Wall clock time and date at job start Thu Apr 9 2020 12:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00486 * 2 1 4 4 C 1.52991 * 109.47427 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47510 * 60.37725 * 4 3 2 6 6 C 1.36933 * 120.00243 * 263.15563 * 5 4 3 7 7 H 1.08000 * 120.00404 * 174.07333 * 6 5 4 8 8 C 1.38818 * 120.00042 * 354.06558 * 6 5 4 9 9 N 1.31617 * 119.99433 * 38.63236 * 8 6 5 10 10 Si 1.86797 * 120.00418 * 218.63800 * 8 6 5 11 11 H 1.48500 * 109.46942 * 59.99469 * 10 8 6 12 12 H 1.48496 * 109.47221 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46930 * 300.00027 * 10 8 6 14 14 C 1.46508 * 120.00045 * 83.14355 * 5 4 3 15 15 C 1.53001 * 109.46498 * 84.86918 * 14 5 4 16 16 H 1.08996 * 109.60213 * 306.65580 * 15 14 5 17 17 C 1.52938 * 109.60057 * 186.32865 * 15 14 5 18 18 C 1.53711 * 112.49171 * 209.96928 * 17 15 14 19 19 S 1.83394 * 104.96516 * 2.82713 * 18 17 15 20 20 C 1.55157 * 109.60222 * 66.98025 * 15 14 5 21 21 H 1.08997 * 109.47251 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47111 * 299.99676 * 1 2 3 23 23 H 1.08993 * 109.47486 * 59.99594 * 1 2 3 24 24 H 1.08999 * 109.47010 * 59.99981 * 3 2 1 25 25 H 1.09004 * 109.47001 * 300.00856 * 3 2 1 26 26 H 1.09001 * 109.47285 * 300.37394 * 4 3 2 27 27 H 1.09001 * 109.46916 * 180.37717 * 4 3 2 28 28 H 0.97005 * 119.99796 * 179.97438 * 9 8 6 29 29 H 1.08996 * 109.46941 * 204.86669 * 14 5 4 30 30 H 1.09000 * 109.46987 * 324.87370 * 14 5 4 31 31 H 1.08997 * 108.89299 * 330.76218 * 17 15 14 32 32 H 1.09007 * 108.88766 * 89.31843 * 17 15 14 33 33 H 1.08993 * 110.34156 * 121.69887 * 18 17 15 34 34 H 1.09004 * 110.34176 * 243.84975 * 18 17 15 35 35 H 1.09000 * 111.12749 * 279.27231 * 20 15 14 36 36 H 1.08998 * 111.13298 * 43.45605 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9679 0.4657 -1.2016 6 6 4.2241 -0.8781 -1.1402 7 1 4.4496 -1.4267 -2.0427 8 6 4.1941 -1.5353 0.0822 9 7 3.2838 -1.2173 0.9781 10 14 5.4458 -2.8706 0.4558 11 1 6.8146 -2.2985 0.3894 12 1 5.2013 -3.4114 1.8170 13 1 5.3169 -3.9629 -0.5420 14 6 4.1260 1.1843 -2.4684 15 6 5.5163 1.8208 -2.5235 16 1 5.6764 2.4271 -1.6320 17 6 5.6290 2.7004 -3.7695 18 6 7.0663 2.7743 -4.3091 19 16 8.0379 1.6612 -3.2227 20 6 6.5955 0.7084 -2.5971 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.6887 1.8463 0.8900 25 1 1.6886 1.8464 -0.8899 26 1 3.8570 0.6377 0.8857 27 1 3.9788 2.1803 0.0061 28 1 3.2626 -1.6767 1.8322 29 1 4.0126 0.4869 -3.2984 30 1 3.3668 1.9630 -2.5416 31 1 4.9807 2.2959 -4.5468 32 1 5.2951 3.7080 -3.5215 33 1 7.1024 2.4235 -5.3404 34 1 7.4437 3.7948 -4.2433 35 1 6.7998 0.2932 -1.6102 36 1 6.3059 -0.0742 -3.2984 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453599918.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:18:45 Heat of formation + Delta-G solvation = -23.796923 kcal Electronic energy + Delta-G solvation = -16852.347024 eV Core-core repulsion = 14270.672012 eV Total energy + Delta-G solvation = -2581.675013 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.99945 -37.80745 -35.99074 -33.08930 -31.09205 -29.70686 -27.83659 -26.84518 -25.31146 -24.05743 -21.98947 -20.58189 -18.71120 -17.46468 -17.19660 -16.45071 -16.27245 -16.19367 -15.50020 -15.26083 -14.98834 -14.72361 -14.49968 -13.77689 -13.48391 -13.15046 -12.94247 -12.72291 -12.61015 -12.41315 -12.35704 -12.17284 -12.03143 -11.86666 -11.59779 -11.36364 -11.20546 -10.77926 -10.08774 -9.87029 -8.77041 -8.66239 -7.68182 -4.79933 1.03978 1.48603 1.51373 1.56397 1.60335 2.64672 3.27448 3.56317 3.68096 3.82103 3.99572 4.22360 4.25004 4.42347 4.53441 4.65280 4.70123 4.72698 4.77650 4.85679 4.89777 4.92181 4.95259 4.98860 5.02545 5.10421 5.25342 5.32017 5.49137 5.84225 5.90563 6.44538 7.03174 7.32988 8.09739 8.50847 9.29701 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.021378 B = 0.008659 C = 0.006515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.419211 B = 3232.785707 C = 4296.763602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.334 6.334 3 C 0.064 3.936 4 C 0.147 3.853 5 N -0.598 5.598 6 C -0.257 4.257 7 H 0.065 0.935 8 C -0.017 4.017 9 N -0.844 5.844 10 Si 0.891 3.109 11 H -0.295 1.295 12 H -0.303 1.303 13 H -0.289 1.289 14 C 0.166 3.834 15 C -0.100 4.100 16 H 0.065 0.935 17 C -0.118 4.118 18 C -0.047 4.047 19 S -0.383 6.383 20 C -0.019 4.019 21 H 0.069 0.931 22 H 0.032 0.968 23 H 0.031 0.969 24 H 0.026 0.974 25 H 0.021 0.979 26 H 0.078 0.922 27 H 0.044 0.956 28 H 0.238 0.762 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.079 0.921 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.255 9.702 -7.528 12.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.251 6.251 3 C -0.016 4.016 4 C 0.021 3.979 5 N -0.319 5.319 6 C -0.386 4.386 7 H 0.083 0.917 8 C -0.216 4.216 9 N -0.487 5.487 10 Si 0.721 3.279 11 H -0.223 1.223 12 H -0.230 1.230 13 H -0.216 1.216 14 C 0.038 3.962 15 C -0.124 4.124 16 H 0.084 0.916 17 C -0.157 4.157 18 C -0.194 4.194 19 S -0.157 6.157 20 C -0.167 4.167 21 H 0.088 0.912 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.044 0.956 25 H 0.039 0.961 26 H 0.096 0.904 27 H 0.062 0.938 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.119 0.881 34 H 0.129 0.871 35 H 0.097 0.903 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.999 9.385 -7.155 11.844 hybrid contribution -0.740 -0.917 0.405 1.246 sum 0.259 8.468 -6.751 10.833 Atomic orbital electron populations 1.22695 0.84789 1.01316 0.98549 1.88689 1.15968 1.25914 1.94499 1.22859 0.97582 0.84876 0.96276 1.21266 0.90453 0.94006 0.92138 1.44105 1.77547 1.04815 1.05470 1.18906 1.41383 0.85869 0.92437 0.91724 1.24993 0.99288 0.99042 0.98230 1.70631 1.27813 1.42543 1.07687 0.86456 0.83834 0.81276 0.76291 1.22263 1.22973 1.21613 1.20811 0.92972 0.94658 0.87729 1.22606 0.96835 0.94430 0.98495 0.91608 1.21943 0.95243 1.01489 0.97010 1.23968 0.95136 1.00556 0.99784 1.87823 1.21696 1.45907 1.60267 1.24130 0.91267 0.98702 1.02580 0.91244 0.94982 0.95099 0.95585 0.96050 0.90419 0.93821 0.95155 0.93527 0.92990 0.89872 0.88840 0.88112 0.87063 0.90256 0.90275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.89 11.01 113.37 1.25 2.13 16 2 O -0.33 -15.67 7.69 -148.98 -1.15 -16.81 16 3 C 0.06 2.62 6.26 71.98 0.45 3.07 16 4 C 0.15 6.49 5.59 86.38 0.48 6.97 16 5 N -0.60 -26.81 2.33 -702.01 -1.63 -28.44 16 6 C -0.26 -13.23 8.55 84.04 0.72 -12.52 16 7 H 0.06 3.38 7.99 -2.91 -0.02 3.36 16 8 C -0.02 -0.90 4.80 84.86 0.41 -0.49 16 9 N -0.84 -46.60 8.19 21.65 0.18 -46.42 16 10 Si 0.89 44.02 29.68 68.60 2.04 46.06 16 11 H -0.29 -14.73 7.11 99.48 0.71 -14.03 16 12 H -0.30 -15.24 7.11 99.48 0.71 -14.54 16 13 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 14 C 0.17 5.87 4.94 86.38 0.43 6.30 16 15 C -0.10 -3.10 2.76 -10.07 -0.03 -3.13 16 16 H 0.07 2.20 8.04 -2.39 -0.02 2.18 16 17 C -0.12 -2.63 5.85 30.81 0.18 -2.45 16 18 C -0.05 -1.02 7.38 72.22 0.53 -0.49 16 19 S -0.38 -12.16 23.22 -56.49 -1.31 -13.48 16 20 C -0.02 -0.67 6.00 72.72 0.44 -0.24 16 21 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 22 H 0.03 1.05 8.14 -2.39 -0.02 1.04 16 23 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.02 0.81 7.98 -2.39 -0.02 0.79 16 26 H 0.08 4.00 5.29 -2.39 -0.01 3.99 16 27 H 0.04 1.70 8.02 -2.39 -0.02 1.68 16 28 H 0.24 13.19 8.31 -92.70 -0.77 12.42 16 29 H 0.05 1.68 7.91 -2.39 -0.02 1.66 16 30 H 0.05 1.67 7.95 -2.39 -0.02 1.65 16 31 H 0.08 1.67 7.80 -2.39 -0.02 1.66 16 32 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.08 3.32 8.05 -2.39 -0.02 3.30 16 36 H 0.08 2.82 8.07 -2.39 -0.02 2.80 16 Total: -1.00 -59.53 297.97 4.00 -55.53 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: 1.03 Total: 4.40 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 4.86 Total: -0.83 kcal Atomic # 7 Polarization: -73.41 SS G_CDS: -1.46 Total: -74.86 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -1.15 Total: -16.81 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.04 Total: 46.06 kcal Atomic # 16 Polarization: -12.16 SS G_CDS: -1.31 Total: -13.48 kcal Total: -59.53 4.00 -55.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453599918.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.729 kcal (2) G-P(sol) polarization free energy of solvation -59.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds