Wall clock time and date at job start Thu Apr 9 2020 12:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81397 * 102.99942 * 2 1 4 4 C 1.53001 * 109.47276 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47161 * 305.00091 * 4 3 2 6 6 O 1.42899 * 109.46809 * 65.00324 * 4 3 2 7 7 C 1.52999 * 109.47122 * 184.99748 * 4 3 2 8 8 N 1.46901 * 109.47027 * 179.97438 * 7 4 3 9 9 C 1.46910 * 110.99943 * 180.02562 * 8 7 4 10 10 C 1.52996 * 109.46974 * 185.35442 * 9 8 7 11 11 C 1.50703 * 115.55038 * 65.04948 * 10 9 8 12 12 H 1.07999 * 120.00332 * 265.44489 * 11 10 9 13 13 C 1.37876 * 120.00075 * 85.44528 * 11 10 9 14 14 N 1.31518 * 119.99927 * 353.59589 * 13 11 10 15 15 Si 1.86801 * 120.00396 * 173.59338 * 13 11 10 16 16 H 1.48495 * 109.47007 * 89.99827 * 15 13 11 17 17 H 1.48499 * 109.47062 * 210.00014 * 15 13 11 18 18 H 1.48505 * 109.46814 * 330.00033 * 15 13 11 19 19 C 1.53006 * 117.50100 * 279.38024 * 10 9 8 20 20 C 1.53003 * 117.49902 * 210.72152 * 10 9 8 21 21 H 1.08996 * 109.47124 * 60.00112 * 1 2 3 22 22 H 1.08996 * 109.47329 * 299.99760 * 1 2 3 23 23 H 1.09002 * 109.46647 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47672 * 299.99984 * 3 2 1 25 25 H 1.09002 * 109.47364 * 60.00076 * 3 2 1 26 26 H 0.96703 * 114.00341 * 60.00312 * 6 4 3 27 27 H 1.08993 * 109.47619 * 300.00654 * 7 4 3 28 28 H 1.09004 * 109.47194 * 60.00816 * 7 4 3 29 29 H 1.00893 * 111.00606 * 303.95737 * 8 7 4 30 30 H 1.09000 * 109.46999 * 305.35606 * 9 8 7 31 31 H 1.08992 * 109.46643 * 65.35804 * 9 8 7 32 32 H 0.96996 * 119.99961 * 180.02562 * 14 13 11 33 33 H 1.09000 * 117.49330 * 0.02562 * 19 10 9 34 34 H 1.09002 * 117.49769 * 145.01990 * 19 10 9 35 35 H 1.09003 * 117.49879 * 214.98264 * 20 10 9 36 36 H 1.09000 * 117.49434 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7422 1.9400 0.0006 5 1 4.1693 1.3953 0.8427 6 8 4.2802 1.4279 -1.2202 7 6 4.0869 3.4253 0.1263 8 7 5.5466 3.5909 0.1275 9 6 5.9156 5.0078 0.2477 10 6 7.4326 5.1530 0.1115 11 6 8.0029 4.7824 -1.2334 12 1 8.3856 3.7866 -1.4019 13 6 8.0361 5.7146 -2.2487 14 7 7.4581 6.8847 -2.0862 15 14 8.9022 5.3158 -3.8550 16 1 7.9376 4.6916 -4.7957 17 1 9.4380 6.5655 -4.4520 18 1 10.0197 4.3732 -3.5940 19 6 8.2846 4.8542 1.3467 20 6 8.1038 6.2983 0.8722 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8031 2.2372 -0.8899 25 1 1.8031 2.2371 0.8900 26 1 3.9436 1.8671 -2.0132 27 1 3.6598 3.9700 -0.7156 28 1 3.6767 3.8160 1.0575 29 1 5.9720 3.0434 0.8605 30 1 5.4238 5.5793 -0.5394 31 1 5.6006 5.3839 1.2209 32 1 7.4811 7.5404 -2.8006 33 1 7.7644 4.5539 2.2563 34 1 9.2578 4.3901 1.1866 35 1 8.9580 6.7836 0.4001 36 1 7.4645 6.9486 1.4693 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563003489.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:18:59 Heat of formation + Delta-G solvation = -50.568280 kcal Electronic energy + Delta-G solvation = -15819.430977 eV Core-core repulsion = 13236.595071 eV Total energy + Delta-G solvation = -2582.835906 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.119 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.24914 -38.29185 -35.29644 -33.86757 -32.07509 -29.77132 -28.18508 -27.18777 -24.58111 -22.92827 -22.54177 -20.84477 -18.23626 -17.76316 -17.19589 -16.59978 -16.44487 -16.11537 -15.57151 -15.28657 -15.09564 -14.72386 -14.43475 -14.27759 -13.61734 -13.38475 -13.19668 -12.96697 -12.84492 -12.77739 -12.53024 -12.31764 -12.02178 -12.00603 -11.42268 -10.89320 -10.85559 -10.71519 -10.33821 -9.89928 -9.00316 -8.65260 -8.02036 -6.07355 0.70349 1.43900 1.45483 1.54853 1.70074 2.49870 3.15346 3.28141 3.57341 3.64005 3.89586 4.06060 4.14677 4.30924 4.34140 4.36537 4.45616 4.54847 4.58986 4.70368 4.75570 4.80570 4.88739 5.00476 5.07829 5.09595 5.29388 5.65416 5.76746 5.90049 6.35883 6.52830 6.72054 6.92758 6.95494 7.57649 9.06954 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.028305 B = 0.004977 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.986787 B = 5624.755744 C = 6200.705739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.300 6.300 3 C -0.105 4.105 4 C 0.137 3.863 5 H 0.094 0.906 6 O -0.557 6.557 7 C 0.039 3.961 8 N -0.673 5.673 9 C 0.124 3.876 10 C 0.025 3.975 11 C -0.478 4.478 12 H 0.044 0.956 13 C 0.024 3.976 14 N -0.912 5.912 15 Si 0.943 3.057 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.190 4.190 20 C -0.166 4.166 21 H 0.084 0.916 22 H 0.086 0.914 23 H 0.110 0.890 24 H 0.094 0.906 25 H 0.104 0.896 26 H 0.381 0.619 27 H 0.068 0.932 28 H 0.044 0.956 29 H 0.336 0.664 30 H 0.043 0.957 31 H 0.008 0.992 32 H 0.256 0.744 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.024 -8.551 5.564 17.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 S -0.074 6.074 3 C -0.254 4.254 4 C 0.076 3.924 5 H 0.112 0.888 6 O -0.363 6.363 7 C -0.093 4.093 8 N -0.304 5.304 9 C -0.006 4.006 10 C 0.025 3.975 11 C -0.516 4.516 12 H 0.062 0.938 13 C -0.175 4.175 14 N -0.551 5.551 15 Si 0.770 3.230 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.227 4.227 20 C -0.204 4.204 21 H 0.103 0.897 22 H 0.105 0.895 23 H 0.128 0.872 24 H 0.113 0.887 25 H 0.123 0.877 26 H 0.229 0.771 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.154 0.846 30 H 0.062 0.938 31 H 0.026 0.974 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.037 -9.657 5.184 17.032 hybrid contribution -0.749 1.794 -0.409 1.986 sum -13.787 -7.863 4.775 16.574 Atomic orbital electron populations 1.23444 0.91666 1.07399 1.05771 1.87393 1.09897 1.12004 1.98150 1.24112 1.00077 0.94409 1.06779 1.21477 0.89584 0.92790 0.88537 0.88767 1.86610 1.70939 1.63001 1.15755 1.22604 0.89367 0.96287 1.01019 1.60013 1.07676 1.09104 1.53571 1.21194 0.95591 0.87755 0.96013 1.18940 0.90066 0.98014 0.90522 1.20521 1.38536 0.96776 0.95806 0.93789 1.25530 0.96015 0.95163 1.00804 1.70103 1.44505 1.06926 1.33614 0.85802 0.79112 0.77238 0.80887 1.20547 1.21169 1.19877 1.22977 1.01909 0.98720 0.99094 1.22442 1.02909 0.90751 1.04278 0.89716 0.89458 0.87164 0.88711 0.87713 0.77083 0.91392 0.93762 0.84620 0.93837 0.97404 0.93544 0.89215 0.90846 0.92527 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 10.76 113.37 1.22 -0.30 16 2 S -0.30 -6.53 22.16 -56.49 -1.25 -7.78 16 3 C -0.10 -2.04 5.60 71.98 0.40 -1.64 16 4 C 0.14 3.48 3.17 30.59 0.10 3.58 16 5 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 6 O -0.56 -17.08 12.96 -148.98 -1.93 -19.01 16 7 C 0.04 1.10 5.34 86.30 0.46 1.56 16 8 N -0.67 -25.26 6.25 -513.88 -3.21 -28.47 16 9 C 0.12 5.37 5.51 86.30 0.48 5.85 16 10 C 0.03 1.23 1.55 -52.93 -0.08 1.15 16 11 C -0.48 -26.51 8.74 25.60 0.22 -26.29 16 12 H 0.04 2.52 7.82 -2.91 -0.02 2.50 16 13 C 0.02 1.32 5.39 84.65 0.46 1.77 16 14 N -0.91 -52.44 12.92 21.45 0.28 -52.16 16 15 Si 0.94 44.76 29.54 68.60 2.03 46.78 16 16 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 17 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 18 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 19 C -0.19 -8.03 9.96 30.62 0.30 -7.72 16 20 C -0.17 -7.77 9.41 30.62 0.29 -7.48 16 21 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 25 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.38 9.87 9.05 -74.06 -0.67 9.20 16 27 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.34 11.97 8.79 -89.70 -0.79 11.18 16 30 H 0.04 2.15 8.13 -2.39 -0.02 2.13 16 31 H 0.01 0.32 8.09 -2.39 -0.02 0.30 16 32 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 33 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 34 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 35 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 36 H 0.07 3.16 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -63.59 318.45 -0.64 -64.23 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: -0.40 Total: 25.92 kcal Atomic # 6 Polarization: -33.37 SS G_CDS: 3.85 Total: -29.52 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: -2.93 Total: -80.63 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -1.93 Total: -19.01 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: -6.53 SS G_CDS: -1.25 Total: -7.78 kcal Total: -63.59 -0.64 -64.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563003489.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.664 kcal (2) G-P(sol) polarization free energy of solvation -63.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds