Wall clock time and date at job start Thu Apr 9 2020 12:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.51080 * 2 1 4 4 C 1.53104 * 109.50637 * 120.09014 * 2 1 3 5 5 O 1.43016 * 109.25493 * 176.82542 * 4 2 1 6 6 C 1.43013 * 113.74201 * 301.32706 * 5 4 2 7 7 C 1.53095 * 109.25861 * 58.67270 * 6 5 4 8 8 N 1.47018 * 109.29409 * 303.12968 * 7 6 5 9 9 C 1.46899 * 111.00176 * 182.41234 * 8 7 6 10 10 C 1.52997 * 109.46787 * 66.04691 * 9 8 7 11 11 S 1.81401 * 109.47049 * 180.02562 * 10 9 8 12 12 C 1.81400 * 103.00422 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47435 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99956 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00005 * 180.02562 * 13 12 11 16 16 N 1.31521 * 120.00402 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00320 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46969 * 89.99668 * 17 15 13 19 19 H 1.48497 * 109.47536 * 210.00287 * 17 15 13 20 20 H 1.48507 * 109.47027 * 330.00344 * 17 15 13 21 21 H 1.09001 * 109.46836 * 299.91282 * 1 2 3 22 22 H 1.08998 * 109.46769 * 59.91098 * 1 2 3 23 23 H 1.08997 * 109.47133 * 179.91478 * 1 2 3 24 24 H 1.08995 * 109.50506 * 56.88939 * 4 2 1 25 25 H 1.08994 * 109.50501 * 296.75645 * 4 2 1 26 26 H 1.09008 * 109.50640 * 298.73963 * 6 5 4 27 27 H 1.09003 * 109.50700 * 178.61214 * 6 5 4 28 28 H 1.09002 * 109.50646 * 63.08866 * 7 6 5 29 29 H 1.09003 * 109.50955 * 183.17419 * 7 6 5 30 30 H 1.08994 * 109.47258 * 186.04875 * 9 8 7 31 31 H 1.09001 * 109.46915 * 306.05232 * 9 8 7 32 32 H 1.09000 * 109.47767 * 299.99901 * 10 9 8 33 33 H 1.09000 * 109.47472 * 60.00546 * 10 9 8 34 34 H 1.09003 * 109.47128 * 300.00503 * 12 11 10 35 35 H 1.09005 * 109.46900 * 59.99596 * 12 11 10 36 36 H 0.96997 * 120.00276 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7235 1.2487 5 8 3.4694 -0.7854 1.2064 6 6 3.9827 -1.4564 0.0524 7 6 3.4912 -0.7403 -1.2084 8 7 2.0217 -0.6951 -1.1996 9 6 1.5071 -0.0651 -2.4228 10 6 1.8370 -0.9475 -3.6284 11 16 1.2022 -0.1693 -5.1391 12 6 1.6815 -1.3439 -6.4357 13 6 1.2167 -0.8315 -7.7745 14 1 0.6865 0.1071 -7.8390 15 6 1.4685 -1.5609 -8.9170 16 7 2.1138 -2.7043 -8.8385 17 14 0.8918 -0.9262 -10.5765 18 1 1.9542 -0.0821 -11.1800 19 1 0.6031 -2.0745 -11.4727 20 1 -0.3404 -0.1172 -10.3961 21 1 -0.3633 0.5125 0.8908 22 1 -0.3633 0.5152 -0.8892 23 1 -0.3633 -1.0276 -0.0015 24 1 1.6337 -1.7341 1.2762 25 1 1.7268 -0.1792 2.1391 26 1 3.6317 -2.4883 0.0451 27 1 5.0724 -1.4421 0.0777 28 1 3.8866 0.2753 -1.2277 29 1 3.8334 -1.2809 -2.0908 30 1 0.4265 0.0529 -2.3438 31 1 1.9712 0.9129 -2.5507 32 1 2.9177 -1.0656 -3.7076 33 1 1.3730 -1.9255 -3.5007 34 1 2.7660 -1.4529 -6.4444 35 1 1.2207 -2.3117 -6.2375 36 1 2.2912 -3.2173 -9.6424 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413016607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:19:14 Heat of formation + Delta-G solvation = -52.587210 kcal Electronic energy + Delta-G solvation = -15690.201418 eV Core-core repulsion = 13107.277965 eV Total energy + Delta-G solvation = -2582.923453 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.119 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.89178 -36.37032 -33.14890 -33.03756 -30.83993 -28.54338 -27.67465 -26.43824 -23.27288 -22.83008 -21.86279 -20.11071 -16.78556 -16.50647 -16.40498 -15.69153 -15.35906 -15.09025 -14.67598 -14.44121 -14.22067 -13.80272 -12.99362 -12.51092 -12.46195 -12.24687 -12.11860 -12.11573 -11.96614 -11.47790 -11.31827 -10.90628 -10.75442 -10.69276 -10.59370 -9.98261 -9.75101 -9.52057 -8.87237 -8.61710 -8.46529 -6.69966 -6.19653 -4.23885 2.55133 3.26078 3.31655 3.37045 3.66038 3.81068 3.87516 4.35464 4.57809 4.78385 4.80155 4.95256 5.07700 5.15572 5.17481 5.29618 5.32575 5.41627 5.46909 5.54234 5.65054 5.70873 5.75959 5.85908 5.99100 6.09569 6.20472 6.86000 6.89692 6.98806 7.09296 7.11379 7.74942 8.00975 8.77975 9.39180 10.91723 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.051672 B = 0.004006 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.746759 B = 6987.346484 C = 7346.920968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.045 3.955 3 H 0.049 0.951 4 C 0.070 3.930 5 O -0.388 6.388 6 C 0.064 3.936 7 C 0.013 3.987 8 N -0.531 5.531 9 C 0.072 3.928 10 C -0.084 4.084 11 S -0.311 6.311 12 C 0.095 3.905 13 C -0.512 4.512 14 H 0.067 0.933 15 C 0.065 3.935 16 N -0.893 5.893 17 Si 0.907 3.093 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.271 1.271 21 H 0.061 0.939 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.096 0.904 26 H 0.060 0.940 27 H 0.097 0.903 28 H 0.043 0.957 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.041 0.959 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.035 0.965 35 H 0.036 0.964 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.619 2.941 18.256 18.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.064 4.064 3 H 0.067 0.933 4 C -0.007 4.007 5 O -0.307 6.307 6 C -0.013 4.013 7 C -0.115 4.115 8 N -0.258 5.258 9 C -0.056 4.056 10 C -0.233 4.233 11 S -0.085 6.085 12 C -0.051 4.051 13 C -0.552 4.552 14 H 0.085 0.915 15 C -0.139 4.139 16 N -0.532 5.532 17 Si 0.734 3.266 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.195 1.195 21 H 0.080 0.920 22 H 0.084 0.916 23 H 0.086 0.914 24 H 0.078 0.922 25 H 0.114 0.886 26 H 0.078 0.922 27 H 0.115 0.885 28 H 0.061 0.939 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.088 3.334 18.226 18.529 hybrid contribution 0.602 -0.242 -1.167 1.336 sum 0.690 3.091 17.059 17.350 Atomic orbital electron populations 1.21860 0.93395 1.03065 1.02265 1.22306 0.96506 0.96469 0.91145 0.93339 1.22713 0.80898 1.00369 0.96759 1.87961 1.20725 1.78573 1.43402 1.22683 0.98870 0.95731 0.83996 1.22857 0.88287 1.00540 0.99805 1.62287 1.08190 1.53500 1.01823 1.21898 1.01287 0.95151 0.87257 1.23178 1.03002 1.01891 0.95238 1.86528 1.78794 1.40285 1.02942 1.21021 0.99012 0.93276 0.91831 1.20690 1.37671 1.07274 0.89525 0.91460 1.24967 0.94863 0.94701 0.99353 1.69957 1.40302 1.13450 1.29457 0.86347 0.79281 0.78428 0.82575 1.20354 1.20962 1.19529 0.91971 0.91611 0.91428 0.92205 0.88639 0.92179 0.88457 0.93877 0.89063 0.89304 0.94062 0.91173 0.90181 0.94710 0.94587 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.92 37.16 0.33 -1.07 16 2 C 0.04 0.49 2.59 -67.55 -0.17 0.31 16 3 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 4 C 0.07 0.70 6.29 37.21 0.23 0.93 16 5 O -0.39 -4.58 10.83 -35.23 -0.38 -4.96 16 6 C 0.06 0.68 7.01 37.21 0.26 0.94 16 7 C 0.01 0.16 5.43 -3.71 -0.02 0.14 16 8 N -0.53 -6.77 4.54 -226.26 -1.03 -7.80 16 9 C 0.07 1.04 4.74 -3.83 -0.02 1.02 16 10 C -0.08 -1.45 5.87 37.16 0.22 -1.23 16 11 S -0.31 -6.81 21.66 -107.50 -2.33 -9.13 16 12 C 0.10 2.51 5.70 36.00 0.21 2.72 16 13 C -0.51 -14.57 9.13 -34.44 -0.31 -14.88 16 14 H 0.07 1.91 7.71 -52.49 -0.40 1.51 16 15 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 16 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 17 Si 0.91 21.43 29.54 -169.99 -5.02 16.41 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.06 0.67 6.19 -51.93 -0.32 0.35 16 23 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 27 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.09 1.11 6.37 -51.93 -0.33 0.77 16 30 H 0.09 1.26 5.79 -51.93 -0.30 0.96 16 31 H 0.04 0.61 8.12 -51.93 -0.42 0.19 16 32 H 0.07 1.19 6.50 -51.92 -0.34 0.85 16 33 H 0.08 1.40 8.14 -51.92 -0.42 0.98 16 34 H 0.03 0.95 8.14 -51.92 -0.42 0.53 16 35 H 0.04 0.98 8.14 -51.92 -0.42 0.56 16 36 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 300.86 15.07 4.53 4.53 Total: -1.00 -29.83 300.86 -8.77 -38.60 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -5.90 Total: -2.86 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 0.62 Total: -9.40 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: -0.29 Total: -33.18 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: -0.38 Total: -4.96 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -6.81 SS G_CDS: -2.33 Total: -9.13 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.83 -8.77 -38.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413016607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.992 kcal (2) G-P(sol) polarization free energy of solvation -29.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds