Wall clock time and date at job start Thu Apr 9 2020 12:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38370 * 119.84536 * 2 1 4 4 C 1.37944 * 120.15138 * 179.97438 * 3 2 1 5 5 C 1.39644 * 119.84523 * 0.25123 * 4 3 2 6 6 C 1.47725 * 120.15128 * 179.72363 * 5 4 3 7 7 O 1.21594 * 119.99513 * 42.78456 * 6 5 4 8 8 N 1.34771 * 120.00364 * 222.78691 * 6 5 4 9 9 C 1.36867 * 120.00303 * 182.49171 * 8 6 5 10 10 H 1.08006 * 120.00095 * 348.89745 * 9 8 6 11 11 C 1.39051 * 120.00568 * 168.90373 * 9 8 6 12 12 N 1.31363 * 119.99408 * 3.32624 * 11 9 8 13 13 Si 1.86792 * 120.00446 * 183.32842 * 11 9 8 14 14 H 1.48498 * 109.47552 * 89.99713 * 13 11 9 15 15 H 1.48501 * 109.47039 * 209.99650 * 13 11 9 16 16 H 1.48501 * 109.46908 * 329.99436 * 13 11 9 17 17 C 1.46505 * 119.99788 * 2.48645 * 8 6 5 18 18 C 1.47199 * 109.47353 * 263.37818 * 17 8 6 19 19 N 5.68125 * 133.44037 * 188.15164 * 2 1 3 20 20 C 1.39651 * 119.69681 * 359.50132 * 5 4 3 21 21 C 1.37934 * 119.84564 * 0.47484 * 20 5 4 22 22 H 1.09000 * 109.47385 * 90.00383 * 1 2 3 23 23 H 1.09004 * 109.47260 * 209.99928 * 1 2 3 24 24 H 1.08993 * 109.47535 * 330.00213 * 1 2 3 25 25 H 1.08000 * 119.92893 * 359.97438 * 3 2 1 26 26 H 1.08000 * 120.07378 * 179.97438 * 4 3 2 27 27 H 0.97000 * 119.99896 * 180.02562 * 12 11 9 28 28 H 1.08997 * 109.47280 * 23.38036 * 17 8 6 29 29 H 1.09000 * 109.46698 * 143.37958 * 17 8 6 30 30 H 1.08001 * 120.07209 * 180.25481 * 20 5 4 31 31 H 1.08000 * 119.92102 * 179.77204 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2002 0.0000 4 6 3.5750 1.2076 0.0005 5 6 4.2764 0.0001 -0.0042 6 6 5.7537 0.0001 -0.0099 7 8 6.3643 0.7717 0.7045 8 7 6.4246 -0.8551 -0.8067 9 6 7.7924 -0.8905 -0.7745 10 1 8.3405 -0.1204 -0.2519 11 6 8.4767 -1.9179 -1.4147 12 7 7.8140 -2.8178 -2.1052 13 14 10.3379 -2.0185 -1.2929 14 1 10.7132 -2.8386 -0.1132 15 1 10.8814 -2.6452 -2.5246 16 1 10.8988 -0.6515 -1.1441 17 6 5.6897 -1.7468 -1.7073 18 6 5.5339 -3.0657 -1.0725 19 7 5.4134 -4.0834 -0.5849 20 6 3.5750 -1.2075 0.0010 21 6 2.1957 -1.2002 0.0010 22 1 -0.3634 -0.0001 -1.0276 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5138 25 1 1.6519 2.1334 -0.0004 26 1 4.1112 2.1450 0.0001 27 1 8.2912 -3.5347 -2.5515 28 1 4.7063 -1.3246 -1.9140 29 1 6.2418 -1.8558 -2.6408 30 1 4.1114 -2.1449 0.0016 31 1 1.6520 -2.1333 0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000123310.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:18:24 Heat of formation + Delta-G solvation = 37.562526 kcal Electronic energy + Delta-G solvation = -17052.987330 eV Core-core repulsion = 14300.414679 eV Total energy + Delta-G solvation = -2752.572651 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.74088 -37.92415 -35.95457 -34.38387 -32.71273 -31.67082 -30.60221 -27.69517 -27.13099 -24.76144 -22.33435 -21.75854 -19.60714 -18.04301 -16.87551 -16.30159 -15.64318 -15.05862 -14.74907 -14.24350 -13.95576 -13.66513 -13.45608 -13.24292 -12.77367 -12.70974 -12.13987 -12.06156 -11.69522 -11.58270 -11.34700 -11.20241 -11.12787 -10.69018 -10.46240 -10.43547 -10.37029 -9.36332 -8.78840 -8.65046 -8.25585 -8.21663 -6.48143 -4.08677 1.37530 1.68823 3.07893 3.18212 3.22259 3.52091 3.68568 3.94645 4.06784 4.19280 4.74220 4.87977 5.00775 5.05940 5.27802 5.28217 5.48166 5.59059 5.60935 5.73207 5.85531 5.94340 6.11525 6.26872 6.32172 6.63091 6.79031 6.82283 6.86194 7.22845 7.37840 7.79860 8.22972 8.72273 8.91637 9.10929 9.65146 10.46015 Molecular weight = 244.10amu Principal moments of inertia in cm(-1) A = 0.036035 B = 0.007134 C = 0.006208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.829495 B = 3923.927216 C = 4509.509289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.086 4.086 3 C -0.128 4.128 4 C -0.074 4.074 5 C -0.103 4.103 6 C 0.487 3.513 7 O -0.573 6.573 8 N -0.435 5.435 9 C -0.297 4.297 10 H 0.113 0.887 11 C 0.027 3.973 12 N -0.892 5.892 13 Si 0.940 3.060 14 H -0.277 1.277 15 H -0.281 1.281 16 H -0.267 1.267 17 C 0.207 3.793 18 C 0.259 3.741 19 N -0.486 5.486 20 C -0.101 4.101 21 C -0.125 4.125 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.122 0.878 26 H 0.128 0.872 27 H 0.275 0.725 28 H 0.080 0.920 29 H 0.155 0.845 30 H 0.129 0.871 31 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.711 4.277 -1.886 11.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.086 4.086 3 C -0.146 4.146 4 C -0.093 4.093 5 C -0.107 4.107 6 C 0.276 3.724 7 O -0.457 6.457 8 N -0.154 5.154 9 C -0.424 4.424 10 H 0.131 0.869 11 C -0.174 4.174 12 N -0.534 5.534 13 Si 0.767 3.233 14 H -0.203 1.203 15 H -0.206 1.206 16 H -0.191 1.191 17 C 0.080 3.920 18 C -0.058 4.058 19 N -0.167 5.167 20 C -0.120 4.120 21 C -0.143 4.143 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.140 0.860 26 H 0.146 0.854 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.172 0.828 30 H 0.146 0.854 31 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.461 2.995 -0.948 10.922 hybrid contribution 1.018 -0.006 -0.218 1.041 sum -9.443 2.989 -1.166 9.973 Atomic orbital electron populations 1.20777 0.91472 1.02491 1.02120 1.19968 0.95804 0.93230 0.99620 1.20908 0.93887 0.97325 1.02500 1.21176 0.93605 0.97502 0.96990 1.20213 0.94533 0.93787 1.02153 1.17996 0.86014 0.84999 0.83383 1.90638 1.69087 1.42490 1.43519 1.43573 1.06463 1.31538 1.33781 1.19924 0.79930 1.10121 1.32384 0.86915 1.25363 1.01549 0.94722 0.95752 1.69687 1.35952 1.15099 1.32628 0.85675 0.80930 0.78861 0.77861 1.20291 1.20640 1.19147 1.19466 0.96813 0.79790 0.95930 1.29173 0.89413 0.94883 0.92347 1.80891 1.13188 1.12598 1.10060 1.21727 0.94399 0.98018 0.97832 1.20910 0.93847 0.97451 1.02083 0.91286 0.91736 0.91734 0.86040 0.85391 0.91411 0.90266 0.82830 0.85390 0.86123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.00 36.01 0.36 -0.71 16 2 C -0.09 -1.14 5.89 -104.52 -0.62 -1.75 16 3 C -0.13 -1.76 9.68 -39.64 -0.38 -2.14 16 4 C -0.07 -1.24 9.67 -39.16 -0.38 -1.62 16 5 C -0.10 -2.03 4.96 -104.97 -0.52 -2.55 16 6 C 0.49 11.62 7.24 -12.39 -0.09 11.53 16 7 O -0.57 -15.50 16.56 5.28 0.09 -15.41 16 8 N -0.44 -10.50 2.60 -119.05 -0.31 -10.81 16 9 C -0.30 -7.70 9.48 -15.00 -0.14 -7.84 16 10 H 0.11 3.06 7.20 -52.48 -0.38 2.68 16 11 C 0.03 0.67 5.38 -17.45 -0.09 0.58 16 12 N -0.89 -21.88 8.07 55.50 0.45 -21.43 16 13 Si 0.94 20.04 29.55 -169.99 -5.02 15.02 16 14 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 15 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 16 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 17 C 0.21 4.36 4.76 -6.83 -0.03 4.33 16 18 C 0.26 5.85 10.50 -20.80 -0.22 5.63 16 19 N -0.49 -11.62 18.47 42.11 0.78 -10.84 16 20 C -0.10 -1.82 7.59 -39.17 -0.30 -2.11 16 21 C -0.12 -1.86 9.68 -39.64 -0.38 -2.24 16 22 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 24 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 25 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 26 H 0.13 2.08 8.06 -52.49 -0.42 1.66 16 27 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 28 H 0.08 1.43 5.67 -51.93 -0.29 1.13 16 29 H 0.15 3.34 5.99 -51.93 -0.31 3.03 16 30 H 0.13 2.52 4.23 -52.49 -0.22 2.30 16 31 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 271.27 15.07 4.09 4.09 Total: -1.00 -29.56 271.27 -5.60 -35.16 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -2.87 Total: 3.13 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -2.80 Total: 1.10 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: 0.92 Total: -43.09 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: 0.09 Total: -15.41 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.56 -5.60 -35.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000123310.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.724 kcal (2) G-P(sol) polarization free energy of solvation -29.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds