Wall clock time and date at job start Thu Apr 9 2020 12:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00486 * 2 1 4 4 C 1.52991 * 109.47427 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47510 * 60.37725 * 4 3 2 6 6 C 1.36933 * 120.00243 * 263.15563 * 5 4 3 7 7 H 1.08000 * 120.00404 * 174.07333 * 6 5 4 8 8 C 1.38818 * 120.00042 * 354.06558 * 6 5 4 9 9 N 1.31617 * 119.99433 * 38.63236 * 8 6 5 10 10 Si 1.86797 * 120.00418 * 218.63800 * 8 6 5 11 11 H 1.48500 * 109.46942 * 59.99469 * 10 8 6 12 12 H 1.48496 * 109.47221 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46930 * 300.00027 * 10 8 6 14 14 C 1.46508 * 120.00045 * 83.14355 * 5 4 3 15 15 C 1.53001 * 109.46498 * 84.86918 * 14 5 4 16 16 H 1.08996 * 109.60213 * 306.65580 * 15 14 5 17 17 C 1.52938 * 109.60057 * 186.32865 * 15 14 5 18 18 C 1.53711 * 112.49171 * 209.96928 * 17 15 14 19 19 S 1.83394 * 104.96516 * 2.82713 * 18 17 15 20 20 C 1.55157 * 109.60222 * 66.98025 * 15 14 5 21 21 H 1.08997 * 109.47251 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47111 * 299.99676 * 1 2 3 23 23 H 1.08993 * 109.47486 * 59.99594 * 1 2 3 24 24 H 1.08999 * 109.47010 * 59.99981 * 3 2 1 25 25 H 1.09004 * 109.47001 * 300.00856 * 3 2 1 26 26 H 1.09001 * 109.47285 * 300.37394 * 4 3 2 27 27 H 1.09001 * 109.46916 * 180.37717 * 4 3 2 28 28 H 0.97005 * 119.99796 * 179.97438 * 9 8 6 29 29 H 1.08996 * 109.46941 * 204.86669 * 14 5 4 30 30 H 1.09000 * 109.46987 * 324.87370 * 14 5 4 31 31 H 1.08997 * 108.89299 * 330.76218 * 17 15 14 32 32 H 1.09007 * 108.88766 * 89.31843 * 17 15 14 33 33 H 1.08993 * 110.34156 * 121.69887 * 18 17 15 34 34 H 1.09004 * 110.34176 * 243.84975 * 18 17 15 35 35 H 1.09000 * 111.12749 * 279.27231 * 20 15 14 36 36 H 1.08998 * 111.13298 * 43.45605 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9679 0.4657 -1.2016 6 6 4.2241 -0.8781 -1.1402 7 1 4.4496 -1.4267 -2.0427 8 6 4.1941 -1.5353 0.0822 9 7 3.2838 -1.2173 0.9781 10 14 5.4458 -2.8706 0.4558 11 1 6.8146 -2.2985 0.3894 12 1 5.2013 -3.4114 1.8170 13 1 5.3169 -3.9629 -0.5420 14 6 4.1260 1.1843 -2.4684 15 6 5.5163 1.8208 -2.5235 16 1 5.6764 2.4271 -1.6320 17 6 5.6290 2.7004 -3.7695 18 6 7.0663 2.7743 -4.3091 19 16 8.0379 1.6612 -3.2227 20 6 6.5955 0.7084 -2.5971 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.6887 1.8463 0.8900 25 1 1.6886 1.8464 -0.8899 26 1 3.8570 0.6377 0.8857 27 1 3.9788 2.1803 0.0061 28 1 3.2626 -1.6767 1.8322 29 1 4.0126 0.4869 -3.2984 30 1 3.3668 1.9630 -2.5416 31 1 4.9807 2.2959 -4.5468 32 1 5.2951 3.7080 -3.5215 33 1 7.1024 2.4235 -5.3404 34 1 7.4437 3.7948 -4.2433 35 1 6.7998 0.2932 -1.6102 36 1 6.3059 -0.0742 -3.2984 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453599918.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:18:45 Heat of formation + Delta-G solvation = -9.232583 kcal Electronic energy + Delta-G solvation = -16851.715467 eV Core-core repulsion = 14270.672012 eV Total energy + Delta-G solvation = -2581.043456 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -37.41961 -36.27333 -34.37634 -31.27935 -29.65718 -28.13275 -26.23949 -25.27063 -23.76859 -22.50387 -20.41138 -19.15915 -16.86803 -16.12499 -15.57979 -15.07021 -14.62081 -14.34951 -13.97641 -13.70318 -13.45170 -13.20379 -13.05930 -12.31722 -11.93896 -11.50693 -11.35725 -11.29203 -11.09639 -10.79541 -10.69091 -10.55614 -10.38725 -10.17034 -10.08836 -9.72170 -9.48979 -9.41911 -8.33242 -8.03260 -7.37973 -6.89919 -5.69044 -2.83679 2.27059 2.78466 3.48707 3.57045 3.62139 4.59632 4.91607 4.98200 5.07971 5.25767 5.38635 5.45674 5.65248 5.71131 5.86820 5.99888 6.03721 6.05504 6.11039 6.25849 6.31387 6.37228 6.42285 6.48262 6.50102 6.64917 6.77618 6.81559 6.95534 7.67088 7.94104 8.35797 8.64846 9.25580 9.97254 10.42333 11.31123 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.021378 B = 0.008659 C = 0.006515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.419211 B = 3232.785707 C = 4296.763602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.292 6.292 3 C 0.059 3.941 4 C 0.148 3.852 5 N -0.586 5.586 6 C -0.269 4.269 7 H 0.073 0.927 8 C 0.023 3.977 9 N -0.830 5.830 10 Si 0.851 3.149 11 H -0.287 1.287 12 H -0.295 1.295 13 H -0.287 1.287 14 C 0.165 3.835 15 C -0.112 4.112 16 H 0.077 0.923 17 C -0.123 4.123 18 C -0.062 4.062 19 S -0.348 6.348 20 C -0.022 4.022 21 H 0.069 0.931 22 H 0.017 0.983 23 H 0.014 0.986 24 H 0.015 0.985 25 H 0.008 0.992 26 H 0.111 0.889 27 H 0.022 0.978 28 H 0.248 0.752 29 H 0.050 0.950 30 H 0.034 0.966 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.113 0.887 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.115 7.805 -5.872 9.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.208 6.208 3 C -0.021 4.021 4 C 0.022 3.978 5 N -0.306 5.306 6 C -0.396 4.396 7 H 0.091 0.909 8 C -0.178 4.178 9 N -0.471 5.471 10 Si 0.679 3.321 11 H -0.214 1.214 12 H -0.221 1.221 13 H -0.213 1.213 14 C 0.036 3.964 15 C -0.136 4.136 16 H 0.095 0.905 17 C -0.162 4.162 18 C -0.210 4.210 19 S -0.122 6.122 20 C -0.169 4.169 21 H 0.087 0.913 22 H 0.035 0.965 23 H 0.032 0.968 24 H 0.033 0.967 25 H 0.026 0.974 26 H 0.129 0.871 27 H 0.040 0.960 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.131 0.869 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.363 7.471 -5.474 9.362 hybrid contribution -0.871 -0.391 -0.026 0.955 sum 0.492 7.080 -5.501 8.979 Atomic orbital electron populations 1.22598 0.86898 1.00715 0.97074 1.88769 1.13434 1.24420 1.94150 1.22919 0.98583 0.85368 0.95186 1.21382 0.89299 0.93667 0.93475 1.43993 1.77212 1.05556 1.03876 1.18845 1.43206 0.84509 0.93066 0.90868 1.24649 0.98050 0.97453 0.97616 1.70498 1.27011 1.41689 1.07901 0.87103 0.85196 0.82635 0.77175 1.21420 1.22096 1.21289 1.20676 0.91397 0.94605 0.89746 1.22781 0.99052 0.94792 0.96933 0.90504 1.22014 0.94695 1.01049 0.98484 1.23808 0.96532 1.00625 1.00077 1.87693 1.21009 1.44637 1.58813 1.24347 0.89957 0.98116 1.04523 0.91279 0.96464 0.96799 0.96739 0.97426 0.87136 0.96002 0.94172 0.93189 0.94749 0.91329 0.91150 0.90004 0.89282 0.86860 0.89710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.29 -6.97 7.69 -35.23 -0.27 -7.24 16 3 C 0.06 1.27 6.26 37.15 0.23 1.50 16 4 C 0.15 3.31 5.59 -4.05 -0.02 3.29 16 5 N -0.59 -13.32 2.33 -173.24 -0.40 -13.72 16 6 C -0.27 -6.87 8.55 -15.06 -0.13 -7.00 16 7 H 0.07 1.89 7.99 -52.49 -0.42 1.48 16 8 C 0.02 0.61 4.80 -17.43 -0.08 0.53 16 9 N -0.83 -22.52 8.19 55.49 0.45 -22.06 16 10 Si 0.85 20.83 29.68 -169.99 -5.05 15.79 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 C 0.17 3.08 4.94 -4.04 -0.02 3.06 16 15 C -0.11 -1.84 2.76 -89.51 -0.25 -2.09 16 16 H 0.08 1.36 8.04 -51.93 -0.42 0.94 16 17 C -0.12 -1.62 5.85 -26.39 -0.15 -1.78 16 18 C -0.06 -0.80 7.38 37.53 0.28 -0.53 16 19 S -0.35 -5.77 23.22 -107.50 -2.50 -8.27 16 20 C -0.02 -0.39 6.00 38.30 0.23 -0.16 16 21 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 22 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 23 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 24 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.01 0.16 7.98 -51.93 -0.41 -0.26 16 26 H 0.11 2.81 5.29 -51.93 -0.27 2.54 16 27 H 0.02 0.44 8.02 -51.93 -0.42 0.02 16 28 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 29 H 0.05 0.94 7.91 -51.93 -0.41 0.53 16 30 H 0.03 0.61 7.95 -51.93 -0.41 0.20 16 31 H 0.07 0.85 7.80 -51.93 -0.41 0.44 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.11 2.30 8.05 -51.93 -0.42 1.88 16 36 H 0.08 1.52 8.07 -51.93 -0.42 1.10 16 LS Contribution 297.97 15.07 4.49 4.49 Total: -1.00 -27.63 297.97 -8.18 -35.81 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -6.10 Total: -3.21 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 1.20 Total: -1.58 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.05 Total: -35.79 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -0.27 Total: -7.24 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.05 Total: 15.79 kcal Atomic # 16 Polarization: -5.77 SS G_CDS: -2.50 Total: -8.27 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.63 -8.18 -35.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453599918.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.578 kcal (2) G-P(sol) polarization free energy of solvation -27.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds