Wall clock time and date at job start Thu Apr 9 2020 12:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47448 * 2 1 4 4 C 1.53001 * 109.47448 * 179.97438 * 3 2 1 5 5 N 1.46906 * 110.45586 * 59.29690 * 4 3 2 6 6 C 1.46901 * 110.99793 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.46769 * 180.02562 * 6 5 4 8 8 H 1.08992 * 109.47399 * 59.99697 * 7 6 5 9 9 O 1.42900 * 109.47041 * 299.99294 * 7 6 5 10 10 C 1.50706 * 109.46735 * 180.02562 * 7 6 5 11 11 H 1.07996 * 119.99928 * 359.97438 * 10 7 6 12 12 C 1.37880 * 119.99611 * 179.97438 * 10 7 6 13 13 N 1.31511 * 120.00327 * 359.97438 * 12 10 7 14 14 Si 1.86803 * 119.99743 * 179.97438 * 12 10 7 15 15 H 1.48500 * 109.46999 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46979 * 120.00025 * 14 12 10 17 17 H 1.48498 * 109.46942 * 239.99938 * 14 12 10 18 18 C 1.54510 * 110.51381 * 181.90129 * 4 3 2 19 19 C 1.54483 * 104.05997 * 118.78318 * 18 4 3 20 20 O 1.44420 * 104.80751 * 23.97794 * 19 18 4 21 21 C 1.44790 * 105.29298 * 319.45543 * 20 19 18 22 22 H 1.09003 * 109.46767 * 60.00055 * 1 2 3 23 23 H 1.08996 * 109.47304 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47014 * 300.00523 * 1 2 3 25 25 H 1.09003 * 109.47318 * 239.99474 * 2 1 3 26 26 H 1.09003 * 109.46767 * 119.99945 * 2 1 3 27 27 H 1.08995 * 109.47440 * 59.99738 * 3 2 1 28 28 H 1.09003 * 109.47092 * 299.99746 * 3 2 1 29 29 H 1.00899 * 110.99995 * 56.04824 * 5 4 3 30 30 H 1.09002 * 109.47401 * 59.99808 * 6 5 4 31 31 H 1.09001 * 109.46874 * 299.99821 * 6 5 4 32 32 H 0.96698 * 114.00516 * 300.00983 * 9 7 6 33 33 H 0.97000 * 120.00354 * 180.02562 * 13 12 10 34 34 H 1.08996 * 110.51316 * 237.42360 * 18 4 3 35 35 H 1.08994 * 110.51022 * 0.13698 * 18 4 3 36 36 H 1.08997 * 110.36959 * 142.81551 * 19 18 4 37 37 H 1.09005 * 110.36647 * 265.14492 * 19 18 4 38 38 H 1.09003 * 110.42717 * 281.77518 * 21 20 19 39 39 H 1.09003 * 110.48912 * 159.32372 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0840 0.7394 -1.1825 6 6 5.5529 0.7318 -1.1935 7 6 6.0497 -0.0068 -2.4380 8 1 5.6823 0.4983 -3.3312 9 8 5.5666 -1.3515 -2.4183 10 6 7.5567 -0.0151 -2.4489 11 1 8.1052 0.4593 -1.6486 12 6 8.2351 -0.6285 -3.4807 13 7 7.5672 -1.2066 -4.4550 14 14 10.1031 -0.6382 -3.4947 15 1 10.6108 0.0735 -2.2944 16 1 10.5908 -2.0408 -3.4812 17 1 10.5924 0.0442 -4.7195 18 6 4.1115 2.8887 0.0487 19 6 4.9183 2.9440 1.3650 20 8 5.2829 1.5723 1.6322 21 6 4.1108 0.7927 1.2936 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.6768 1.9563 0.8899 28 1 1.6768 1.9563 -0.8900 29 1 3.7178 1.1443 -2.0311 30 1 5.9204 0.2271 -0.3000 31 1 5.9215 1.7575 -1.2089 32 1 5.8550 -1.8619 -1.6493 33 1 8.0445 -1.6384 -5.1807 34 1 4.7605 3.0822 -0.8054 35 1 3.2892 3.6037 0.0744 36 1 5.8111 3.5560 1.2373 37 1 4.3003 3.3366 2.1725 38 1 3.3686 0.8564 2.0894 39 1 4.3836 -0.2467 1.1106 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930460607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:17:35 Heat of formation + Delta-G solvation = -107.634650 kcal Electronic energy + Delta-G solvation = -18768.756037 eV Core-core repulsion = 15903.837249 eV Total energy + Delta-G solvation = -2864.918787 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.96733 -36.15575 -35.33774 -33.24392 -32.01713 -30.61494 -29.15824 -27.23056 -25.88040 -24.04861 -22.82801 -21.24462 -20.39533 -19.31594 -16.88876 -16.32103 -15.70415 -15.38480 -14.89265 -14.57006 -14.33004 -14.16270 -13.73332 -13.23525 -13.13860 -12.74357 -12.56579 -12.42675 -11.88075 -11.58009 -11.35086 -11.22062 -11.07997 -10.89652 -10.78648 -10.63359 -10.57971 -10.36622 -10.26027 -9.97624 -9.59194 -8.89685 -8.52798 -8.01578 -7.71356 -5.95441 -4.12795 3.29984 3.38178 3.42440 4.12648 4.38730 4.53120 4.79742 4.93423 5.01514 5.13055 5.22867 5.27936 5.32482 5.39565 5.54683 5.70039 5.75929 5.81279 5.84149 5.92066 5.94986 6.01481 6.12385 6.15826 6.34336 6.40970 6.42343 6.60428 6.62428 6.96609 7.00373 7.63800 7.75376 7.90863 7.99963 8.27981 8.91796 9.51941 9.68376 11.08829 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.027662 B = 0.006350 C = 0.005506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.968051 B = 4408.725820 C = 5084.236580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.098 4.098 4 C 0.084 3.916 5 N -0.660 5.660 6 C 0.034 3.966 7 C 0.234 3.766 8 H 0.048 0.952 9 O -0.556 6.556 10 C -0.569 4.569 11 H 0.055 0.945 12 C 0.079 3.921 13 N -0.860 5.860 14 Si 0.887 3.113 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.284 1.284 18 C -0.190 4.190 19 C 0.049 3.951 20 O -0.372 6.372 21 C 0.057 3.943 22 H 0.050 0.950 23 H 0.051 0.949 24 H 0.046 0.954 25 H 0.083 0.917 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.336 0.664 30 H 0.069 0.931 31 H 0.024 0.976 32 H 0.343 0.657 33 H 0.259 0.741 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.969 6.498 10.150 16.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.136 4.136 4 C -0.009 4.009 5 N -0.290 5.290 6 C -0.094 4.094 7 C 0.176 3.824 8 H 0.066 0.934 9 O -0.357 6.357 10 C -0.608 4.608 11 H 0.073 0.927 12 C -0.127 4.127 13 N -0.497 5.497 14 Si 0.715 3.285 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.210 1.210 18 C -0.230 4.230 19 C -0.028 4.028 20 O -0.291 6.291 21 C -0.019 4.019 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.101 0.899 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.155 0.845 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.186 0.814 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.089 5.883 9.767 15.905 hybrid contribution 1.395 1.050 0.113 1.750 sum -9.694 6.933 9.880 15.480 Atomic orbital electron populations 1.21798 0.96758 1.01305 1.01067 1.21453 0.94390 0.96378 1.03499 1.21578 0.92780 0.97804 1.01407 1.22353 0.94700 0.90257 0.93563 1.60648 1.09832 1.55744 1.02791 1.22954 0.84833 0.99198 1.02435 1.19311 0.91886 0.80504 0.90688 0.93417 1.86538 1.75964 1.25547 1.47674 1.21695 0.92229 1.38294 1.08555 0.92661 1.25025 0.98063 0.94483 0.95115 1.70093 1.34945 1.34299 1.10315 0.86643 0.86135 0.77811 0.77954 1.19719 1.20883 1.20985 1.23766 1.00582 0.99138 0.99513 1.23266 0.99118 0.85147 0.95318 1.89232 1.35418 1.17014 1.87413 1.23549 0.87302 0.97253 0.93846 0.93044 0.92946 0.93493 0.89868 0.92401 0.92207 0.91989 0.84544 0.91250 0.95822 0.81419 0.93151 0.90095 0.90879 0.89594 0.92905 0.92502 0.88063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 37.16 0.37 -1.15 16 2 C -0.12 -1.42 5.59 -26.73 -0.15 -1.56 16 3 C -0.10 -1.13 4.13 -26.73 -0.11 -1.24 16 4 C 0.08 1.17 0.74 -130.03 -0.10 1.07 16 5 N -0.66 -11.30 5.27 -98.37 -0.52 -11.81 16 6 C 0.03 0.71 4.23 -3.82 -0.02 0.69 16 7 C 0.23 5.97 3.03 -27.88 -0.08 5.88 16 8 H 0.05 1.33 8.14 -51.93 -0.42 0.91 16 9 O -0.56 -14.54 12.59 -35.23 -0.44 -14.99 16 10 C -0.57 -15.91 8.76 -34.44 -0.30 -16.21 16 11 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 12 C 0.08 2.24 5.40 -17.82 -0.10 2.15 16 13 N -0.86 -25.82 12.84 55.43 0.71 -25.10 16 14 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 15 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 C -0.19 -2.50 5.89 -25.16 -0.15 -2.65 16 19 C 0.05 0.64 7.63 37.94 0.29 0.93 16 20 O -0.37 -6.10 10.59 -35.23 -0.37 -6.47 16 21 C 0.06 0.83 4.99 37.93 0.19 1.02 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.08 1.17 7.64 -51.93 -0.40 0.78 16 26 H 0.06 0.68 7.33 -51.93 -0.38 0.30 16 27 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.34 5.77 8.75 -39.29 -0.34 5.43 16 30 H 0.07 1.51 6.34 -51.93 -0.33 1.18 16 31 H 0.02 0.50 6.21 -51.93 -0.32 0.18 16 32 H 0.34 8.21 9.04 45.56 0.41 8.62 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.08 1.20 6.29 -51.93 -0.33 0.88 16 35 H 0.07 0.80 7.73 -51.93 -0.40 0.40 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.71 7.80 -51.93 -0.40 0.30 16 39 H 0.10 1.60 7.58 -51.93 -0.39 1.21 16 LS Contribution 308.32 15.07 4.65 4.65 Total: -1.00 -30.50 308.32 -6.96 -37.47 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -5.81 Total: 10.80 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -0.16 Total: -11.06 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.19 Total: -36.92 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.82 Total: -21.46 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.50 -6.96 -37.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930460607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.168 kcal (2) G-P(sol) polarization free energy of solvation -30.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds