.832562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.108 3.892 3 H 0.053 0.947 4 O -0.540 6.540 5 C 0.065 3.935 6 N -0.485 5.485 7 C 0.062 3.938 8 C 0.070 3.930 9 O -0.376 6.376 10 C 0.194 3.806 11 C -0.505 4.505 12 H 0.066 0.934 13 C 0.054 3.946 14 N -0.902 5.902 15 Si 0.906 3.094 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.272 1.272 19 C 0.002 3.998 20 C -0.162 4.162 21 C -0.172 4.172 22 H 0.057 0.943 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.366 0.634 26 H 0.084 0.916 27 H 0.039 0.961 28 H 0.037 0.963 29 H 0.081 0.919 30 H 0.033 0.967 31 H 0.037 0.963 32 H 0.003 0.997 33 H -0.001 1.001 34 H 0.262 0.738 35 H 0.078 0.922 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.039 16.151 5.371 19.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.048 3.952 3 H 0.071 0.929 4 O -0.343 6.343 5 C -0.063 4.063 6 N -0.209 5.209 7 C -0.066 4.066 8 C -0.008 4.008 9 O -0.295 6.295 10 C 0.120 3.880 11 C -0.544 4.544 12 H 0.084 0.916 13 C -0.146 4.146 14 N -0.542 5.542 15 Si 0.733 3.267 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.196 1.196 19 C -0.107 4.107 20 C -0.200 4.200 21 C -0.210 4.210 22 H 0.076 0.924 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.211 0.789 26 H 0.102 0.898 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.021 0.979 33 H 0.017 0.983 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.124 0.876 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.467 15.545 5.270 18.469 hybrid contribution -0.240 0.177 -0.140 0.330 sum -8.708 15.722 5.130 18.690 Atomic orbital electron populations 1.22536 0.97136 1.02841 1.01994 1.21693 0.91265 0.95331 0.86883 0.92922 1.86824 1.76512 1.56220 1.14728 1.22153 0.87758 1.01769 0.94654 1.61586 1.08673 1.04125 1.46519 1.22159 1.00329 0.93060 0.91027 1.22209 0.94261 0.93911 0.90426 1.87952 1.64593 1.30886 1.46081 1.20151 0.95870 0.78022 0.93964 1.21076 1.22072 0.93116 1.18118 0.91603 1.24940 0.96997 0.95204 0.97487 1.69968 1.43493 0.97693 1.43028 0.86366 0.81225 0.77609 0.81458 1.20591 1.21194 1.19625 1.22386 0.96289 0.90818 1.01168 1.23044 1.03286 0.98857 0.94811 1.23045 0.92621 1.03419 1.01870 0.92358 0.91692 0.92101 0.78865 0.89776 0.94265 0.94467 0.90024 0.94909 0.94517 0.97871 0.98277 0.92852 0.90408 0.87636 0.89627 0.89273 0.87581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.82 9.54 37.16 0.35 -1.46 16 2 C 0.11 1.35 3.56 -26.73 -0.10 1.26 16 3 H 0.05 0.62 6.72 -51.93 -0.35 0.27 16 4 O -0.54 -8.32 13.27 -35.23 -0.47 -8.79 16 5 C 0.06 0.91 4.44 -3.83 -0.02 0.89 16 6 N -0.49 -7.79 4.46 -226.64 -1.01 -8.80 16 7 C 0.06 1.00 5.34 -3.82 -0.02 0.98 16 8 C 0.07 1.41 6.13 37.16 0.23 1.64 16 9 O -0.38 -9.74 10.26 -35.23 -0.36 -10.10 16 10 C 0.19 5.66 5.70 36.01 0.21 5.87 16 11 C -0.51 -15.64 9.43 -34.44 -0.32 -15.96 16 12 H 0.07 2.04 7.81 -52.48 -0.41 1.63 16 13 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -28.00 13.29 55.43 0.74 -27.26 16 15 Si 0.91 22.70 29.54 -169.99 -5.02 17.67 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 19 C 0.00 0.03 4.18 -67.71 -0.28 -0.25 16 20 C -0.16 -2.09 9.84 -26.73 -0.26 -2.35 16 21 C -0.17 -2.25 9.55 -26.73 -0.26 -2.51 16 22 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.37 3.95 9.08 45.56 0.41 4.37 16 26 H 0.08 1.32 6.59 -51.93 -0.34 0.98 16 27 H 0.04 0.46 8.09 -51.93 -0.42 0.04 16 28 H 0.04 0.51 8.00 -51.93 -0.42 0.09 16 29 H 0.08 1.34 6.79 -51.93 -0.35 0.98 16 30 H 0.03 0.66 6.69 -51.93 -0.35 0.31 16 31 H 0.04 0.70 8.12 -51.93 -0.42 0.28 16 32 H 0.00 0.10 8.12 -51.93 -0.42 -0.32 16 33 H 0.00 -0.02 8.14 -51.93 -0.42 -0.44 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.08 0.91 8.09 -51.93 -0.42 0.48 16 36 H 0.11 1.62 8.14 -51.93 -0.42 1.19 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.11 1.65 7.72 -51.93 -0.40 1.25 16 LS Contribution 322.40 15.07 4.86 4.86 Total: -1.00 -34.53 322.40 -7.81 -42.35 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -5.98 Total: 0.44 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -0.57 Total: -10.37 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: -0.27 Total: -36.06 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.83 Total: -18.89 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.53 -7.81 -42.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594063607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.709 kcal (2) G-P(sol) polarization free energy of solvation -34.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds