Wall clock time and date at job start Thu Apr 9 2020 12:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42895 * 109.47503 * 2 1 4 4 C 1.42902 * 114.00370 * 179.97438 * 3 2 1 5 5 C 1.53109 * 109.52324 * 269.87241 * 4 3 2 6 6 C 1.53049 * 109.27751 * 182.50336 * 5 4 3 7 7 N 1.46843 * 109.57237 * 59.08023 * 6 5 4 8 8 C 1.46908 * 110.99879 * 174.19598 * 7 6 5 9 9 C 1.53001 * 109.46771 * 314.21131 * 8 7 6 10 10 H 1.09005 * 109.47155 * 60.00208 * 9 8 7 11 11 O 1.42904 * 109.47450 * 300.00094 * 9 8 7 12 12 C 1.50696 * 109.47040 * 179.97438 * 9 8 7 13 13 H 1.08005 * 120.00122 * 0.02562 * 12 9 8 14 14 C 1.37872 * 120.00627 * 180.02562 * 12 9 8 15 15 N 1.31518 * 119.99560 * 359.97438 * 14 12 9 16 16 Si 1.86794 * 120.00639 * 179.97438 * 14 12 9 17 17 H 1.48504 * 109.46815 * 60.00283 * 16 14 12 18 18 H 1.48500 * 109.47537 * 179.97438 * 16 14 12 19 19 H 1.48491 * 109.47489 * 300.00187 * 16 14 12 20 20 C 1.46845 * 111.20303 * 298.29170 * 7 6 5 21 21 C 1.53044 * 109.52147 * 61.74367 * 20 7 6 22 22 H 1.09002 * 109.47153 * 60.00043 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.00234 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 119.99957 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99586 * 2 1 3 27 27 H 1.08997 * 109.52228 * 30.00024 * 4 3 2 28 28 H 1.09002 * 109.50557 * 302.38228 * 5 4 3 29 29 H 1.09000 * 109.50838 * 62.49917 * 5 4 3 30 30 H 1.08999 * 109.40879 * 299.06885 * 6 5 4 31 31 H 1.08994 * 109.45473 * 179.13000 * 6 5 4 32 32 H 1.08998 * 109.46883 * 74.21235 * 8 7 6 33 33 H 1.08998 * 109.46728 * 194.21274 * 8 7 6 34 34 H 0.96707 * 113.99573 * 300.00034 * 11 9 8 35 35 H 0.97000 * 120.00154 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.46266 * 301.73051 * 20 7 6 37 37 H 1.08996 * 109.45703 * 181.75133 * 20 7 6 38 38 H 1.08991 * 109.50167 * 180.88120 * 21 20 7 39 39 H 1.08994 * 109.53437 * 60.77830 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.9402 1.5038 1.4438 6 6 5.4596 1.6875 1.4382 7 7 5.8020 2.9331 0.7400 8 6 7.2413 3.2112 0.8348 9 6 7.7076 2.9996 2.2766 10 1 7.5166 1.9680 2.5726 11 8 6.9935 3.8837 3.1429 12 6 9.1843 3.2843 2.3739 13 1 9.7350 3.5864 1.4953 14 6 9.8323 3.1591 3.5843 15 7 9.1616 2.7917 4.6543 16 14 11.6628 3.5114 3.7048 17 1 11.9240 4.9166 3.3017 18 1 12.1155 3.3061 5.1041 19 1 12.4041 2.5922 2.8044 20 6 5.3649 2.8938 -0.6614 21 6 3.8425 2.7478 -0.7184 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 3.8645 0.6018 -0.5128 28 1 3.4756 2.3387 1.9685 29 1 3.6873 0.5708 1.9475 30 1 5.9244 0.8448 0.9265 31 1 5.8234 1.7346 2.4646 32 1 7.7860 2.5369 0.1741 33 1 7.4323 4.2428 0.5389 34 1 7.1173 4.8206 2.9376 35 1 9.6176 2.7033 5.5059 36 1 5.8301 2.0454 -1.1633 37 1 5.6600 3.8171 -1.1598 38 1 3.5200 2.7029 -1.7585 39 1 3.3758 3.6027 -0.2291 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929327310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:17:30 Heat of formation + Delta-G solvation = -103.451773 kcal Electronic energy + Delta-G solvation = -18301.261509 eV Core-core repulsion = 15436.524105 eV Total energy + Delta-G solvation = -2864.737404 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.25204 -37.40819 -35.30470 -32.50158 -32.05753 -30.59514 -30.57231 -27.82702 -24.86352 -23.26841 -23.00265 -22.24363 -20.24841 -19.37207 -17.18404 -16.69854 -15.67377 -15.30525 -14.77389 -14.59186 -14.45111 -14.02738 -13.65878 -13.57938 -13.33550 -12.91772 -12.46929 -12.26843 -12.08628 -11.72061 -11.55870 -11.13436 -11.04834 -10.89845 -10.86610 -10.82450 -10.54693 -10.44190 -10.27106 -10.04342 -9.35323 -8.86700 -8.53746 -8.05438 -7.66757 -6.00598 -4.18785 3.28800 3.34239 3.35818 3.66470 4.33601 4.51637 4.91034 4.91597 5.07855 5.13207 5.24622 5.27142 5.31293 5.42565 5.49913 5.63017 5.76489 5.79297 5.83786 5.95324 5.96036 6.04816 6.10186 6.21511 6.30354 6.34764 6.45545 6.58256 6.64697 6.84949 7.31350 7.59720 7.68886 7.79010 7.85748 8.20482 8.84491 9.45569 9.61536 11.03568 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.051062 B = 0.004574 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.217859 B = 6119.740216 C = 6397.080757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.384 6.384 4 C 0.091 3.909 5 C -0.134 4.134 6 C 0.055 3.945 7 N -0.529 5.529 8 C 0.030 3.970 9 C 0.230 3.770 10 H 0.058 0.942 11 O -0.556 6.556 12 C -0.575 4.575 13 H 0.054 0.946 14 C 0.080 3.920 15 N -0.859 5.859 16 Si 0.890 3.110 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.277 1.277 20 C 0.056 3.944 21 C -0.109 4.109 22 H 0.061 0.939 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.047 0.953 26 H 0.044 0.956 27 H 0.052 0.948 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.021 0.979 31 H 0.101 0.899 32 H 0.026 0.974 33 H 0.065 0.935 34 H 0.345 0.655 35 H 0.261 0.739 36 H 0.025 0.975 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.021 -4.174 -9.710 16.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.304 6.304 4 C 0.033 3.967 5 C -0.172 4.172 6 C -0.073 4.073 7 N -0.253 5.253 8 C -0.097 4.097 9 C 0.172 3.828 10 H 0.075 0.925 11 O -0.358 6.358 12 C -0.614 4.614 13 H 0.072 0.928 14 C -0.126 4.126 15 N -0.495 5.495 16 Si 0.717 3.283 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.072 4.072 21 C -0.147 4.147 22 H 0.080 0.920 23 H 0.082 0.918 24 H 0.086 0.914 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.039 0.961 31 H 0.119 0.881 32 H 0.044 0.956 33 H 0.084 0.916 34 H 0.189 0.811 35 H 0.071 0.929 36 H 0.043 0.957 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.580 -4.261 -9.009 16.050 hybrid contribution 1.950 -0.301 -0.647 2.076 sum -10.631 -4.561 -9.656 15.068 Atomic orbital electron populations 1.21736 0.94025 1.01945 1.03031 1.22453 0.95332 0.84430 0.99839 1.87906 1.21512 1.25847 1.95137 1.22209 0.80254 0.97934 0.96295 1.22072 0.96492 1.02302 0.96315 1.22145 0.93877 0.89770 1.01531 1.61957 1.17718 1.34170 1.11473 1.23058 0.84734 0.99997 1.01948 1.19435 0.89655 0.91437 0.82280 0.92487 1.86536 1.72500 1.17637 1.59095 1.21623 0.94527 1.50039 0.95179 0.92760 1.25018 0.97873 0.93967 0.95766 1.70065 1.35565 1.44317 0.99533 0.86726 0.85557 0.78947 0.77065 1.20116 1.21189 1.20242 1.22048 0.94081 1.00422 0.90681 1.21614 0.95702 0.97575 0.99778 0.92037 0.91825 0.91392 0.93462 0.93809 0.92973 0.90186 0.92098 0.96053 0.88079 0.95615 0.91638 0.81123 0.92926 0.95681 0.90702 0.91672 0.90251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.28 37.16 0.38 -0.95 16 2 C 0.06 0.61 6.47 37.16 0.24 0.85 16 3 O -0.38 -5.34 9.99 -35.23 -0.35 -5.69 16 4 C 0.09 1.27 2.68 -26.61 -0.07 1.20 16 5 C -0.13 -2.09 5.72 -26.65 -0.15 -2.24 16 6 C 0.05 1.00 4.85 -3.83 -0.02 0.98 16 7 N -0.53 -9.79 4.67 -234.66 -1.10 -10.88 16 8 C 0.03 0.62 4.88 -3.82 -0.02 0.61 16 9 C 0.23 5.77 2.11 -27.88 -0.06 5.71 16 10 H 0.06 1.56 6.21 -51.93 -0.32 1.24 16 11 O -0.56 -14.37 12.40 -35.23 -0.44 -14.81 16 12 C -0.58 -15.75 8.76 -34.44 -0.30 -16.06 16 13 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 14 C 0.08 2.23 5.40 -17.82 -0.10 2.14 16 15 N -0.86 -25.32 12.84 55.43 0.71 -24.61 16 16 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 C 0.06 0.86 5.42 -3.83 -0.02 0.84 16 21 C -0.11 -1.50 5.75 -26.65 -0.15 -1.66 16 22 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.50 7.95 -51.93 -0.41 0.09 16 26 H 0.04 0.43 8.09 -51.93 -0.42 0.01 16 27 H 0.05 0.69 7.79 -51.93 -0.40 0.29 16 28 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.06 0.87 7.95 -51.93 -0.41 0.46 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.10 2.16 5.66 -51.93 -0.29 1.86 16 32 H 0.03 0.53 8.08 -51.93 -0.42 0.11 16 33 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.35 8.12 9.04 45.56 0.41 8.53 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 1.07 8.12 -51.93 -0.42 0.65 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 311.28 15.07 4.69 4.69 Total: -1.00 -29.99 311.28 -7.81 -37.80 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -6.04 Total: 5.98 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -0.27 Total: -8.59 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: -0.39 Total: -35.49 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.79 Total: -20.49 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.99 -7.81 -37.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929327310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.648 kcal (2) G-P(sol) polarization free energy of solvation -29.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds