Wall clock time and date at job start Thu Apr 9 2020 12:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99771 * 2 1 4 4 H 1.48504 * 109.47092 * 269.99470 * 3 2 1 5 5 H 1.48497 * 109.47485 * 29.99719 * 3 2 1 6 6 H 1.48502 * 109.46984 * 149.99941 * 3 2 1 7 7 C 1.37883 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99907 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99700 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47412 * 299.99695 * 9 7 2 11 11 O 1.42894 * 109.46973 * 60.00211 * 9 7 2 12 12 C 1.52998 * 109.46647 * 180.02562 * 9 7 2 13 13 N 1.46905 * 109.46899 * 180.02562 * 12 9 7 14 14 C 1.46900 * 111.00113 * 185.60715 * 13 12 9 15 15 C 1.53005 * 109.51980 * 63.43640 * 14 13 12 16 16 O 1.42900 * 109.47287 * 54.21573 * 15 14 13 17 17 C 1.53120 * 109.52436 * 303.31350 * 14 13 12 18 18 C 1.53035 * 109.27355 * 297.68333 * 17 14 13 19 19 N 1.46843 * 109.52754 * 300.81737 * 18 17 14 20 20 C 1.46853 * 111.19603 * 61.74553 * 19 18 17 21 21 C 1.53044 * 109.52240 * 298.25926 * 20 19 18 22 22 H 0.96995 * 119.99890 * 0.02562 * 1 2 3 23 23 H 0.96696 * 114.00147 * 60.00109 * 11 9 7 24 24 H 1.08999 * 109.47445 * 60.00496 * 12 9 7 25 25 H 1.09003 * 109.47478 * 299.99581 * 12 9 7 26 26 H 1.00896 * 111.00031 * 309.56019 * 13 12 9 27 27 H 1.09002 * 109.46790 * 174.21311 * 15 14 13 28 28 H 1.09000 * 109.47055 * 294.21086 * 15 14 13 29 29 H 0.96695 * 113.99663 * 180.02562 * 16 15 14 30 30 H 1.08997 * 109.50646 * 177.74282 * 17 14 13 31 31 H 1.09005 * 109.50467 * 57.62400 * 17 14 13 32 32 H 1.09009 * 109.46302 * 180.80318 * 18 17 14 33 33 H 1.09001 * 109.45738 * 60.83253 * 18 17 14 34 34 H 1.00894 * 111.00446 * 185.84163 * 19 18 17 35 35 H 1.08997 * 109.45834 * 58.27044 * 20 19 18 36 36 H 1.08994 * 109.46443 * 178.24272 * 20 19 18 37 37 H 1.08999 * 109.50018 * 299.24185 * 21 20 19 38 38 H 1.08993 * 109.50386 * 179.12103 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5568 0.8903 11 8 0.4301 -2.5751 -1.1665 12 6 2.2454 -3.6620 0.0018 13 7 1.5109 -4.9342 0.0012 14 6 2.4296 -6.0726 0.1364 15 6 3.1389 -5.9991 1.4901 16 8 2.1664 -5.9072 2.5331 17 6 3.4678 -6.0287 -0.9883 18 6 2.7574 -6.1638 -2.3370 19 7 2.0186 -7.4321 -2.3778 20 6 0.9840 -7.4778 -1.3366 21 6 1.6414 -7.3819 0.0421 22 1 -0.4850 0.8400 -0.0004 23 1 0.9225 -2.5300 -1.9975 24 1 2.8713 -3.6039 0.8923 25 1 2.8728 -3.6047 -0.8877 26 1 0.8098 -4.9473 0.7266 27 1 3.7418 -6.8958 1.6335 28 1 3.7831 -5.1202 1.5155 29 1 2.5458 -5.8566 3.4211 30 1 4.1732 -6.8503 -0.8646 31 1 4.0033 -5.0800 -0.9524 32 1 3.4951 -6.1472 -3.1393 33 1 2.0621 -5.3342 -2.4659 34 1 1.6195 -7.5890 -3.2911 35 1 0.2972 -6.6420 -1.4703 36 1 0.4338 -8.4156 -1.4121 37 1 2.3182 -8.2249 0.1819 38 1 0.8722 -7.4001 0.8141 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580055152.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:18:24 Heat of formation + Delta-G solvation = -100.902209 kcal Electronic energy + Delta-G solvation = -19130.312317 eV Core-core repulsion = 16200.259559 eV Total energy + Delta-G solvation = -2930.052758 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 244.157 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.52426 -36.39498 -35.87733 -33.79802 -32.05981 -30.80641 -30.39060 -27.39589 -26.23408 -24.22324 -22.82408 -21.44127 -20.37060 -18.56955 -17.22395 -16.76366 -16.37787 -15.39419 -15.03447 -14.58939 -14.52956 -14.09228 -13.70655 -13.57263 -13.36865 -13.14303 -12.41600 -12.16478 -11.96946 -11.85890 -11.35241 -11.28252 -10.94876 -10.89594 -10.81131 -10.72263 -10.24909 -10.06176 -10.00878 -9.73274 -8.93092 -8.56174 -8.26793 -8.01930 -7.58992 -5.98388 -4.16662 3.27606 3.34642 3.36849 4.21407 4.39475 4.45942 4.83748 5.00477 5.05893 5.28984 5.31859 5.50585 5.51236 5.55482 5.71583 5.76999 5.93285 6.03247 6.05346 6.20707 6.27378 6.29734 6.33365 6.37807 6.53925 6.58337 6.92630 7.25066 7.56678 7.66058 7.74531 7.75887 7.89031 8.09401 8.25044 8.87418 9.47997 9.64602 11.05742 Molecular weight = 244.16amu Principal moments of inertia in cm(-1) A = 0.029705 B = 0.006430 C = 0.005997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.362364 B = 4353.348798 C = 4668.221330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.079 3.921 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.572 4.572 8 H 0.053 0.947 9 C 0.235 3.765 10 H 0.050 0.950 11 O -0.555 6.555 12 C 0.033 3.967 13 N -0.661 5.661 14 C 0.115 3.885 15 C 0.046 3.954 16 O -0.567 6.567 17 C -0.103 4.103 18 C 0.066 3.934 19 N -0.693 5.693 20 C 0.062 3.938 21 C -0.095 4.095 22 H 0.260 0.740 23 H 0.341 0.659 24 H 0.022 0.978 25 H 0.059 0.941 26 H 0.345 0.655 27 H 0.040 0.960 28 H 0.047 0.953 29 H 0.376 0.624 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.336 0.664 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.932 -13.495 -0.310 14.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.127 4.127 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.611 4.611 8 H 0.071 0.929 9 C 0.177 3.823 10 H 0.068 0.932 11 O -0.357 6.357 12 C -0.095 4.095 13 N -0.292 5.292 14 C 0.023 3.977 15 C -0.034 4.034 16 O -0.371 6.371 17 C -0.141 4.141 18 C -0.064 4.064 19 N -0.324 5.324 20 C -0.067 4.067 21 C -0.133 4.133 22 H 0.070 0.930 23 H 0.184 0.816 24 H 0.040 0.960 25 H 0.077 0.923 26 H 0.164 0.836 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.222 0.778 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.153 0.847 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.292 -13.824 -0.657 14.817 hybrid contribution 1.154 1.767 0.823 2.266 sum 6.447 -12.057 0.166 13.673 Atomic orbital electron populations 1.70082 1.05899 1.26327 1.47099 1.25031 0.94673 0.99043 0.93928 0.86694 0.79922 0.83663 0.78184 1.20534 1.21131 1.19952 1.21639 0.93043 0.91669 1.54732 0.92865 1.19298 0.87841 0.88948 0.86223 0.93195 1.86557 1.37810 1.96335 1.14987 1.22899 0.97760 0.90059 0.98822 1.60681 1.14309 1.01061 1.53138 1.21018 0.92951 0.93085 0.90631 1.22977 0.91414 0.99330 0.89664 1.86437 1.35834 1.97245 1.17600 1.21579 0.96818 1.01546 0.94151 1.21748 0.97226 0.91020 0.96364 1.60387 1.29277 1.35090 1.07619 1.21814 0.92997 1.00405 0.91468 1.21489 0.99415 0.95612 0.96790 0.93039 0.81587 0.96016 0.92275 0.83573 0.94197 0.93471 0.77816 0.91786 0.91302 0.91883 0.92849 0.84688 0.93092 0.92053 0.91997 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.69 12.84 55.43 0.71 -24.98 16 2 C 0.08 2.24 5.40 -17.82 -0.10 2.15 16 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.57 -15.81 8.76 -34.44 -0.30 -16.11 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.23 5.99 2.97 -27.89 -0.08 5.91 16 10 H 0.05 1.43 8.14 -51.93 -0.42 1.01 16 11 O -0.56 -14.55 12.60 -35.23 -0.44 -15.00 16 12 C 0.03 0.68 4.46 -3.82 -0.02 0.67 16 13 N -0.66 -11.87 4.65 -99.83 -0.46 -12.33 16 14 C 0.12 1.72 0.38 -131.48 -0.05 1.67 16 15 C 0.05 0.64 5.50 37.16 0.20 0.84 16 16 O -0.57 -7.98 12.51 -35.23 -0.44 -8.42 16 17 C -0.10 -1.44 4.48 -26.65 -0.12 -1.56 16 18 C 0.07 0.91 6.40 -3.84 -0.02 0.88 16 19 N -0.69 -8.92 6.85 -113.81 -0.78 -9.70 16 20 C 0.06 0.84 6.41 -3.83 -0.02 0.82 16 21 C -0.09 -1.31 4.92 -26.65 -0.13 -1.44 16 22 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 23 H 0.34 8.11 9.04 45.56 0.41 8.52 16 24 H 0.02 0.45 6.26 -51.93 -0.33 0.13 16 25 H 0.06 1.20 6.53 -51.93 -0.34 0.86 16 26 H 0.35 6.78 7.96 -39.29 -0.31 6.47 16 27 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.69 6.66 -51.93 -0.35 0.34 16 29 H 0.38 3.65 9.12 45.56 0.42 4.06 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.01 6.36 -51.93 -0.33 0.68 16 32 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 33 H 0.05 0.87 7.69 -51.93 -0.40 0.47 16 34 H 0.34 3.77 8.90 -39.30 -0.35 3.43 16 35 H 0.05 0.80 7.69 -51.93 -0.40 0.40 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.99 7.92 -51.93 -0.41 0.58 16 LS Contribution 299.03 15.07 4.51 4.51 Total: -1.00 -30.96 299.03 -7.04 -38.00 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: -4.46 Total: 17.83 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -0.64 Total: -6.18 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: -0.53 Total: -47.01 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.88 Total: -23.41 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.96 -7.04 -38.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055152.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.907 kcal (2) G-P(sol) polarization free energy of solvation -30.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds