Wall clock time and date at job start Thu Apr 9 2020 12:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30231 * 126.09886 * 2 1 4 4 N 1.39867 * 110.09391 * 179.97438 * 3 2 1 5 5 C 1.46494 * 125.46203 * 180.02562 * 4 3 2 6 6 C 1.37070 * 109.06490 * 359.97438 * 4 3 2 7 7 C 1.39203 * 133.73712 * 180.27801 * 6 4 3 8 8 C 1.38251 * 119.67868 * 180.17712 * 7 6 4 9 9 N 1.39666 * 119.75006 * 179.76696 * 8 7 6 10 10 C 1.46499 * 119.99978 * 179.45000 * 9 8 7 11 11 C 1.50703 * 109.47138 * 180.28206 * 10 9 8 12 12 H 1.08001 * 120.00037 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99824 * 180.02562 * 11 10 9 14 14 N 1.31522 * 119.99572 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00297 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47136 * 89.99858 * 15 13 11 17 17 H 1.48503 * 109.47098 * 209.99924 * 15 13 11 18 18 H 1.48504 * 109.46915 * 329.99778 * 15 13 11 19 19 C 1.39638 * 120.50220 * 359.49708 * 8 7 6 20 20 C 1.36291 * 120.55862 * 0.27377 * 19 8 7 21 21 C 1.39996 * 119.88602 * 359.97438 * 20 19 8 22 22 H 1.09000 * 109.47031 * 270.04294 * 1 2 3 23 23 H 1.08997 * 109.46733 * 30.04631 * 1 2 3 24 24 H 1.08996 * 109.46893 * 150.04010 * 1 2 3 25 25 H 1.09005 * 109.47407 * 89.97383 * 5 4 3 26 26 H 1.09003 * 109.47175 * 209.96932 * 5 4 3 27 27 H 1.08997 * 109.47500 * 329.97845 * 5 4 3 28 28 H 1.07997 * 120.15848 * 359.92859 * 7 6 4 29 29 H 0.97001 * 120.00171 * 359.73431 * 9 8 7 30 30 H 1.09009 * 109.47454 * 300.27781 * 10 9 8 31 31 H 1.08998 * 109.47492 * 60.28075 * 10 9 8 32 32 H 0.97001 * 119.99511 * 179.97438 * 14 13 11 33 33 H 1.08001 * 119.71888 * 180.25383 * 19 8 7 34 34 H 1.08002 * 120.05462 * 180.02562 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2744 1.0523 0.0000 4 7 3.6188 0.6666 0.0006 5 6 4.7648 1.5792 0.0013 6 6 3.6920 -0.7021 0.0016 7 6 4.7477 -1.6094 0.0073 8 6 4.4840 -2.9666 0.0029 9 7 5.5421 -3.8782 0.0037 10 6 5.2689 -5.3175 0.0112 11 6 6.5711 -6.0759 0.0175 12 1 7.5085 -5.5395 0.0157 13 6 6.5658 -7.4547 0.0246 14 7 7.7023 -8.1166 0.0296 15 14 4.9445 -8.3825 0.0269 16 1 4.5169 -8.6355 -1.3725 17 1 5.1161 -9.6772 0.7339 18 1 3.9117 -7.5725 0.7214 19 6 3.1677 -3.4328 0.0032 20 6 2.1227 -2.5579 0.0023 21 6 2.3670 -1.1794 0.0016 22 1 -0.3633 0.0008 1.0277 23 1 -0.3633 0.8896 -0.5146 24 1 -0.3633 -0.8903 -0.5132 25 1 5.0483 1.8058 1.0292 26 1 5.6039 1.1093 -0.5117 27 1 4.4950 2.5017 -0.5128 28 1 5.7678 -1.2549 0.0112 29 1 6.4578 -3.5584 0.0035 30 1 4.6948 -5.5738 0.9017 31 1 4.6978 -5.5836 -0.8783 32 1 7.6986 -9.0866 0.0349 33 1 2.9762 -4.4957 0.0038 34 1 1.1079 -2.9274 0.0030 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568502703.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:19:10 Heat of formation + Delta-G solvation = 82.863583 kcal Electronic energy + Delta-G solvation = -16738.874380 eV Core-core repulsion = 14058.673313 eV Total energy + Delta-G solvation = -2680.201066 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.87942 -37.74430 -34.51754 -33.86874 -32.47262 -30.12409 -29.45006 -28.96350 -26.57927 -25.18500 -22.63141 -22.18226 -20.61068 -19.29993 -17.48316 -16.73811 -16.36867 -15.59975 -15.36396 -14.46181 -14.08277 -13.88443 -13.57521 -13.48266 -13.25204 -13.19846 -12.67772 -12.59844 -12.37137 -12.28828 -11.78316 -11.40715 -10.92246 -10.81389 -10.74443 -10.36882 -10.03624 -9.64044 -9.53959 -9.24878 -8.74135 -7.57667 -6.77620 -6.27208 -4.29792 1.43919 2.01981 2.62751 2.78133 3.18456 3.26151 3.27414 4.20517 4.24320 4.26301 4.58542 4.82266 4.98736 5.07157 5.19570 5.24496 5.43796 5.53820 5.56768 5.70849 5.76656 5.78481 5.85807 5.95507 6.37171 6.53304 6.62747 6.78519 6.83471 6.92705 7.11235 7.28425 7.38553 7.85218 7.95807 8.31681 8.48558 8.74809 9.31443 10.85184 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.037346 B = 0.004998 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.569567 B = 5600.879383 C = 6324.687540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.106 3.894 3 N -0.282 5.282 4 N -0.422 5.422 5 C 0.117 3.883 6 C 0.184 3.816 7 C -0.262 4.262 8 C 0.280 3.720 9 N -0.713 5.713 10 C 0.221 3.779 11 C -0.543 4.543 12 H 0.079 0.921 13 C 0.077 3.923 14 N -0.891 5.891 15 Si 0.879 3.121 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.262 1.262 19 C -0.217 4.217 20 C 0.001 3.999 21 C -0.244 4.244 22 H 0.078 0.922 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.117 0.883 29 H 0.399 0.601 30 H 0.021 0.979 31 H 0.017 0.983 32 H 0.268 0.732 33 H 0.127 0.873 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.126 14.169 -0.111 18.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.071 4.071 3 N -0.096 5.096 4 N -0.211 5.211 5 C -0.025 4.025 6 C 0.069 3.931 7 C -0.292 4.292 8 C 0.166 3.834 9 N -0.335 5.335 10 C 0.098 3.902 11 C -0.581 4.581 12 H 0.097 0.903 13 C -0.127 4.127 14 N -0.528 5.528 15 Si 0.705 3.295 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.187 1.187 19 C -0.240 4.240 20 C -0.021 4.021 21 C -0.254 4.254 22 H 0.096 0.904 23 H 0.091 0.909 24 H 0.097 0.903 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.135 0.865 29 H 0.233 0.767 30 H 0.039 0.961 31 H 0.034 0.966 32 H 0.078 0.922 33 H 0.145 0.855 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.873 15.106 -0.113 18.613 hybrid contribution -0.044 -1.304 0.008 1.304 sum -10.917 13.803 -0.105 17.598 Atomic orbital electron populations 1.20173 0.86431 1.03307 1.02987 1.23360 0.96073 0.89284 0.98393 1.76398 0.87223 1.23606 1.22338 1.47867 1.03660 1.02708 1.66845 1.21592 0.85218 0.93285 1.02377 1.18336 0.95043 0.83740 0.95957 1.19039 0.96623 0.90042 1.23483 1.17707 0.88786 0.88495 0.88371 1.45298 1.05846 1.05858 1.76449 1.19564 0.98172 0.76608 0.95866 1.21051 0.92038 0.91730 1.53262 0.90329 1.24824 0.96666 0.97303 0.93927 1.69884 1.25678 1.08038 1.49242 0.86802 0.84038 0.79736 0.78929 1.19796 1.20819 1.18692 1.20353 0.90855 1.00139 1.12677 1.19979 0.98423 0.90093 0.93569 1.19418 0.91556 0.93793 1.20600 0.90378 0.90872 0.90258 0.91926 0.90087 0.90142 0.86532 0.76684 0.96119 0.96570 0.92198 0.85533 0.86055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.48 36.01 0.38 -0.31 16 2 C 0.11 1.55 7.43 -80.18 -0.60 0.95 16 3 N -0.28 -4.47 12.40 34.85 0.43 -4.03 16 4 N -0.42 -6.55 4.05 -65.48 -0.27 -6.82 16 5 C 0.12 1.29 11.40 59.84 0.68 1.97 16 6 C 0.18 3.11 6.86 -84.18 -0.58 2.53 16 7 C -0.26 -4.44 9.84 -39.22 -0.39 -4.83 16 8 C 0.28 5.13 6.64 -83.76 -0.56 4.58 16 9 N -0.71 -14.22 5.72 -59.79 -0.34 -14.57 16 10 C 0.22 5.03 3.72 -5.19 -0.02 5.01 16 11 C -0.54 -14.56 9.83 -34.44 -0.34 -14.90 16 12 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 13 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 14 N -0.89 -26.08 13.96 55.43 0.77 -25.31 16 15 Si 0.88 20.27 27.47 -169.99 -4.67 15.60 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 18 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 19 C -0.22 -3.76 9.23 -39.76 -0.37 -4.13 16 20 C 0.00 0.01 10.05 -39.62 -0.40 -0.39 16 21 C -0.24 -3.97 6.33 -105.17 -0.67 -4.63 16 22 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 0.78 8.13 -51.93 -0.42 0.36 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 29 H 0.40 7.59 8.32 -40.82 -0.34 7.25 16 30 H 0.02 0.48 6.99 -51.92 -0.36 0.12 16 31 H 0.02 0.37 7.36 -51.93 -0.38 -0.01 16 32 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.13 2.18 6.68 -52.49 -0.35 1.83 16 34 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 292.08 15.07 4.40 4.40 Total: -1.00 -31.14 292.08 -7.01 -38.15 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -4.40 Total: 4.71 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -2.94 Total: -12.14 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: 0.60 Total: -50.73 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.67 Total: 15.60 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.14 -7.01 -38.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568502703.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.014 kcal (2) G-P(sol) polarization free energy of solvation -31.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds