Wall clock time and date at job start Thu Apr 9 2020 12:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00120 * 2 1 4 4 H 1.48496 * 109.47119 * 239.99971 * 3 2 1 5 5 H 1.48506 * 109.47018 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47064 * 119.99987 * 3 2 1 7 7 C 1.37884 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00000 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99854 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46840 * 180.02562 * 9 7 2 11 11 C 1.34781 * 120.00033 * 180.02562 * 10 9 7 12 12 O 1.21579 * 119.99737 * 359.97438 * 11 10 9 13 13 C 1.47649 * 120.00247 * 179.97438 * 11 10 9 14 14 C 1.40212 * 119.97371 * 359.97438 * 13 11 10 15 15 C 1.36312 * 120.66981 * 180.02562 * 14 13 11 16 16 C 1.39371 * 120.23981 * 359.95767 * 15 14 13 17 17 N 1.37396 * 133.24885 * 179.97438 * 16 15 14 18 18 H 0.97001 * 125.00716 * 0.02562 * 17 16 15 19 19 C 1.36862 * 109.97911 * 180.29734 * 17 16 15 20 20 C 1.34197 * 109.95877 * 359.54921 * 19 17 16 21 21 C 1.40879 * 119.63605 * 0.02562 * 16 15 14 22 22 C 1.39148 * 119.97716 * 179.97438 * 13 11 10 23 23 H 0.97001 * 120.00701 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47277 * 59.99986 * 9 7 2 25 25 H 1.09005 * 109.46943 * 299.99640 * 9 7 2 26 26 H 0.97001 * 120.00508 * 359.97438 * 10 9 7 27 27 H 1.08006 * 119.66023 * 359.97403 * 14 13 11 28 28 H 1.08006 * 119.88097 * 179.97438 * 15 14 13 29 29 H 1.07995 * 125.01850 * 179.73151 * 19 17 16 30 30 H 1.07998 * 126.53635 * 180.14920 * 20 19 17 31 31 H 1.08001 * 120.30079 * 0.04584 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 1.7538 -4.8834 0.0015 12 8 0.5584 -5.1055 0.0006 13 6 2.7132 -6.0057 0.0021 14 6 4.0916 -5.7489 0.0026 15 6 4.9899 -6.7741 0.0026 16 6 4.5468 -8.0955 0.0032 17 7 5.1964 -9.3062 0.0030 18 1 6.1596 -9.4210 0.0027 19 6 4.2840 -10.3264 -0.0028 20 6 3.0385 -9.8271 0.0034 21 6 3.1644 -8.3667 0.0032 22 6 2.2488 -7.3174 0.0024 23 1 -0.4851 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8904 26 1 3.1567 -3.4355 0.0021 27 1 4.4451 -4.7283 0.0019 28 1 6.0488 -6.5617 0.0025 29 1 4.5302 -11.3779 -0.0084 30 1 2.1188 -10.3932 0.0033 31 1 1.1879 -7.5199 0.0013 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082598521.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:18:39 Heat of formation + Delta-G solvation = -9.253400 kcal Electronic energy + Delta-G solvation = -16126.214838 eV Core-core repulsion = 13371.612096 eV Total energy + Delta-G solvation = -2754.602742 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.095 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.20755 -40.56111 -37.51297 -36.20697 -34.38461 -32.95993 -31.03631 -29.80078 -28.96610 -25.44598 -23.71660 -23.30621 -21.74985 -21.20469 -19.30959 -18.85823 -17.72774 -17.26464 -16.71731 -16.34914 -16.16325 -15.35787 -15.07901 -14.93076 -14.74295 -14.09975 -14.01215 -13.97586 -13.61595 -13.38153 -12.93044 -12.69045 -12.49190 -12.22694 -11.88885 -11.51099 -10.91346 -10.79320 -10.79125 -9.91672 -9.22394 -8.71648 -8.28199 -6.45631 -0.04096 0.27880 1.43982 1.48970 1.57050 1.82063 1.98781 2.23478 2.32476 2.56655 2.97569 3.06794 3.72140 3.89770 3.97482 4.20782 4.31414 4.43586 4.71675 4.73065 4.96671 5.09501 5.09934 5.22524 5.35889 5.44471 5.47479 5.60423 5.72254 5.74179 5.83773 6.10226 6.63910 6.73124 6.87967 7.22600 7.43656 8.84194 Molecular weight = 244.10amu Principal moments of inertia in cm(-1) A = 0.052860 B = 0.004300 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.577460 B = 6510.193392 C = 7024.625681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.988 3.012 4 H -0.261 1.261 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.558 4.558 8 H 0.086 0.914 9 C 0.265 3.735 10 N -0.700 5.700 11 C 0.540 3.460 12 O -0.607 6.607 13 C -0.175 4.175 14 C -0.076 4.076 15 C -0.121 4.121 16 C 0.105 3.895 17 N -0.578 5.578 18 H 0.435 0.565 19 C 0.073 3.927 20 C -0.228 4.228 21 C -0.145 4.145 22 C -0.025 4.025 23 H 0.269 0.731 24 H -0.011 1.011 25 H -0.012 1.012 26 H 0.407 0.593 27 H 0.145 0.855 28 H 0.163 0.837 29 H 0.220 0.780 30 H 0.158 0.842 31 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.906 -19.416 -0.012 25.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.811 3.189 4 H -0.185 1.185 5 H -0.211 1.211 6 H -0.185 1.185 7 C -0.596 4.596 8 H 0.104 0.896 9 C 0.143 3.857 10 N -0.350 5.350 11 C 0.330 3.670 12 O -0.491 6.491 13 C -0.180 4.180 14 C -0.096 4.096 15 C -0.142 4.142 16 C -0.005 4.005 17 N -0.182 5.182 18 H 0.276 0.724 19 C -0.053 4.053 20 C -0.252 4.252 21 C -0.150 4.150 22 C -0.045 4.045 23 H 0.078 0.922 24 H 0.007 0.993 25 H 0.006 0.994 26 H 0.245 0.755 27 H 0.163 0.837 28 H 0.181 0.819 29 H 0.236 0.764 30 H 0.175 0.825 31 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 16.058 -19.482 -0.009 25.247 hybrid contribution 0.081 1.092 -0.002 1.095 sum 16.139 -18.390 -0.011 24.468 Atomic orbital electron populations 1.70139 1.08377 1.28716 1.49784 1.26111 0.95800 1.04012 0.93698 0.85157 0.77875 0.76289 0.79584 1.18513 1.21060 1.18525 1.21581 0.94374 0.90394 1.53256 0.89623 1.18603 0.88708 0.84206 0.94211 1.46093 1.11275 1.05201 1.72392 1.18949 0.88166 0.84009 0.75914 1.90673 1.18879 1.85731 1.53822 1.19595 0.94086 0.92336 1.11963 1.20844 0.90400 1.00490 0.97828 1.19954 1.01174 0.87962 1.05077 1.18564 0.91604 0.88345 1.01944 1.41831 1.09979 1.02901 1.63481 0.72410 1.22512 0.87406 0.94836 1.00517 1.22051 0.99216 0.90432 1.13527 1.19459 0.92650 0.94788 1.08091 1.20631 0.99349 0.90370 0.94105 0.92182 0.99349 0.99356 0.75549 0.83731 0.81916 0.76384 0.82477 0.86647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.49 13.29 21.45 0.28 -57.21 16 2 C 0.00 0.19 5.46 84.66 0.46 0.65 16 3 Si 0.99 42.87 29.54 68.60 2.03 44.89 16 4 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.56 -31.32 9.28 25.60 0.24 -31.08 16 8 H 0.09 4.29 7.60 -2.91 -0.02 4.27 16 9 C 0.27 15.40 5.43 85.63 0.46 15.86 16 10 N -0.70 -32.69 5.50 -469.89 -2.58 -35.28 16 11 C 0.54 25.29 7.76 86.73 0.67 25.96 16 12 O -0.61 -33.91 16.33 -3.97 -0.06 -33.97 16 13 C -0.18 -6.37 5.87 -20.09 -0.12 -6.49 16 14 C -0.08 -2.07 9.46 22.30 0.21 -1.86 16 15 C -0.12 -2.54 10.00 22.09 0.22 -2.32 16 16 C 0.11 2.27 7.27 39.19 0.28 2.56 16 17 N -0.58 -7.33 6.05 -187.48 -1.13 -8.47 16 18 H 0.44 2.16 8.96 -92.71 -0.83 1.33 16 19 C 0.07 0.86 11.81 82.99 0.98 1.84 16 20 C -0.23 -4.48 11.09 23.52 0.26 -4.22 16 21 C -0.14 -3.94 6.36 -20.21 -0.13 -4.07 16 22 C -0.02 -0.85 9.64 22.74 0.22 -0.63 16 23 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 24 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 25 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 26 H 0.41 15.68 6.32 -92.71 -0.59 15.09 16 27 H 0.15 3.43 6.36 -2.91 -0.02 3.41 16 28 H 0.16 2.08 8.06 -2.91 -0.02 2.05 16 29 H 0.22 0.41 8.06 -2.91 -0.02 0.39 16 30 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 31 H 0.12 4.25 7.64 -2.91 -0.02 4.23 16 Total: -1.00 -80.75 277.11 2.06 -78.70 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -0.24 Total: 15.12 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: 3.77 Total: -3.78 kcal Atomic # 7 Polarization: -97.52 SS G_CDS: -3.43 Total: -100.95 kcal Atomic # 8 Polarization: -33.91 SS G_CDS: -0.06 Total: -33.97 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -80.75 2.06 -78.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082598521.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.444 kcal (2) G-P(sol) polarization free energy of solvation -80.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds