Wall clock time and date at job start Thu Apr 9 2020 12:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35625 * 116.99582 * 2 1 4 4 C 1.38300 * 120.96767 * 0.02562 * 3 2 1 5 5 C 1.38939 * 119.81313 * 179.97438 * 4 3 2 6 6 N 1.31258 * 121.68020 * 0.02562 * 5 4 3 7 7 C 1.33682 * 121.58930 * 359.97438 * 6 5 4 8 8 C 1.40683 * 120.96541 * 180.02562 * 7 6 5 9 9 C 1.38393 * 118.10436 * 179.68757 * 8 7 6 10 10 N 1.39128 * 120.18600 * 180.25726 * 9 8 7 11 11 C 1.36808 * 119.99854 * 180.27972 * 10 9 8 12 12 H 1.07998 * 120.00298 * 359.97438 * 11 10 9 13 13 C 1.38831 * 119.99575 * 179.97438 * 11 10 9 14 14 N 1.31569 * 120.00346 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99803 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46830 * 60.00015 * 15 13 11 17 17 H 1.48497 * 109.47264 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47386 * 300.00192 * 15 13 11 19 19 C 1.40231 * 119.63239 * 0.53952 * 9 8 7 20 20 N 1.30913 * 121.43403 * 359.46438 * 19 9 8 21 21 C 1.33490 * 121.60566 * 0.25447 * 20 19 9 22 22 H 1.09002 * 109.47518 * 59.99373 * 1 2 3 23 23 H 1.08997 * 109.46892 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47145 * 299.99334 * 1 2 3 25 25 H 1.07993 * 120.09340 * 0.02562 * 4 3 2 26 26 H 1.07999 * 119.15736 * 180.02562 * 5 4 3 27 27 H 1.08008 * 120.94368 * 359.97438 * 8 7 6 28 28 H 0.96998 * 119.99833 * 0.28227 * 10 9 8 29 29 H 0.96998 * 120.00321 * 179.97438 * 14 13 11 30 30 H 1.08002 * 119.28528 * 179.74885 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2085 0.0000 4 6 1.3110 2.3809 0.0005 5 6 1.9665 3.6059 0.0011 6 7 3.2766 3.6867 0.0006 7 6 4.0456 2.5932 0.0000 8 6 5.4488 2.6951 0.0001 9 6 6.1874 1.5248 0.0062 10 7 7.5778 1.5752 0.0118 11 6 8.3042 0.4159 0.0121 12 1 7.7984 -0.5383 0.0083 13 6 9.6916 0.4662 0.0172 14 7 10.3078 1.6286 0.0223 15 14 10.6835 -1.1167 0.0182 16 1 10.3575 -1.9059 -1.1968 17 1 12.1327 -0.7928 0.0247 18 1 10.3488 -1.9099 1.2282 19 6 5.5267 0.2879 0.0006 20 7 4.2198 0.2119 0.0001 21 6 3.4554 1.3063 -0.0001 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5137 0.8901 25 1 0.2317 2.3442 0.0014 26 1 1.3832 4.5148 0.0019 27 1 5.9356 3.6593 0.0001 28 1 8.0320 2.4322 0.0157 29 1 11.2771 1.6638 0.0263 30 1 6.1087 -0.6219 0.0013 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163187173.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:20:07 Heat of formation + Delta-G solvation = 27.371608 kcal Electronic energy + Delta-G solvation = -16626.449645 eV Core-core repulsion = 13808.009171 eV Total energy + Delta-G solvation = -2818.440474 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.38729 -38.56922 -37.12733 -35.37915 -32.66515 -31.35608 -29.86785 -28.68599 -27.17085 -25.11369 -23.88171 -22.39568 -21.39059 -18.62798 -18.10021 -17.28932 -17.02546 -15.68195 -15.61811 -15.06665 -14.52606 -14.34644 -13.81223 -13.74311 -13.51916 -13.28621 -12.28284 -12.16626 -12.03509 -11.61825 -11.49325 -11.38373 -11.00339 -10.74360 -10.71260 -10.59972 -9.70563 -9.36011 -8.81868 -8.27959 -7.70790 -7.05179 -6.94899 -4.04663 1.19073 1.60659 2.81079 3.00845 3.02680 3.03653 3.41618 3.70376 3.78020 4.65958 4.70277 5.01933 5.07243 5.07550 5.17632 5.21812 5.41582 5.46784 5.65325 5.72465 5.87187 6.17851 6.32768 6.42231 6.72571 6.86520 7.03833 7.07279 7.22099 7.52814 7.67729 8.34903 8.70177 8.74931 8.90823 9.09396 10.18826 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.039802 B = 0.005389 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.316701 B = 5194.282543 C = 5882.446801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.295 6.295 3 C 0.227 3.773 4 C -0.342 4.342 5 C 0.173 3.827 6 N -0.526 5.526 7 C 0.184 3.816 8 C -0.252 4.252 9 C 0.161 3.839 10 N -0.511 5.511 11 C -0.309 4.309 12 H 0.111 0.889 13 C 0.029 3.971 14 N -0.869 5.869 15 Si 0.940 3.060 16 H -0.267 1.267 17 H -0.279 1.279 18 H -0.267 1.267 19 C 0.085 3.915 20 N -0.423 5.423 21 C -0.047 4.047 22 H 0.054 0.946 23 H 0.097 0.903 24 H 0.054 0.946 25 H 0.127 0.873 26 H 0.146 0.854 27 H 0.125 0.875 28 H 0.406 0.594 29 H 0.284 0.716 30 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.968 -1.392 -0.021 11.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.204 6.204 3 C 0.173 3.827 4 C -0.367 4.367 5 C 0.001 3.999 6 N -0.240 5.240 7 C 0.063 3.937 8 C -0.287 4.287 9 C 0.030 3.970 10 N -0.108 5.108 11 C -0.439 4.439 12 H 0.129 0.871 13 C -0.179 4.179 14 N -0.502 5.502 15 Si 0.765 3.235 16 H -0.192 1.192 17 H -0.204 1.204 18 H -0.192 1.192 19 C -0.099 4.099 20 N -0.131 5.131 21 C -0.170 4.170 22 H 0.073 0.927 23 H 0.115 0.885 24 H 0.073 0.927 25 H 0.145 0.855 26 H 0.164 0.836 27 H 0.143 0.857 28 H 0.242 0.758 29 H 0.094 0.906 30 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -10.371 -1.727 -0.018 10.514 hybrid contribution 0.451 -0.088 0.006 0.459 sum -9.920 -1.816 -0.012 10.085 Atomic orbital electron populations 1.23072 0.79058 1.03583 1.01311 1.86139 1.20608 1.26856 1.86808 1.19146 0.90272 0.84155 0.89156 1.21584 1.00237 0.92910 1.21991 1.22382 0.90543 0.96025 0.90996 1.67937 1.05664 1.31358 1.19062 1.18816 0.93652 0.87307 0.93919 1.19884 0.90371 0.96668 1.21750 1.18721 0.84863 0.94552 0.98898 1.41205 1.01219 1.09814 1.58583 1.19921 0.89085 0.86967 1.47955 0.87124 1.25495 0.97047 0.99414 0.95919 1.69661 1.11328 1.24844 1.44408 0.85745 0.78209 0.79921 0.79654 1.19152 1.20361 1.19160 1.22599 0.89532 0.96386 1.01361 1.67547 1.05917 1.30758 1.08841 1.18439 0.90478 0.90837 1.17249 0.92702 0.88471 0.92698 0.85484 0.83633 0.85714 0.75788 0.90580 0.82542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.84 101.05 0.99 1.27 16 2 O -0.29 -5.09 10.33 -18.57 -0.19 -5.28 16 3 C 0.23 4.33 6.78 -38.35 -0.26 4.07 16 4 C -0.34 -5.49 9.10 -39.30 -0.36 -5.85 16 5 C 0.17 2.90 11.14 -17.54 -0.20 2.70 16 6 N -0.53 -10.77 10.33 -11.04 -0.11 -10.88 16 7 C 0.18 4.09 6.60 -84.86 -0.56 3.53 16 8 C -0.25 -5.62 10.00 -38.60 -0.39 -6.01 16 9 C 0.16 3.60 6.63 -83.74 -0.55 3.04 16 10 N -0.51 -11.78 5.43 -9.53 -0.05 -11.83 16 11 C -0.31 -7.19 9.56 -15.11 -0.14 -7.33 16 12 H 0.11 2.40 5.67 -52.49 -0.30 2.11 16 13 C 0.03 0.66 5.50 -17.44 -0.10 0.57 16 14 N -0.87 -21.22 13.05 55.49 0.72 -20.49 16 15 Si 0.94 17.98 29.55 -169.99 -5.02 12.95 16 16 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 17 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 18 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 19 C 0.08 1.85 10.46 -17.19 -0.18 1.67 16 20 N -0.42 -9.50 10.13 -10.64 -0.11 -9.61 16 21 C -0.05 -1.04 6.62 -84.66 -0.56 -1.60 16 22 H 0.05 0.53 7.71 -51.93 -0.40 0.13 16 23 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.05 0.53 7.70 -51.93 -0.40 0.13 16 25 H 0.13 1.56 6.41 -52.49 -0.34 1.23 16 26 H 0.15 1.83 8.06 -52.49 -0.42 1.41 16 27 H 0.12 2.66 8.06 -52.48 -0.42 2.24 16 28 H 0.41 9.48 7.90 -40.82 -0.32 9.15 16 29 H 0.28 6.53 8.31 -40.82 -0.34 6.19 16 30 H 0.16 3.15 5.93 -52.49 -0.31 2.84 16 LS Contribution 266.25 15.07 4.01 4.01 Total: -1.00 -27.90 266.25 -5.52 -33.43 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -2.47 Total: 11.65 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -2.30 Total: -3.94 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: 0.45 Total: -52.82 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -0.19 Total: -5.28 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.02 Total: 12.95 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -27.90 -5.52 -33.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187173.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.799 kcal (2) G-P(sol) polarization free energy of solvation -27.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds