Wall clock time and date at job start Thu Apr 9 2020 12:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.38333 * 119.87553 * 269.72452 * 3 2 1 5 5 C 1.37999 * 120.12853 * 179.76243 * 4 3 2 6 6 C 1.39400 * 119.86769 * 0.53578 * 5 4 3 7 7 C 1.48328 * 120.12279 * 179.69984 * 6 5 4 8 8 N 1.33939 * 126.33423 * 179.70710 * 7 6 5 9 9 N 1.28574 * 109.80172 * 179.87591 * 8 7 6 10 10 N 1.28898 * 109.76645 * 0.39768 * 9 8 7 11 11 C 1.37403 * 126.40696 * 179.75762 * 10 9 8 12 12 H 1.07999 * 120.00104 * 179.97438 * 11 10 9 13 13 C 1.39100 * 119.99591 * 359.97438 * 11 10 9 14 14 N 1.31170 * 119.99907 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99687 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47428 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47051 * 120.00225 * 15 13 11 18 18 H 1.48501 * 109.46946 * 239.99833 * 15 13 11 19 19 N 1.32095 * 126.33956 * 0.02562 * 7 6 5 20 20 C 1.39388 * 119.74922 * 359.72227 * 6 5 4 21 21 C 1.38006 * 119.87452 * 359.97438 * 20 6 5 22 22 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 25 25 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 26 26 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 27 27 H 1.08011 * 119.93443 * 0.02562 * 4 3 2 28 28 H 1.08000 * 120.06720 * 180.25562 * 5 4 3 29 29 H 0.96996 * 119.99560 * 180.02562 * 14 13 11 30 30 H 1.07996 * 120.06047 * 180.02562 * 20 6 5 31 31 H 1.08001 * 119.93558 * 180.02562 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2675 2.0686 -1.1995 5 6 2.7228 3.3713 -1.2056 6 6 2.9565 4.0307 0.0001 7 6 3.4523 5.4287 0.0002 8 7 3.7122 6.1785 1.0791 9 7 4.1285 7.3387 0.7133 10 7 4.1529 7.4072 -0.5736 11 6 4.5369 8.4913 -1.3254 12 1 4.5175 8.4348 -2.4038 13 6 4.9506 9.6615 -0.6975 14 7 4.9746 9.7299 0.6122 15 14 5.4733 11.1352 -1.7196 16 1 5.3578 10.8031 -3.1623 17 1 4.5962 12.2916 -1.4055 18 1 6.8821 11.4822 -1.4033 19 7 3.7136 6.1665 -1.0639 20 6 2.7229 3.3712 1.2057 21 6 2.2615 2.0706 1.1996 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 2.0902 1.5552 -2.1331 28 1 2.9021 3.8774 -2.1427 29 1 5.2628 10.5461 1.0499 30 1 2.9018 3.8774 2.1428 31 1 2.0798 1.5588 2.1331 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000414729.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:18:27 Heat of formation + Delta-G solvation = 126.529143 kcal Electronic energy + Delta-G solvation = -16218.363887 eV Core-core repulsion = 13501.941868 eV Total energy + Delta-G solvation = -2716.422018 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.09326 -38.92829 -34.74373 -33.94922 -31.51481 -31.08452 -30.50025 -28.72943 -26.25987 -24.04005 -22.70518 -21.49416 -21.43378 -19.90949 -18.17784 -16.10001 -15.68450 -15.07648 -15.04438 -14.79718 -14.33401 -13.64401 -13.50199 -13.04608 -12.96944 -12.28786 -12.20981 -12.11799 -11.85551 -11.48861 -11.37184 -11.15302 -10.76939 -10.67112 -10.58284 -10.27841 -9.75376 -9.21250 -9.00507 -8.85660 -8.57411 -7.86795 -7.04715 -4.90114 1.44976 1.79128 2.72066 2.86598 2.97526 3.17883 3.50562 3.75173 4.24960 4.52045 4.62179 4.87551 4.97470 5.21490 5.32450 5.34123 5.40326 5.59063 5.72644 5.81070 5.89615 6.05490 6.15284 6.21459 6.31250 6.48077 6.61784 6.71783 6.89465 7.00080 7.28958 7.39969 7.57315 7.78593 8.13941 8.90601 9.90914 10.34693 Molecular weight = 244.10amu Principal moments of inertia in cm(-1) A = 0.068912 B = 0.004403 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.218683 B = 6357.492598 C = 6661.402191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 C -0.093 4.093 4 C -0.122 4.122 5 C -0.093 4.093 6 C 0.027 3.973 7 C 0.162 3.838 8 N -0.383 5.383 9 N -0.074 5.074 10 N 0.007 4.993 11 C -0.274 4.274 12 H 0.134 0.866 13 C 0.042 3.958 14 N -0.749 5.749 15 Si 0.958 3.042 16 H -0.256 1.256 17 H -0.268 1.268 18 H -0.268 1.268 19 N -0.402 5.402 20 C -0.089 4.089 21 C -0.121 4.121 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.119 0.881 28 H 0.129 0.871 29 H 0.289 0.711 30 H 0.132 0.868 31 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.170 -10.349 -2.610 11.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.094 4.094 4 C -0.140 4.140 5 C -0.114 4.114 6 C 0.023 3.977 7 C -0.117 4.117 8 N -0.249 5.249 9 N -0.057 5.057 10 N 0.114 4.886 11 C -0.420 4.420 12 H 0.152 0.848 13 C -0.181 4.181 14 N -0.377 5.377 15 Si 0.780 3.220 16 H -0.179 1.179 17 H -0.192 1.192 18 H -0.193 1.193 19 N -0.252 5.252 20 C -0.110 4.110 21 C -0.140 4.140 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.137 0.863 28 H 0.147 0.853 29 H 0.100 0.900 30 H 0.150 0.850 31 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.980 -9.801 -2.007 10.766 hybrid contribution 0.146 0.409 -0.589 0.732 sum -3.834 -9.392 -2.596 10.471 Atomic orbital electron populations 1.21754 0.95034 1.01244 1.02357 1.20495 0.95945 0.92967 1.02443 1.19866 1.00153 0.96071 0.93311 1.20840 1.01228 0.94630 0.97288 1.21211 0.98130 0.94230 0.97784 1.17465 0.98466 0.88160 0.93600 1.22926 1.04600 0.95628 0.88534 1.75168 1.22987 0.99699 1.27035 1.78882 1.20037 1.11945 0.94840 1.48994 1.28686 1.07757 1.03175 1.20379 1.42246 0.86873 0.92489 0.84803 1.25994 0.95437 1.00107 0.96523 1.70129 1.30654 1.28411 1.08493 0.85377 0.78859 0.78121 0.79649 1.17913 1.19249 1.19257 1.78680 1.31336 0.93470 1.21738 1.21217 0.97659 0.94107 0.97976 1.20858 1.01133 0.94671 0.97294 0.92524 0.92772 0.92557 0.91303 0.91331 0.86262 0.85342 0.90018 0.85025 0.86197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.89 37.16 0.37 -1.00 16 2 C -0.08 -0.83 6.06 -27.88 -0.17 -1.00 16 3 C -0.09 -1.28 5.14 -104.55 -0.54 -1.81 16 4 C -0.12 -1.80 9.68 -39.63 -0.38 -2.18 16 5 C -0.09 -1.70 9.70 -39.24 -0.38 -2.08 16 6 C 0.03 0.56 5.88 -104.88 -0.62 -0.06 16 7 C 0.16 4.22 7.93 -156.19 -1.24 2.98 16 8 N -0.38 -10.87 12.02 32.16 0.39 -10.49 16 9 N -0.07 -2.22 11.11 60.35 0.67 -1.55 16 10 N 0.01 0.21 4.39 31.64 0.14 0.35 16 11 C -0.27 -7.17 10.63 -14.73 -0.16 -7.33 16 12 H 0.13 3.17 7.83 -52.49 -0.41 2.76 16 13 C 0.04 1.01 5.50 -17.51 -0.10 0.91 16 14 N -0.75 -19.48 11.90 55.50 0.66 -18.82 16 15 Si 0.96 17.40 29.55 -169.99 -5.02 12.38 16 16 H -0.26 -4.43 7.11 56.52 0.40 -4.03 16 17 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 18 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 19 N -0.40 -11.03 12.39 32.17 0.40 -10.63 16 20 C -0.09 -1.64 9.70 -39.24 -0.38 -2.02 16 21 C -0.12 -1.80 9.68 -39.63 -0.38 -2.18 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 26 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 27 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 28 H 0.13 2.36 7.87 -52.49 -0.41 1.94 16 29 H 0.29 6.64 8.30 -40.82 -0.34 6.30 16 30 H 0.13 2.46 7.87 -52.49 -0.41 2.05 16 31 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 281.05 15.07 4.24 4.24 Total: -1.00 -31.47 281.05 -5.83 -37.30 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -3.32 Total: 3.00 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -3.98 Total: -15.77 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: 2.26 Total: -41.14 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -5.02 Total: 12.38 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.47 -5.83 -37.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000414729.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.828 kcal (2) G-P(sol) polarization free energy of solvation -31.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds