Wall clock time and date at job start Thu Apr 9 2020 12:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34947 * 126.08287 * 2 1 4 4 H 0.96997 * 125.99034 * 0.02562 * 3 2 1 5 5 N 1.40079 * 108.01857 * 179.79946 * 3 2 1 6 6 C 1.31111 * 108.18615 * 0.38298 * 5 3 2 7 7 O 1.35993 * 125.95379 * 179.89382 * 6 5 3 8 8 C 1.42894 * 117.00306 * 359.68370 * 7 6 5 9 9 H 1.09003 * 109.46771 * 30.00556 * 8 7 6 10 10 C 1.50695 * 109.47203 * 150.00381 * 8 7 6 11 11 H 1.08008 * 119.99831 * 95.31673 * 10 8 7 12 12 C 1.37872 * 120.00381 * 275.31038 * 10 8 7 13 13 N 1.31522 * 119.99792 * 6.04449 * 12 10 8 14 14 Si 1.86800 * 120.00363 * 186.03628 * 12 10 8 15 15 H 1.48508 * 109.46851 * 270.00048 * 14 12 10 16 16 H 1.48496 * 109.47009 * 30.00273 * 14 12 10 17 17 H 1.48498 * 109.47021 * 150.00676 * 14 12 10 18 18 C 1.53004 * 109.47278 * 270.00759 * 8 7 6 19 19 Cl 1.80301 * 109.47265 * 65.70932 * 18 8 7 20 20 C 1.35281 * 126.08420 * 180.02562 * 2 1 3 21 21 C 1.50703 * 126.06250 * 359.97438 * 20 2 1 22 22 H 1.09000 * 109.46655 * 269.96717 * 1 2 3 23 23 H 1.09000 * 109.47028 * 29.97172 * 1 2 3 24 24 H 1.09006 * 109.47097 * 149.97506 * 1 2 3 25 25 H 0.97000 * 119.99814 * 355.11436 * 13 12 10 26 26 H 1.08998 * 109.47313 * 185.71247 * 18 8 7 27 27 H 1.09007 * 109.46860 * 305.71050 * 18 8 7 28 28 H 1.08997 * 109.46706 * 269.97346 * 21 20 2 29 29 H 1.08993 * 109.47311 * 29.97175 * 21 20 2 30 30 H 1.09004 * 109.47215 * 149.97624 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3018 1.0906 0.0000 4 1 2.0033 2.0135 0.0004 5 7 3.6336 0.6562 0.0047 6 6 3.6364 -0.6549 -0.0010 7 8 4.7389 -1.4510 -0.0010 8 6 6.0103 -0.7985 -0.0014 9 1 5.9272 0.1592 0.5124 10 6 7.0191 -1.6638 0.7089 11 1 7.6543 -2.3287 0.1424 12 6 7.1314 -1.6066 2.0819 13 7 6.2806 -0.8882 2.7818 14 14 8.4916 -2.5496 2.9480 15 1 8.0081 -3.9108 3.2927 16 1 9.6697 -2.6552 2.0502 17 1 8.8780 -1.8324 4.1895 18 6 6.4637 -0.5658 -1.4440 19 17 5.3478 0.6031 -2.2436 20 6 2.3038 -1.0933 -0.0005 21 6 1.8418 -2.5277 -0.0006 22 1 -0.3632 -0.0006 1.0277 23 1 -0.3633 0.8902 -0.5134 24 1 -0.3633 -0.8898 -0.5142 25 1 5.6188 -0.3427 2.3288 26 1 7.4759 -0.1613 -1.4460 27 1 6.4491 -1.5112 -1.9865 28 1 1.7313 -2.8738 1.0271 29 1 0.8829 -2.6006 -0.5136 30 1 2.5772 -3.1463 -0.5152 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226510708.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:17:58 Heat of formation + Delta-G solvation = -15.045085 kcal Electronic energy + Delta-G solvation = -15969.228656 eV Core-core repulsion = 13211.941918 eV Total energy + Delta-G solvation = -2757.286738 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 244.072 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.13401 -39.21921 -36.68959 -35.28056 -33.69982 -32.67451 -31.34858 -28.87432 -26.75526 -26.41940 -24.00288 -21.78499 -20.48239 -19.18642 -18.16259 -17.54419 -16.74503 -16.03747 -15.72823 -15.33217 -14.86204 -14.63125 -14.06886 -13.91134 -13.63979 -13.62089 -13.45843 -12.90895 -12.87990 -12.69081 -12.64566 -12.16515 -11.90714 -11.42225 -11.39413 -11.05439 -10.82936 -10.73253 -9.44747 -9.04024 -8.87004 -6.69135 1.07293 1.37734 1.54220 1.60207 1.80373 1.99194 2.02756 2.48929 2.70323 3.28465 3.95443 4.01433 4.09254 4.15246 4.32419 4.44776 4.58918 4.76261 4.83149 4.95672 5.02645 5.11022 5.19144 5.33627 5.59037 5.61357 5.95364 6.28261 6.57754 6.83351 7.05912 7.22187 8.51380 Molecular weight = 244.07amu Principal moments of inertia in cm(-1) A = 0.023658 B = 0.008729 C = 0.007218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.234338 B = 3206.879045 C = 3878.441648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.112 3.888 3 N -0.469 5.469 4 H 0.447 0.553 5 N -0.363 5.363 6 C 0.252 3.748 7 O -0.317 6.317 8 C 0.189 3.811 9 H 0.024 0.976 10 C -0.615 4.615 11 H 0.070 0.930 12 C -0.015 4.015 13 N -0.906 5.906 14 Si 1.127 2.873 15 H -0.272 1.272 16 H -0.258 1.258 17 H -0.280 1.280 18 C -0.024 4.024 19 Cl -0.199 7.199 20 C -0.292 4.292 21 C -0.055 4.055 22 H 0.094 0.906 23 H 0.094 0.906 24 H 0.100 0.900 25 H 0.259 0.741 26 H 0.106 0.894 27 H 0.091 0.909 28 H 0.051 0.949 29 H 0.091 0.909 30 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.654 0.960 -5.920 11.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.017 4.017 3 N -0.183 5.183 4 H 0.293 0.707 5 N -0.203 5.203 6 C 0.047 3.953 7 O -0.222 6.222 8 C 0.134 3.866 9 H 0.042 0.958 10 C -0.651 4.651 11 H 0.089 0.911 12 C -0.217 4.217 13 N -0.541 5.541 14 Si 0.946 3.054 15 H -0.198 1.198 16 H -0.182 1.182 17 H -0.206 1.206 18 C -0.087 4.087 19 Cl -0.173 7.173 20 C -0.303 4.303 21 C -0.113 4.113 22 H 0.113 0.887 23 H 0.113 0.887 24 H 0.118 0.882 25 H 0.070 0.930 26 H 0.125 0.875 27 H 0.110 0.890 28 H 0.070 0.930 29 H 0.109 0.891 30 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.316 1.354 -4.535 9.569 hybrid contribution -0.955 0.597 -1.534 1.903 sum -9.272 1.951 -6.069 11.252 Atomic orbital electron populations 1.20620 0.83214 1.05560 1.04716 1.21364 0.96231 0.85601 0.98530 1.45672 1.02618 1.08529 1.61484 0.70657 1.77539 0.98054 1.11226 1.33501 1.21142 0.89466 0.89110 0.95540 1.86702 1.13345 1.34376 1.87794 1.20408 0.79772 0.94786 0.91608 0.95797 1.22242 1.18703 1.28889 0.95303 0.91139 1.27744 1.00995 0.97018 0.95968 1.70831 1.17535 1.26116 1.39637 0.82850 0.72539 0.74906 0.75119 1.19767 1.18219 1.20560 1.24989 0.94800 0.93774 0.95156 1.98664 1.69461 1.65946 1.83213 1.19738 0.89065 0.98492 1.23045 1.19904 1.00961 0.89306 1.01088 0.88738 0.88722 0.88187 0.93041 0.87546 0.89032 0.93028 0.89083 0.93980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.42 10.21 71.24 0.73 -0.69 16 2 C 0.11 3.45 7.20 41.40 0.30 3.75 16 3 N -0.47 -15.89 7.35 -48.02 -0.35 -16.25 16 4 H 0.45 11.42 8.96 -213.34 -1.91 9.50 16 5 N -0.36 -16.56 9.69 -170.49 -1.65 -18.22 16 6 C 0.25 12.19 6.89 85.30 0.59 12.77 16 7 O -0.32 -17.26 9.83 -93.47 -0.92 -18.18 16 8 C 0.19 10.10 1.83 29.85 0.05 10.15 16 9 H 0.02 1.43 6.12 -2.39 -0.01 1.42 16 10 C -0.62 -34.50 8.69 25.60 0.22 -34.27 16 11 H 0.07 3.75 7.82 -2.91 -0.02 3.73 16 12 C -0.01 -0.84 5.45 84.65 0.46 -0.38 16 13 N -0.91 -56.25 13.63 21.45 0.29 -55.96 16 14 Si 1.13 48.60 29.91 68.60 2.05 50.65 16 15 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 16 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 17 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 18 C -0.02 -1.08 6.31 71.98 0.45 -0.62 16 19 Cl -0.20 -8.35 26.18 -2.72 -0.07 -8.43 16 20 C -0.29 -11.44 6.11 -20.05 -0.12 -11.57 16 21 C -0.05 -1.80 10.15 71.24 0.72 -1.07 16 22 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.10 1.43 7.14 -2.38 -0.02 1.41 16 25 H 0.26 16.84 6.80 -92.71 -0.63 16.21 16 26 H 0.11 4.38 8.14 -2.39 -0.02 4.36 16 27 H 0.09 3.86 8.14 -2.38 -0.02 3.84 16 28 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.09 2.17 7.14 -2.39 -0.02 2.15 16 30 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -73.20 273.60 2.15 -71.05 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -0.61 Total: 17.25 kcal Atomic # 6 Polarization: -25.34 SS G_CDS: 3.41 Total: -21.93 kcal Atomic # 7 Polarization: -88.71 SS G_CDS: -1.71 Total: -90.42 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.92 Total: -18.18 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 2.05 Total: 50.65 kcal Atomic # 17 Polarization: -8.35 SS G_CDS: -0.07 Total: -8.43 kcal Total: -73.20 2.15 -71.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226510708.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.005 kcal (2) G-P(sol) polarization free energy of solvation -73.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds