Wall clock time and date at job start Thu Apr 9 2020 12:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.75852 * 125.23381 * 2 1 4 4 C 1.75811 * 91.16127 * 179.97438 * 3 2 1 5 5 C 1.33015 * 109.95001 * 359.76870 * 4 3 2 6 6 C 1.34658 * 125.23505 * 179.97438 * 2 1 3 7 7 C 1.48265 * 122.78205 * 359.97433 * 6 2 1 8 8 C 1.40094 * 120.83177 * 309.98581 * 7 6 2 9 9 C 1.38422 * 119.42716 * 180.02562 * 8 7 6 10 10 N 1.31523 * 121.15036 * 359.73184 * 9 8 7 11 11 C 1.33682 * 121.80739 * 0.53728 * 10 9 8 12 12 C 1.41435 * 119.78305 * 179.74585 * 11 10 9 13 13 H 1.08002 * 120.00491 * 179.72852 * 12 11 10 14 14 C 1.40028 * 119.99610 * 359.44623 * 12 11 10 15 15 N 1.30744 * 120.00260 * 0.27911 * 14 12 11 16 16 Si 1.86803 * 119.99845 * 180.27344 * 14 12 11 17 17 H 1.48504 * 109.47118 * 60.00518 * 16 14 12 18 18 H 1.48504 * 109.47036 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47374 * 300.00624 * 16 14 12 20 20 C 1.39413 * 120.82177 * 130.00509 * 7 6 2 21 21 H 1.08999 * 109.46704 * 270.02720 * 1 2 3 22 22 H 1.09009 * 109.47036 * 30.02109 * 1 2 3 23 23 H 1.08996 * 109.47769 * 150.02163 * 1 2 3 24 24 H 1.07994 * 125.02626 * 180.02562 * 4 3 2 25 25 H 1.07996 * 122.53612 * 180.23296 * 5 4 3 26 26 H 1.08005 * 120.28396 * 0.04121 * 8 7 6 27 27 H 1.07997 * 119.42404 * 180.02562 * 9 8 7 28 28 H 0.96991 * 119.99866 * 179.97438 * 15 14 12 29 29 H 1.07995 * 120.58885 * 359.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5215 1.4364 0.0000 4 6 3.9778 0.4514 0.0008 5 6 3.6532 -0.8385 0.0060 6 6 2.2839 -1.0999 0.0005 7 6 1.7289 -2.4747 0.0017 8 6 0.7436 -2.8505 0.9240 9 6 0.2462 -4.1421 0.8994 10 7 0.6787 -5.0211 0.0219 11 6 1.6208 -4.7155 -0.8760 12 6 2.0582 -5.6959 -1.7968 13 1 2.8159 -5.4516 -2.5265 14 6 1.5129 -6.9851 -1.7583 15 7 0.5957 -7.2810 -0.8749 16 14 2.0961 -8.2823 -2.9694 17 1 3.5539 -8.5040 -2.7936 18 1 1.3684 -9.5530 -2.7223 19 1 1.8293 -7.8211 -4.3555 20 6 2.1748 -3.4259 -0.9149 21 1 -0.3633 0.0005 1.0277 22 1 -0.3633 0.8899 -0.5142 23 1 -0.3634 -0.8901 -0.5135 24 1 4.9867 0.8367 0.0015 25 1 4.3945 -1.6240 0.0112 26 1 0.3752 -2.1386 1.6478 27 1 -0.5136 -4.4316 1.6102 28 1 0.2178 -8.1739 -0.8485 29 1 2.9330 -3.1752 -1.6420 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240501547.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:19:31 Heat of formation + Delta-G solvation = 55.678834 kcal Electronic energy + Delta-G solvation = -14545.107100 eV Core-core repulsion = 12138.354240 eV Total energy + Delta-G solvation = -2406.752860 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 245.057 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.74346 -37.04829 -33.58338 -31.88828 -30.47368 -29.85814 -26.23977 -25.57175 -22.85625 -21.71427 -20.93082 -18.61091 -16.87784 -16.69475 -15.62783 -14.85063 -14.40986 -14.08045 -13.70261 -13.50571 -13.06450 -12.56405 -12.36315 -12.07933 -11.83363 -11.77160 -11.27875 -11.17442 -11.15848 -10.76268 -10.57225 -10.36190 -9.92295 -9.38248 -8.60915 -8.25538 -7.66496 -7.58236 -7.56057 -6.40326 -4.53188 1.26169 1.90631 2.22295 2.62266 2.76921 3.07965 3.10199 3.17425 3.44976 3.94307 4.74666 5.18202 5.31490 5.53789 5.78560 5.84433 5.90790 5.99001 6.07842 6.32639 6.34774 6.48308 6.60014 6.76026 6.79173 6.94805 7.13366 7.33051 7.52922 7.71559 8.00034 8.21659 8.64931 8.91034 10.10946 10.31644 Molecular weight = 245.06amu Principal moments of inertia in cm(-1) A = 0.039966 B = 0.005691 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.425213 B = 4918.671465 C = 5364.060996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.169 4.169 3 S 0.060 5.940 4 C -0.224 4.224 5 C -0.108 4.108 6 C -0.048 4.048 7 C 0.021 3.979 8 C -0.299 4.299 9 C 0.123 3.877 10 N -0.483 5.483 11 C 0.256 3.744 12 C -0.433 4.433 13 H 0.082 0.918 14 C 0.070 3.930 15 N -0.716 5.716 16 Si 0.907 3.093 17 H -0.265 1.265 18 H -0.277 1.277 19 H -0.265 1.265 20 C -0.254 4.254 21 H 0.071 0.929 22 H 0.059 0.941 23 H 0.084 0.916 24 H 0.160 0.840 25 H 0.140 0.860 26 H 0.094 0.906 27 H 0.119 0.881 28 H 0.273 0.727 29 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.091 10.104 0.992 10.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.286 4.286 3 S 0.323 5.677 4 C -0.358 4.358 5 C -0.139 4.139 6 C -0.059 4.059 7 C 0.012 3.988 8 C -0.323 4.323 9 C -0.042 4.042 10 N -0.196 5.196 11 C 0.131 3.869 12 C -0.465 4.465 13 H 0.101 0.899 14 C -0.156 4.156 15 N -0.338 5.338 16 Si 0.731 3.269 17 H -0.189 1.189 18 H -0.202 1.202 19 H -0.189 1.189 20 C -0.277 4.277 21 H 0.090 0.910 22 H 0.078 0.922 23 H 0.102 0.898 24 H 0.177 0.823 25 H 0.158 0.842 26 H 0.113 0.887 27 H 0.136 0.864 28 H 0.084 0.916 29 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.372 10.649 1.035 10.786 hybrid contribution 1.042 -1.138 -0.455 1.608 sum 2.413 9.511 0.580 9.829 Atomic orbital electron populations 1.20322 0.87849 1.02871 1.02440 1.24510 0.99729 0.94184 1.10193 1.83861 0.97732 1.10513 1.75587 1.25243 1.01211 0.96573 1.12795 1.20240 0.95968 0.96194 1.01477 1.18021 0.92096 0.93698 1.02083 1.18203 0.95422 0.89367 0.95772 1.21288 1.06542 0.98697 1.05746 1.22439 0.96518 0.89476 0.95778 1.68742 1.13339 1.32622 1.04922 1.18522 0.88135 0.89743 0.90459 1.19580 1.19128 0.94235 1.13510 0.89937 1.26056 0.94182 0.99570 0.95759 1.70123 1.17034 1.19916 1.26704 0.86404 0.79846 0.79467 0.81194 1.18942 1.20212 1.18938 1.21803 1.06991 0.95236 1.03685 0.91037 0.92205 0.89754 0.82266 0.84218 0.88734 0.86368 0.91572 0.88273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 9.06 36.01 0.33 -0.81 15 2 C -0.17 -2.85 6.50 -35.58 -0.23 -3.08 15 3 S 0.06 0.84 23.31 -107.50 -2.51 -1.67 15 4 C -0.22 -3.20 11.19 28.92 0.32 -2.88 15 5 C -0.11 -1.84 9.86 -40.96 -0.40 -2.24 15 6 C -0.05 -0.91 5.40 -106.61 -0.58 -1.49 15 7 C 0.02 0.46 5.10 -104.64 -0.53 -0.07 15 8 C -0.30 -6.62 8.54 -38.82 -0.33 -6.95 15 9 C 0.12 2.96 11.16 -17.62 -0.20 2.76 15 10 N -0.48 -13.29 7.85 -11.22 -0.09 -13.38 15 11 C 0.26 6.99 6.55 -85.02 -0.56 6.43 15 12 C -0.43 -11.60 9.14 -37.69 -0.34 -11.94 15 13 H 0.08 2.06 7.85 -52.49 -0.41 1.65 15 14 C 0.07 1.77 5.50 -17.34 -0.10 1.68 15 15 N -0.72 -19.09 11.46 55.55 0.64 -18.46 15 16 Si 0.91 18.57 29.56 -169.99 -5.02 13.55 15 17 H -0.26 -5.34 7.11 56.52 0.40 -4.94 15 18 H -0.28 -5.53 7.11 56.52 0.40 -5.13 15 19 H -0.26 -5.35 7.11 56.52 0.40 -4.95 15 20 C -0.25 -6.24 9.47 -38.32 -0.36 -6.60 15 21 H 0.07 0.98 8.01 -51.93 -0.42 0.57 15 22 H 0.06 0.75 8.14 -51.92 -0.42 0.33 15 23 H 0.08 1.42 7.17 -51.93 -0.37 1.04 15 24 H 0.16 1.79 8.06 -52.49 -0.42 1.37 15 25 H 0.14 2.29 8.06 -52.49 -0.42 1.87 15 26 H 0.09 1.87 7.51 -52.48 -0.39 1.48 15 27 H 0.12 2.52 8.06 -52.49 -0.42 2.10 15 28 H 0.27 6.60 8.29 -40.82 -0.34 6.26 15 29 H 0.10 2.31 8.06 -52.49 -0.42 1.88 15 LS Contribution 270.17 15.07 4.07 4.07 Total: -1.00 -28.80 270.17 -8.74 -37.54 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -2.84 Total: 3.54 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: -2.98 Total: -25.19 kcal Atomic # 7 Polarization: -32.38 SS G_CDS: 0.55 Total: -31.84 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.02 Total: 13.55 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.51 Total: -1.67 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.80 -8.74 -37.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240501547.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.215 kcal (2) G-P(sol) polarization free energy of solvation -28.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds