Wall clock time and date at job start Thu Apr 9 2020 12:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.75852 * 125.23381 * 2 1 4 4 C 1.75811 * 91.16127 * 179.97438 * 3 2 1 5 5 C 1.33015 * 109.95001 * 359.76870 * 4 3 2 6 6 C 1.34658 * 125.23505 * 179.97438 * 2 1 3 7 7 C 1.48265 * 122.78205 * 359.97433 * 6 2 1 8 8 C 1.40094 * 120.83177 * 309.98581 * 7 6 2 9 9 C 1.38422 * 119.42716 * 180.02562 * 8 7 6 10 10 N 1.31523 * 121.15036 * 359.73184 * 9 8 7 11 11 C 1.33682 * 121.80739 * 0.53728 * 10 9 8 12 12 C 1.41435 * 119.78305 * 179.74585 * 11 10 9 13 13 H 1.08002 * 120.00491 * 179.72852 * 12 11 10 14 14 C 1.40028 * 119.99610 * 359.44623 * 12 11 10 15 15 N 1.30744 * 120.00260 * 0.27911 * 14 12 11 16 16 Si 1.86803 * 119.99845 * 180.27344 * 14 12 11 17 17 H 1.48504 * 109.47118 * 60.00518 * 16 14 12 18 18 H 1.48504 * 109.47036 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47374 * 300.00624 * 16 14 12 20 20 C 1.39413 * 120.82177 * 130.00509 * 7 6 2 21 21 H 1.08999 * 109.46704 * 270.02720 * 1 2 3 22 22 H 1.09009 * 109.47036 * 30.02109 * 1 2 3 23 23 H 1.08996 * 109.47769 * 150.02163 * 1 2 3 24 24 H 1.07994 * 125.02626 * 180.02562 * 4 3 2 25 25 H 1.07996 * 122.53612 * 180.23296 * 5 4 3 26 26 H 1.08005 * 120.28396 * 0.04121 * 8 7 6 27 27 H 1.07997 * 119.42404 * 180.02562 * 9 8 7 28 28 H 0.96991 * 119.99866 * 179.97438 * 15 14 12 29 29 H 1.07995 * 120.58885 * 359.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5215 1.4364 0.0000 4 6 3.9778 0.4514 0.0008 5 6 3.6532 -0.8385 0.0060 6 6 2.2839 -1.0999 0.0005 7 6 1.7289 -2.4747 0.0017 8 6 0.7436 -2.8505 0.9240 9 6 0.2462 -4.1421 0.8994 10 7 0.6787 -5.0211 0.0219 11 6 1.6208 -4.7155 -0.8760 12 6 2.0582 -5.6959 -1.7968 13 1 2.8159 -5.4516 -2.5265 14 6 1.5129 -6.9851 -1.7583 15 7 0.5957 -7.2810 -0.8749 16 14 2.0961 -8.2823 -2.9694 17 1 3.5539 -8.5040 -2.7936 18 1 1.3684 -9.5530 -2.7223 19 1 1.8293 -7.8211 -4.3555 20 6 2.1748 -3.4259 -0.9149 21 1 -0.3633 0.0005 1.0277 22 1 -0.3633 0.8899 -0.5142 23 1 -0.3634 -0.8901 -0.5135 24 1 4.9867 0.8367 0.0015 25 1 4.3945 -1.6240 0.0112 26 1 0.3752 -2.1386 1.6478 27 1 -0.5136 -4.4316 1.6102 28 1 0.2178 -8.1739 -0.8485 29 1 2.9330 -3.1752 -1.6420 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240501547.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:19:30 Heat of formation + Delta-G solvation = 40.494900 kcal Electronic energy + Delta-G solvation = -14545.765525 eV Core-core repulsion = 12138.354240 eV Total energy + Delta-G solvation = -2407.411285 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 245.057 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.41348 -38.59828 -35.45840 -33.25510 -32.20961 -31.67733 -27.80314 -27.28574 -24.27585 -23.46724 -22.63282 -20.20528 -18.53489 -17.94368 -17.38623 -16.42099 -16.18157 -15.87323 -15.24660 -14.84766 -14.41416 -14.21849 -13.91972 -13.65645 -13.30750 -13.11490 -12.85445 -12.81312 -12.71128 -12.41777 -12.15710 -11.79271 -11.65523 -11.20978 -10.27615 -9.58895 -9.50549 -9.43664 -9.02669 -8.29019 -6.52472 -0.01578 0.70680 0.89921 0.90822 1.08741 1.40030 1.52596 1.53492 1.94044 2.22985 2.85596 3.90424 3.96125 4.03794 4.23066 4.33214 4.50129 4.67311 4.74842 4.78053 4.84752 4.96693 5.05247 5.13950 5.21157 5.35422 5.49185 5.53087 5.68518 5.91175 6.14026 6.27835 6.72652 6.95584 8.18923 8.45639 Molecular weight = 245.06amu Principal moments of inertia in cm(-1) A = 0.039966 B = 0.005691 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.425213 B = 4918.671465 C = 5364.060996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.180 4.180 3 S 0.131 5.869 4 C -0.210 4.210 5 C -0.137 4.137 6 C -0.084 4.084 7 C 0.030 3.970 8 C -0.289 4.289 9 C 0.105 3.895 10 N -0.521 5.521 11 C 0.227 3.773 12 C -0.473 4.473 13 H 0.086 0.914 14 C 0.025 3.975 15 N -0.757 5.757 16 Si 0.987 3.013 17 H -0.259 1.259 18 H -0.267 1.267 19 H -0.259 1.259 20 C -0.276 4.276 21 H 0.086 0.914 22 H 0.085 0.915 23 H 0.058 0.942 24 H 0.194 0.806 25 H 0.134 0.866 26 H 0.121 0.879 27 H 0.140 0.860 28 H 0.279 0.721 29 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.657 12.179 0.958 12.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.297 4.297 3 S 0.395 5.605 4 C -0.345 4.345 5 C -0.167 4.167 6 C -0.096 4.096 7 C 0.022 3.978 8 C -0.312 4.312 9 C -0.059 4.059 10 N -0.234 5.234 11 C 0.102 3.898 12 C -0.504 4.504 13 H 0.104 0.896 14 C -0.197 4.197 15 N -0.379 5.379 16 Si 0.807 3.193 17 H -0.183 1.183 18 H -0.191 1.191 19 H -0.183 1.183 20 C -0.299 4.299 21 H 0.104 0.896 22 H 0.104 0.896 23 H 0.077 0.923 24 H 0.211 0.789 25 H 0.152 0.848 26 H 0.139 0.861 27 H 0.157 0.843 28 H 0.090 0.910 29 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.934 12.750 1.017 12.936 hybrid contribution 0.848 -1.507 -0.349 1.764 sum 2.782 11.243 0.668 11.602 Atomic orbital electron populations 1.20377 0.86912 1.02959 1.03372 1.24864 1.00937 0.95414 1.08482 1.83647 0.95766 1.07483 1.73562 1.25678 1.03285 0.95679 1.09870 1.20197 0.95046 0.97480 1.04009 1.17980 0.93512 0.92477 1.05642 1.18515 0.94311 0.90897 0.94121 1.21557 1.05724 0.98309 1.05575 1.22896 0.97073 0.90161 0.95728 1.68688 1.14367 1.34264 1.06112 1.18931 0.88771 0.91095 0.91028 1.19941 1.20394 0.95593 1.14465 0.89580 1.26985 0.93852 1.01346 0.97505 1.70222 1.18330 1.20809 1.28554 0.85203 0.79416 0.76344 0.78362 1.18291 1.19117 1.18320 1.21880 1.07807 0.95290 1.04952 0.89597 0.89583 0.92280 0.78895 0.84838 0.86056 0.84272 0.91020 0.88147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.15 9.06 71.24 0.65 -1.50 15 2 C -0.18 -5.64 6.50 24.86 0.16 -5.47 15 3 S 0.13 3.16 23.31 -56.49 -1.32 1.85 15 4 C -0.21 -5.33 11.19 66.65 0.75 -4.58 15 5 C -0.14 -4.50 9.86 21.39 0.21 -4.29 15 6 C -0.08 -3.16 5.40 -21.15 -0.11 -3.27 15 7 C 0.03 1.36 5.10 -19.88 -0.10 1.26 15 8 C -0.29 -12.78 8.54 22.76 0.19 -12.59 15 9 C 0.11 5.17 11.16 84.78 0.95 6.12 15 10 N -0.52 -29.81 7.85 -189.42 -1.49 -31.30 15 11 C 0.23 12.97 6.55 40.18 0.26 13.23 15 12 C -0.47 -26.44 9.14 23.49 0.21 -26.23 15 13 H 0.09 4.51 7.85 -2.91 -0.02 4.49 15 14 C 0.02 1.28 5.50 85.29 0.47 1.75 15 15 N -0.76 -41.76 11.46 21.84 0.25 -41.51 15 16 Si 0.99 38.83 29.56 68.60 2.03 40.86 15 17 H -0.26 -9.82 7.11 99.48 0.71 -9.11 15 18 H -0.27 -9.93 7.11 99.48 0.71 -9.22 15 19 H -0.26 -9.84 7.11 99.48 0.71 -9.13 15 20 C -0.28 -14.16 9.47 23.08 0.22 -13.94 15 21 H 0.09 2.12 8.01 -2.39 -0.02 2.10 15 22 H 0.09 1.90 8.14 -2.38 -0.02 1.88 15 23 H 0.06 1.94 7.17 -2.39 -0.02 1.92 15 24 H 0.19 3.48 8.06 -2.91 -0.02 3.46 15 25 H 0.13 4.41 8.06 -2.91 -0.02 4.38 15 26 H 0.12 4.64 7.51 -2.91 -0.02 4.61 15 27 H 0.14 6.00 8.06 -2.91 -0.02 5.98 15 28 H 0.28 13.89 8.29 -92.71 -0.77 13.12 15 29 H 0.10 4.93 8.06 -2.91 -0.02 4.91 15 Total: -1.00 -64.71 270.17 4.49 -60.23 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 1.16 Total: 19.39 kcal Atomic # 6 Polarization: -53.38 SS G_CDS: 3.85 Total: -49.52 kcal Atomic # 7 Polarization: -71.57 SS G_CDS: -1.24 Total: -72.81 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Atomic # 16 Polarization: 3.16 SS G_CDS: -1.32 Total: 1.85 kcal Total: -64.71 4.49 -60.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240501547.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.721 kcal (2) G-P(sol) polarization free energy of solvation -64.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds