Wall clock time and date at job start Thu Apr 9 2020 12:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.46900 * 110.99736 * 58.95813 * 12 2 1 14 14 C 1.46895 * 111.00186 * 295.00225 * 12 2 1 15 15 C 1.50703 * 109.46874 * 189.99595 * 14 12 2 16 16 C 1.38358 * 119.44965 * 94.72864 * 15 14 12 17 17 C 1.38349 * 119.30991 * 179.76862 * 16 15 14 18 18 C 1.40076 * 118.28184 * 0.49199 * 17 16 15 19 19 C 1.43200 * 120.56403 * 179.77107 * 18 17 16 20 20 N 8.85807 * 111.59473 * 109.49250 * 2 1 3 21 21 C 1.39579 * 118.86920 * 359.75349 * 18 17 16 22 22 N 1.31692 * 120.55676 * 359.97438 * 21 18 17 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 26 26 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.47292 * 59.99623 * 13 12 2 28 28 H 1.09002 * 109.47267 * 179.97438 * 13 12 2 29 29 H 1.09000 * 109.47210 * 300.00139 * 13 12 2 30 30 H 1.08999 * 109.47066 * 309.99575 * 14 12 2 31 31 H 1.09001 * 109.47511 * 70.00176 * 14 12 2 32 32 H 1.08000 * 120.34730 * 0.02562 * 16 15 14 33 33 H 1.07993 * 120.86049 * 180.24722 * 17 16 15 34 34 H 1.08003 * 119.72481 * 179.97438 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0196 -0.6924 1.1995 13 6 1.5283 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 6 2.3678 -0.5571 3.6006 16 6 3.5649 -0.0034 4.0187 17 6 4.2202 -0.5501 5.1076 18 6 3.6440 -1.6587 5.7410 19 6 4.2831 -2.2663 6.8692 20 7 4.7901 -2.7483 7.7643 21 6 2.4362 -2.1608 5.2539 22 7 1.8482 -1.6013 4.2168 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 0.7089 1.1612 -3.4844 27 1 1.8762 -2.6150 0.3648 28 1 1.9060 -2.5657 2.1436 29 1 0.4385 -2.0742 1.2639 30 1 1.9297 1.0871 2.3124 31 1 0.5722 -0.0344 2.5727 32 1 3.9812 0.8494 3.5031 33 1 5.1539 -0.1354 5.4577 34 1 1.9799 -3.0153 5.7315 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000555674273.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:18:57 Heat of formation + Delta-G solvation = 75.294154 kcal Electronic energy + Delta-G solvation = -16865.741355 eV Core-core repulsion = 14185.212054 eV Total energy + Delta-G solvation = -2680.529301 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.46468 -37.35404 -36.59136 -33.23386 -32.61925 -31.73761 -28.75262 -27.26803 -25.20134 -24.60914 -23.71159 -22.14505 -19.29842 -19.18054 -16.81679 -16.41623 -15.83454 -15.29860 -14.62308 -14.47035 -14.14572 -13.72749 -13.62099 -13.27667 -13.08990 -12.95312 -12.64040 -12.51772 -11.86725 -11.49878 -11.07793 -11.03364 -10.80894 -10.69834 -10.50807 -10.08093 -9.96508 -9.95937 -9.50265 -9.09835 -8.86766 -8.41729 -7.23673 -6.03895 -4.07597 0.49104 1.13734 2.43862 2.82090 3.29793 3.36720 3.40566 3.63344 3.75824 4.26309 4.40626 4.57773 4.65237 5.00227 5.17663 5.27932 5.32071 5.57169 5.69065 5.85731 6.05353 6.12299 6.29284 6.46223 6.49699 6.68505 6.82109 6.93720 7.07568 7.24581 7.42099 7.68865 7.79064 7.87384 8.05127 8.32766 8.52682 8.97991 9.57585 11.03188 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.042954 B = 0.004602 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.696114 B = 6082.298047 C = 6259.950445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.212 3.788 3 H 0.041 0.959 4 C -0.500 4.500 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.528 5.528 13 C 0.034 3.966 14 C 0.090 3.910 15 C 0.185 3.815 16 C -0.154 4.154 17 C -0.027 4.027 18 C -0.102 4.102 19 C 0.265 3.735 20 N -0.423 5.423 21 C 0.155 3.845 22 N -0.476 5.476 23 H 0.032 0.968 24 H 0.089 0.911 25 H 0.008 0.992 26 H 0.260 0.740 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.022 0.978 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.149 0.851 33 H 0.142 0.858 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.460 -0.957 12.275 12.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.106 3.894 3 H 0.059 0.941 4 C -0.538 4.538 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.252 5.252 13 C -0.114 4.114 14 C -0.038 4.038 15 C 0.047 3.953 16 C -0.175 4.175 17 C -0.055 4.055 18 C -0.108 4.108 19 C -0.050 4.050 20 N -0.099 5.099 21 C -0.007 4.007 22 N -0.185 5.185 23 H 0.051 0.949 24 H 0.107 0.893 25 H 0.027 0.973 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.040 0.960 30 H 0.105 0.895 31 H 0.070 0.930 32 H 0.167 0.833 33 H 0.160 0.840 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.890 -1.922 13.155 13.605 hybrid contribution -0.001 0.088 -0.875 0.879 sum 2.889 -1.834 12.280 12.748 Atomic orbital electron populations 1.22419 1.00685 0.99591 1.00594 1.19348 0.89910 0.94555 0.85605 0.94108 1.21095 1.30676 1.12511 0.89555 0.91906 1.24911 0.95209 0.95101 0.98981 1.69875 1.37007 1.23026 1.23457 0.86526 0.79259 0.79290 0.82510 1.20819 1.21304 1.19850 1.62466 1.59404 1.02389 1.00931 1.22274 0.97567 0.90528 1.01062 1.21099 0.97301 0.97680 0.87754 1.21788 0.91207 0.88939 0.93358 1.21988 0.95920 1.02629 0.96941 1.21613 0.98648 0.92111 0.93107 1.16985 0.98416 0.99968 0.95414 1.25479 0.93405 0.93423 0.92734 1.81253 1.08679 1.08877 1.11082 1.22918 0.89583 0.97146 0.91039 1.67720 1.33896 1.09545 1.07293 0.94905 0.89286 0.97280 0.92975 0.91182 0.93206 0.95976 0.89452 0.93005 0.83346 0.84037 0.82103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.00 8.28 37.16 0.31 -3.69 16 2 C 0.21 5.00 2.34 -68.87 -0.16 4.84 16 3 H 0.04 1.04 8.03 -51.93 -0.42 0.63 16 4 C -0.50 -13.11 7.94 -34.44 -0.27 -13.39 16 5 H 0.06 1.66 6.75 -52.49 -0.35 1.31 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 7 N -0.89 -24.61 11.32 55.43 0.63 -23.98 16 8 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 12 N -0.53 -10.55 4.73 -237.74 -1.13 -11.67 16 13 C 0.03 0.66 8.64 60.06 0.52 1.18 16 14 C 0.09 1.47 4.71 -4.98 -0.02 1.45 16 15 C 0.18 2.56 5.71 -82.51 -0.47 2.09 16 16 C -0.15 -1.73 9.70 -39.50 -0.38 -2.11 16 17 C -0.03 -0.26 9.91 -38.85 -0.38 -0.64 16 18 C -0.10 -1.04 5.74 -106.78 -0.61 -1.66 16 19 C 0.27 2.94 15.37 -22.47 -0.35 2.60 16 20 N -0.42 -5.55 18.54 41.84 0.78 -4.77 16 21 C 0.15 1.69 10.92 -17.11 -0.19 1.50 16 22 N -0.48 -6.51 8.72 -9.12 -0.08 -6.59 16 23 H 0.03 0.74 6.38 -51.93 -0.33 0.41 16 24 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 25 H 0.01 0.17 6.75 -51.93 -0.35 -0.18 16 26 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 27 H 0.07 1.45 6.53 -51.93 -0.34 1.12 16 28 H 0.05 0.88 6.12 -51.93 -0.32 0.56 16 29 H 0.02 0.43 6.28 -51.93 -0.33 0.10 16 30 H 0.09 1.32 7.90 -51.93 -0.41 0.91 16 31 H 0.05 0.88 6.94 -51.93 -0.36 0.52 16 32 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.16 1.36 8.06 -52.48 -0.42 0.93 16 LS Contribution 288.96 15.07 4.35 4.35 Total: -1.00 -28.62 288.96 -6.50 -35.12 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -3.93 Total: -1.88 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -2.11 Total: -6.35 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: 0.20 Total: -47.01 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.62 -6.50 -35.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000555674273.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.414 kcal (2) G-P(sol) polarization free energy of solvation -28.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds