Wall clock time and date at job start Thu Apr 9 2020 12:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00120 * 2 1 4 4 H 1.48496 * 109.47119 * 239.99971 * 3 2 1 5 5 H 1.48506 * 109.47018 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47064 * 119.99987 * 3 2 1 7 7 C 1.37884 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00000 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99854 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46840 * 180.02562 * 9 7 2 11 11 C 1.34781 * 120.00033 * 180.02562 * 10 9 7 12 12 O 1.21579 * 119.99737 * 359.97438 * 11 10 9 13 13 C 1.47649 * 120.00247 * 179.97438 * 11 10 9 14 14 C 1.40212 * 119.97371 * 359.97438 * 13 11 10 15 15 C 1.36312 * 120.66981 * 180.02562 * 14 13 11 16 16 C 1.39371 * 120.23981 * 359.95767 * 15 14 13 17 17 N 1.37396 * 133.24885 * 179.97438 * 16 15 14 18 18 H 0.97001 * 125.00716 * 0.02562 * 17 16 15 19 19 C 1.36862 * 109.97911 * 180.29734 * 17 16 15 20 20 C 1.34197 * 109.95877 * 359.54921 * 19 17 16 21 21 C 1.40879 * 119.63605 * 0.02562 * 16 15 14 22 22 C 1.39148 * 119.97716 * 179.97438 * 13 11 10 23 23 H 0.97001 * 120.00701 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47277 * 59.99986 * 9 7 2 25 25 H 1.09005 * 109.46943 * 299.99640 * 9 7 2 26 26 H 0.97001 * 120.00508 * 359.97438 * 10 9 7 27 27 H 1.08006 * 119.66023 * 359.97403 * 14 13 11 28 28 H 1.08006 * 119.88097 * 179.97438 * 15 14 13 29 29 H 1.07995 * 125.01850 * 179.73151 * 19 17 16 30 30 H 1.07998 * 126.53635 * 180.14920 * 20 19 17 31 31 H 1.08001 * 120.30079 * 0.04584 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 1.7538 -4.8834 0.0015 12 8 0.5584 -5.1055 0.0006 13 6 2.7132 -6.0057 0.0021 14 6 4.0916 -5.7489 0.0026 15 6 4.9899 -6.7741 0.0026 16 6 4.5468 -8.0955 0.0032 17 7 5.1964 -9.3062 0.0030 18 1 6.1596 -9.4210 0.0027 19 6 4.2840 -10.3264 -0.0028 20 6 3.0385 -9.8271 0.0034 21 6 3.1644 -8.3667 0.0032 22 6 2.2488 -7.3174 0.0024 23 1 -0.4851 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8904 26 1 3.1567 -3.4355 0.0021 27 1 4.4451 -4.7283 0.0019 28 1 6.0488 -6.5617 0.0025 29 1 4.5302 -11.3779 -0.0084 30 1 2.1188 -10.3932 0.0033 31 1 1.1879 -7.5199 0.0013 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082598521.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:18:39 Heat of formation + Delta-G solvation = 15.545782 kcal Electronic energy + Delta-G solvation = -16125.139465 eV Core-core repulsion = 13371.612096 eV Total energy + Delta-G solvation = -2753.527369 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.27867 -38.89086 -36.32468 -34.18459 -32.35208 -31.95871 -29.74307 -28.83288 -27.06830 -23.78878 -22.26840 -21.98946 -20.87096 -19.57610 -18.16544 -17.38860 -16.14056 -15.73792 -15.16992 -14.65203 -14.56775 -14.09806 -13.96820 -13.71187 -13.26070 -13.07555 -12.67215 -12.25106 -11.95991 -11.88504 -11.30300 -10.97264 -10.83582 -10.82839 -10.28691 -9.82888 -9.37360 -9.08248 -8.69650 -8.26879 -7.88520 -7.70580 -6.12906 -4.19797 1.11143 1.33307 2.63064 2.98797 3.27898 3.32467 3.34054 3.44269 4.12731 4.30724 4.40396 4.67798 4.74270 5.02242 5.23033 5.25310 5.35813 5.48085 5.56925 5.75263 5.89809 6.09974 6.40042 6.55209 6.64130 6.67584 7.07373 7.36236 7.37733 7.48889 7.57255 7.71391 8.01129 8.68006 8.82361 9.15518 9.46627 10.97361 Molecular weight = 244.10amu Principal moments of inertia in cm(-1) A = 0.052860 B = 0.004300 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.577460 B = 6510.193392 C = 7024.625681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.249 3.751 10 N -0.707 5.707 11 C 0.543 3.457 12 O -0.556 6.556 13 C -0.151 4.151 14 C -0.065 4.065 15 C -0.140 4.140 16 C 0.109 3.891 17 N -0.596 5.596 18 H 0.414 0.586 19 C 0.039 3.961 20 C -0.193 4.193 21 C -0.123 4.123 22 C -0.008 4.008 23 H 0.266 0.734 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.389 0.611 27 H 0.132 0.868 28 H 0.122 0.878 29 H 0.169 0.831 30 H 0.148 0.852 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.550 -18.065 -0.008 21.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.129 3.871 10 N -0.355 5.355 11 C 0.329 3.671 12 O -0.437 6.437 13 C -0.156 4.156 14 C -0.085 4.085 15 C -0.161 4.161 16 C 0.001 3.999 17 N -0.199 5.199 18 H 0.251 0.749 19 C -0.086 4.086 20 C -0.218 4.218 21 C -0.128 4.128 22 C -0.028 4.028 23 H 0.076 0.924 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.223 0.777 27 H 0.149 0.851 28 H 0.140 0.860 29 H 0.187 0.813 30 H 0.166 0.834 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 11.622 -18.091 -0.005 21.502 hybrid contribution 1.403 0.926 -0.003 1.681 sum 13.024 -17.164 -0.009 21.546 Atomic orbital electron populations 1.69963 1.06104 1.27392 1.48830 1.24947 0.94909 0.99407 0.94715 0.86474 0.79414 0.82338 0.78669 1.20070 1.21083 1.20073 1.21192 0.93226 0.90480 1.53313 0.91953 1.19129 0.88317 0.81818 0.97882 1.46396 1.11121 1.05990 1.72006 1.18160 0.87918 0.83229 0.77747 1.90721 1.16320 1.84990 1.51661 1.19960 0.93524 0.94026 1.08073 1.20759 0.91871 0.98913 0.96924 1.19625 0.99718 0.88792 1.07929 1.18413 0.91989 0.86959 1.02578 1.41740 1.08662 1.04139 1.65358 0.74940 1.21772 0.88779 0.93078 1.04992 1.21759 0.97118 0.91865 1.11045 1.19166 0.91980 0.93656 1.07971 1.20697 0.99618 0.89677 0.92796 0.92396 0.95367 0.95370 0.77689 0.85052 0.85960 0.81343 0.83443 0.84565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.54 -14.97 9.28 -34.44 -0.32 -15.29 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.25 6.78 5.43 -5.19 -0.03 6.76 16 10 N -0.71 -15.69 5.50 -62.49 -0.34 -16.03 16 11 C 0.54 11.86 7.76 -12.42 -0.10 11.76 16 12 O -0.56 -14.21 16.33 5.30 0.09 -14.13 16 13 C -0.15 -2.63 5.87 -104.98 -0.62 -3.25 16 14 C -0.06 -0.92 9.46 -39.53 -0.37 -1.29 16 15 C -0.14 -1.69 10.00 -39.85 -0.40 -2.09 16 16 C 0.11 1.34 7.27 -83.95 -0.61 0.73 16 17 N -0.60 -5.25 6.05 -10.61 -0.06 -5.31 16 18 H 0.41 2.25 8.96 -40.82 -0.37 1.88 16 19 C 0.04 0.32 11.81 -16.73 -0.20 0.13 16 20 C -0.19 -2.10 11.09 -37.65 -0.42 -2.52 16 21 C -0.12 -1.72 6.36 -105.16 -0.67 -2.39 16 22 C -0.01 -0.13 9.64 -38.86 -0.37 -0.51 16 23 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.39 7.37 6.32 -40.82 -0.26 7.11 16 27 H 0.13 1.65 6.36 -52.48 -0.33 1.32 16 28 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 29 H 0.17 0.73 8.06 -52.49 -0.42 0.31 16 30 H 0.15 1.33 8.06 -52.49 -0.42 0.90 16 31 H 0.14 2.24 7.64 -52.49 -0.40 1.84 16 LS Contribution 277.11 15.07 4.18 4.18 Total: -1.00 -34.29 277.11 -7.64 -41.93 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -3.01 Total: 5.31 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -4.20 Total: -6.27 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: 0.33 Total: -46.98 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: 0.09 Total: -14.13 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -34.29 -7.64 -41.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082598521.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.471 kcal (2) G-P(sol) polarization free energy of solvation -34.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds