Wall clock time and date at job start Thu Apr 9 2020 12:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.37959 * 120.08056 * 2 1 4 4 C 1.38349 * 120.15541 * 179.97438 * 3 2 1 5 5 C 1.38402 * 120.30477 * 359.97438 * 4 3 2 6 6 C 1.37919 * 120.14858 * 359.72856 * 5 4 3 7 7 C 1.39634 * 120.07539 * 179.97438 * 2 1 3 8 8 C 1.47719 * 120.15140 * 0.02562 * 7 2 1 9 9 O 1.21590 * 120.00133 * 300.37425 * 8 7 2 10 10 N 1.34779 * 120.00087 * 120.37552 * 8 7 2 11 11 C 1.36867 * 119.99835 * 184.98166 * 10 8 7 12 12 H 1.08003 * 120.00391 * 346.97836 * 11 10 8 13 13 C 1.39057 * 119.99900 * 167.25395 * 11 10 8 14 14 N 1.31363 * 119.99538 * 333.94035 * 13 11 10 15 15 Si 1.86799 * 120.00146 * 153.94194 * 13 11 10 16 16 H 1.48505 * 109.46881 * 94.98404 * 15 13 11 17 17 H 1.48495 * 109.47036 * 214.98548 * 15 13 11 18 18 H 1.48493 * 109.46894 * 334.98548 * 15 13 11 19 19 C 1.46500 * 120.00064 * 4.97765 * 10 8 7 20 20 C 1.47196 * 109.47104 * 277.04779 * 19 10 8 21 21 N 4.13091 * 91.78378 * 248.53007 * 2 1 3 22 22 H 1.09004 * 109.47334 * 270.82343 * 1 2 3 23 23 H 1.08996 * 109.47457 * 30.82009 * 1 2 3 24 24 H 1.09001 * 109.47217 * 150.82264 * 1 2 3 25 25 H 1.07995 * 119.92047 * 359.97438 * 3 2 1 26 26 H 1.08001 * 119.85230 * 179.97438 * 4 3 2 27 27 H 1.08005 * 119.92517 * 179.97438 * 5 4 3 28 28 H 1.08001 * 120.07148 * 180.29395 * 6 5 4 29 29 H 0.96999 * 119.99365 * 179.97438 * 14 13 11 30 30 H 1.09007 * 109.46805 * 37.04505 * 19 10 8 31 31 H 1.08990 * 109.47307 * 157.04218 * 19 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1938 0.0000 4 6 3.5819 1.1956 0.0005 5 6 4.2818 0.0016 0.0016 6 6 3.6033 -1.1991 0.0078 7 6 2.2067 -1.2083 0.0005 8 6 1.4732 -2.4905 0.0005 9 8 0.7087 -2.7537 0.9088 10 7 1.6512 -3.3688 -1.0062 11 6 0.8974 -4.5099 -1.0601 12 1 0.3165 -4.8145 -0.2021 13 6 0.8839 -5.2802 -2.2178 14 7 1.1339 -4.7225 -3.3806 15 14 0.5104 -7.1078 -2.1193 16 1 -0.9348 -7.3322 -2.3771 17 1 1.3131 -7.8326 -3.1369 18 1 0.8559 -7.6114 -0.7658 19 6 2.6515 -3.1020 -2.0427 20 6 2.0781 -2.2041 -3.0584 21 7 1.6355 -1.5112 -3.8424 22 1 -0.3634 0.0148 1.0276 23 1 -0.3634 0.8825 -0.5265 24 1 -0.3634 -0.8973 -0.5010 25 1 1.6584 2.1291 -0.0004 26 1 4.1183 2.1330 0.0001 27 1 5.3618 0.0102 0.0016 28 1 4.1507 -2.1301 0.0134 29 1 1.1249 -5.2599 -4.1881 30 1 3.5247 -2.6301 -1.5920 31 1 2.9473 -4.0400 -2.5123 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000304751.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:18:26 Heat of formation + Delta-G solvation = 31.133876 kcal Electronic energy + Delta-G solvation = -17361.109051 eV Core-core repulsion = 14608.257632 eV Total energy + Delta-G solvation = -2752.851418 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.095 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.73345 -37.74379 -35.77714 -34.38605 -32.38040 -32.05437 -30.57605 -27.47666 -26.73860 -25.08625 -22.78526 -21.33120 -19.38137 -17.98442 -16.92002 -16.25391 -15.66922 -15.10227 -14.90457 -14.32961 -13.96115 -13.37175 -13.09470 -12.92235 -12.90138 -12.72072 -12.01820 -11.88211 -11.74128 -11.54531 -11.39811 -11.21006 -11.01678 -10.75748 -10.58078 -10.41421 -10.31375 -9.31169 -8.76522 -8.48033 -8.27722 -8.10261 -6.60247 -3.99922 1.50186 1.67596 3.05530 3.19278 3.25635 3.50730 3.70017 3.98291 4.06506 4.13773 4.73856 4.82576 5.13534 5.17695 5.22094 5.27066 5.44834 5.62972 5.81751 5.96726 6.05062 6.10965 6.18975 6.26389 6.49352 6.59812 6.68252 6.72369 6.94960 7.25316 7.40236 7.83712 8.22800 8.71564 8.92948 9.13273 9.68939 10.45446 Molecular weight = 244.10amu Principal moments of inertia in cm(-1) A = 0.030400 B = 0.008092 C = 0.007591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.844865 B = 3459.405179 C = 3687.556332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.047 4.047 3 C -0.125 4.125 4 C -0.117 4.117 5 C -0.130 4.130 6 C -0.103 4.103 7 C -0.096 4.096 8 C 0.489 3.511 9 O -0.567 6.567 10 N -0.430 5.430 11 C -0.317 4.317 12 H 0.113 0.887 13 C 0.034 3.966 14 N -0.866 5.866 15 Si 0.924 3.076 16 H -0.278 1.278 17 H -0.280 1.280 18 H -0.266 1.266 19 C 0.210 3.790 20 C 0.245 3.755 21 N -0.469 5.469 22 H 0.074 0.926 23 H 0.059 0.941 24 H 0.072 0.928 25 H 0.120 0.880 26 H 0.118 0.882 27 H 0.122 0.878 28 H 0.129 0.871 29 H 0.275 0.725 30 H 0.090 0.910 31 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.961 5.727 3.606 9.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.048 4.048 3 C -0.143 4.143 4 C -0.135 4.135 5 C -0.149 4.149 6 C -0.122 4.122 7 C -0.100 4.100 8 C 0.278 3.722 9 O -0.451 6.451 10 N -0.148 5.148 11 C -0.444 4.444 12 H 0.131 0.869 13 C -0.171 4.171 14 N -0.503 5.503 15 Si 0.749 3.251 16 H -0.204 1.204 17 H -0.206 1.206 18 H -0.190 1.190 19 C 0.082 3.918 20 C -0.074 4.074 21 N -0.149 5.149 22 H 0.092 0.908 23 H 0.078 0.922 24 H 0.091 0.909 25 H 0.138 0.862 26 H 0.136 0.864 27 H 0.140 0.860 28 H 0.147 0.853 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.917 6.512 2.690 9.201 hybrid contribution -0.013 -1.142 -0.043 1.143 sum 5.904 5.370 2.647 8.408 Atomic orbital electron populations 1.20775 0.90938 1.02678 1.02531 1.19896 0.96311 0.91747 0.96802 1.20909 0.94280 0.97117 1.02011 1.21119 0.94133 0.97875 1.00387 1.20986 0.99591 0.92339 1.01934 1.21310 0.93064 0.98393 0.99442 1.20176 0.93818 0.94414 1.01554 1.17929 0.85332 0.83225 0.85685 1.90642 1.40303 1.77064 1.37063 1.43631 1.32614 1.18777 1.19820 1.19755 1.26858 0.97034 1.00724 0.86928 1.25294 0.96988 1.00876 0.93943 1.69994 1.46351 1.36097 0.97907 0.85961 0.78533 0.82049 0.78539 1.20383 1.20559 1.19018 1.19119 0.89784 0.97793 0.85075 1.29320 0.93042 0.91407 0.93610 1.80885 1.08534 1.14161 1.11324 0.90751 0.92179 0.90923 0.86173 0.86374 0.86032 0.85334 0.91477 0.89291 0.85003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.05 9.28 36.00 0.33 -1.71 16 2 C -0.05 -0.86 5.92 -104.21 -0.62 -1.47 16 3 C -0.13 -1.90 9.69 -39.64 -0.38 -2.28 16 4 C -0.12 -1.58 10.04 -39.48 -0.40 -1.98 16 5 C -0.13 -1.78 10.03 -39.64 -0.40 -2.18 16 6 C -0.10 -1.68 7.83 -39.17 -0.31 -1.98 16 7 C -0.10 -1.90 4.68 -104.97 -0.49 -2.39 16 8 C 0.49 11.51 5.77 -12.39 -0.07 11.43 16 9 O -0.57 -15.11 16.05 5.29 0.08 -15.02 16 10 N -0.43 -10.19 2.60 -119.06 -0.31 -10.50 16 11 C -0.32 -8.13 9.38 -15.00 -0.14 -8.27 16 12 H 0.11 3.04 7.34 -52.48 -0.39 2.66 16 13 C 0.03 0.82 4.79 -17.45 -0.08 0.74 16 14 N -0.87 -21.51 9.70 55.50 0.54 -20.97 16 15 Si 0.92 19.15 29.62 -169.99 -5.04 14.12 16 16 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 17 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 18 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 19 C 0.21 4.31 4.88 -6.83 -0.03 4.28 16 20 C 0.24 5.57 13.61 -20.76 -0.28 5.29 16 21 N -0.47 -11.37 18.54 42.16 0.78 -10.59 16 22 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 23 H 0.06 0.93 8.09 -51.93 -0.42 0.51 16 24 H 0.07 1.56 6.94 -51.93 -0.36 1.20 16 25 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 26 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 27 H 0.12 1.28 8.06 -52.48 -0.42 0.85 16 28 H 0.13 1.84 7.03 -52.49 -0.37 1.47 16 29 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 30 H 0.09 1.50 4.60 -51.93 -0.24 1.26 16 31 H 0.13 2.74 6.15 -51.93 -0.32 2.42 16 LS Contribution 274.50 15.07 4.14 4.14 Total: -1.00 -30.30 274.50 -5.59 -35.90 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -2.92 Total: 3.46 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -2.87 Total: -0.53 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 1.01 Total: -42.05 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: 0.08 Total: -15.02 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.04 Total: 14.12 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.30 -5.59 -35.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000304751.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.031 kcal (2) G-P(sol) polarization free energy of solvation -30.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds