Wall clock time and date at job start Thu Apr 9 2020 12:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.46900 * 110.99736 * 58.95813 * 12 2 1 14 14 C 1.46895 * 111.00186 * 295.00225 * 12 2 1 15 15 C 1.50703 * 109.46874 * 189.99595 * 14 12 2 16 16 C 1.38358 * 119.44965 * 94.72864 * 15 14 12 17 17 C 1.38349 * 119.30991 * 179.76862 * 16 15 14 18 18 C 1.40076 * 118.28184 * 0.49199 * 17 16 15 19 19 C 1.43200 * 120.56403 * 179.77107 * 18 17 16 20 20 N 8.85807 * 111.59473 * 109.49250 * 2 1 3 21 21 C 1.39579 * 118.86920 * 359.75349 * 18 17 16 22 22 N 1.31692 * 120.55676 * 359.97438 * 21 18 17 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 26 26 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.47292 * 59.99623 * 13 12 2 28 28 H 1.09002 * 109.47267 * 179.97438 * 13 12 2 29 29 H 1.09000 * 109.47210 * 300.00139 * 13 12 2 30 30 H 1.08999 * 109.47066 * 309.99575 * 14 12 2 31 31 H 1.09001 * 109.47511 * 70.00176 * 14 12 2 32 32 H 1.08000 * 120.34730 * 0.02562 * 16 15 14 33 33 H 1.07993 * 120.86049 * 180.24722 * 17 16 15 34 34 H 1.08003 * 119.72481 * 179.97438 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0196 -0.6924 1.1995 13 6 1.5283 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 6 2.3678 -0.5571 3.6006 16 6 3.5649 -0.0034 4.0187 17 6 4.2202 -0.5501 5.1076 18 6 3.6440 -1.6587 5.7410 19 6 4.2831 -2.2663 6.8692 20 7 4.7901 -2.7483 7.7643 21 6 2.4362 -2.1608 5.2539 22 7 1.8482 -1.6013 4.2168 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 0.7089 1.1612 -3.4844 27 1 1.8762 -2.6150 0.3648 28 1 1.9060 -2.5657 2.1436 29 1 0.4385 -2.0742 1.2639 30 1 1.9297 1.0871 2.3124 31 1 0.5722 -0.0344 2.5727 32 1 3.9812 0.8494 3.5031 33 1 5.1539 -0.1354 5.4577 34 1 1.9799 -3.0153 5.7315 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000555674273.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:18:57 Heat of formation + Delta-G solvation = 57.701276 kcal Electronic energy + Delta-G solvation = -16866.504239 eV Core-core repulsion = 14185.212054 eV Total energy + Delta-G solvation = -2681.292186 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.41133 -38.84289 -37.65327 -34.90755 -33.62157 -32.97576 -30.45276 -28.62583 -27.16588 -25.98332 -24.64847 -23.42509 -21.00744 -20.06427 -18.22423 -17.72873 -17.24636 -16.72500 -16.23419 -15.38363 -15.28464 -15.22216 -14.93733 -14.46196 -14.20484 -14.05943 -13.96026 -13.77698 -13.38883 -13.00520 -12.75288 -12.64400 -12.56872 -12.43031 -12.20409 -11.95832 -11.72566 -10.87978 -10.85317 -10.48628 -10.43687 -9.99611 -8.84811 -8.06526 -6.16248 -0.41852 0.31030 1.45573 1.47376 1.55175 1.56988 1.90150 2.46861 2.72306 2.84432 3.23438 3.30887 3.66483 3.76603 3.82478 4.14865 4.33382 4.54262 4.67600 4.72463 4.81337 4.86732 4.94285 4.97067 5.02732 5.12516 5.22679 5.28011 5.58427 5.60190 5.76201 5.84827 6.21719 6.36767 6.48809 6.74271 6.94969 6.97654 7.52657 8.99410 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.042954 B = 0.004602 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.696114 B = 6082.298047 C = 6259.950445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.216 3.784 3 H 0.018 0.982 4 C -0.513 4.513 5 H 0.055 0.945 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.954 3.046 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.270 1.270 12 N -0.533 5.533 13 C 0.045 3.955 14 C 0.093 3.907 15 C 0.164 3.836 16 C -0.153 4.153 17 C -0.012 4.012 18 C -0.094 4.094 19 C 0.290 3.710 20 N -0.456 5.456 21 C 0.155 3.845 22 N -0.501 5.501 23 H 0.028 0.972 24 H 0.061 0.939 25 H 0.029 0.971 26 H 0.261 0.739 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.015 0.985 30 H 0.095 0.905 31 H 0.042 0.958 32 H 0.163 0.837 33 H 0.174 0.826 34 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.494 -1.319 13.346 13.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.109 3.891 3 H 0.036 0.964 4 C -0.552 4.552 5 H 0.074 0.926 6 C -0.185 4.185 7 N -0.559 5.559 8 Si 0.781 3.219 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.195 1.195 12 N -0.257 5.257 13 C -0.103 4.103 14 C -0.035 4.035 15 C 0.027 3.973 16 C -0.173 4.173 17 C -0.039 4.039 18 C -0.100 4.100 19 C -0.026 4.026 20 N -0.132 5.132 21 C -0.006 4.006 22 N -0.210 5.210 23 H 0.047 0.953 24 H 0.080 0.920 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.033 0.967 30 H 0.114 0.886 31 H 0.061 0.939 32 H 0.181 0.819 33 H 0.191 0.809 34 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 3.926 -2.289 14.241 14.948 hybrid contribution -0.309 0.200 -1.102 1.162 sum 3.618 -2.089 13.139 13.787 Atomic orbital electron populations 1.22222 1.00437 0.99086 1.00191 1.19099 0.89935 0.93370 0.86672 0.96366 1.21373 1.30495 1.12370 0.90915 0.92648 1.25610 0.95471 0.95776 1.01600 1.69992 1.37891 1.24116 1.23934 0.85612 0.78776 0.78246 0.79311 1.20525 1.21037 1.19470 1.62308 1.59462 1.02635 1.01294 1.22153 0.97013 0.90218 1.00944 1.21066 0.97243 0.98013 0.87191 1.21451 0.92402 0.90118 0.93320 1.22101 0.94912 1.02920 0.97369 1.21924 0.99197 0.91065 0.91731 1.16983 0.98093 0.99985 0.94907 1.25387 0.92501 0.92513 0.92181 1.81296 1.09829 1.09945 1.12130 1.23236 0.89728 0.97407 0.90265 1.67625 1.34861 1.10026 1.08473 0.95329 0.91986 0.95254 0.93025 0.93139 0.91353 0.96655 0.88646 0.93947 0.81920 0.80860 0.79920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.46 8.28 71.98 0.60 -6.86 16 2 C 0.22 10.33 2.34 44.17 0.10 10.44 16 3 H 0.02 0.96 8.03 -2.39 -0.02 0.94 16 4 C -0.51 -27.20 7.94 25.60 0.20 -27.00 16 5 H 0.06 2.96 6.75 -2.91 -0.02 2.94 16 6 C 0.01 0.75 5.30 84.66 0.45 1.20 16 7 N -0.92 -51.23 11.32 21.45 0.24 -50.99 16 8 Si 0.95 42.75 29.54 68.60 2.03 44.78 16 9 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 12 N -0.53 -21.20 4.73 -906.06 -4.29 -25.48 16 13 C 0.05 1.73 8.64 127.69 1.10 2.84 16 14 C 0.09 2.97 4.71 85.56 0.40 3.38 16 15 C 0.16 4.28 5.71 42.58 0.24 4.52 16 16 C -0.15 -3.02 9.70 22.32 0.22 -2.80 16 17 C -0.01 -0.18 9.91 22.74 0.23 0.05 16 18 C -0.09 -1.63 5.74 -21.26 -0.12 -1.75 16 19 C 0.29 5.62 15.37 88.33 1.36 6.98 16 20 N -0.46 -10.99 18.54 19.00 0.35 -10.64 16 21 C 0.15 3.00 10.92 85.04 0.93 3.93 16 22 N -0.50 -12.80 8.72 -182.77 -1.59 -14.39 16 23 H 0.03 1.31 6.38 -2.39 -0.02 1.29 16 24 H 0.06 3.24 6.07 -2.39 -0.01 3.22 16 25 H 0.03 1.20 6.75 -2.38 -0.02 1.18 16 26 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 27 H 0.05 2.10 6.53 -2.39 -0.02 2.09 16 28 H 0.07 2.35 6.12 -2.39 -0.01 2.34 16 29 H 0.01 0.59 6.28 -2.39 -0.01 0.58 16 30 H 0.10 2.82 7.90 -2.39 -0.02 2.80 16 31 H 0.04 1.42 6.94 -2.39 -0.02 1.40 16 32 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16 33 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 34 H 0.18 2.59 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -61.24 288.96 3.56 -57.67 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: 1.11 Total: 4.14 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: 5.71 Total: -5.09 kcal Atomic # 7 Polarization: -96.22 SS G_CDS: -5.29 Total: -101.51 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -61.24 3.56 -57.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000555674273.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.376 kcal (2) G-P(sol) polarization free energy of solvation -61.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds