Wall clock time and date at job start Thu Apr 9 2020 12:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30231 * 126.09886 * 2 1 4 4 N 1.39867 * 110.09391 * 179.97438 * 3 2 1 5 5 C 1.46494 * 125.46203 * 180.02562 * 4 3 2 6 6 C 1.37070 * 109.06490 * 359.97438 * 4 3 2 7 7 C 1.39203 * 133.73712 * 180.27801 * 6 4 3 8 8 C 1.38251 * 119.67868 * 180.17712 * 7 6 4 9 9 N 1.39666 * 119.75006 * 179.76696 * 8 7 6 10 10 C 1.46499 * 119.99978 * 179.45000 * 9 8 7 11 11 C 1.50703 * 109.47138 * 180.28206 * 10 9 8 12 12 H 1.08001 * 120.00037 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99824 * 180.02562 * 11 10 9 14 14 N 1.31522 * 119.99572 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00297 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47136 * 89.99858 * 15 13 11 17 17 H 1.48503 * 109.47098 * 209.99924 * 15 13 11 18 18 H 1.48504 * 109.46915 * 329.99778 * 15 13 11 19 19 C 1.39638 * 120.50220 * 359.49708 * 8 7 6 20 20 C 1.36291 * 120.55862 * 0.27377 * 19 8 7 21 21 C 1.39996 * 119.88602 * 359.97438 * 20 19 8 22 22 H 1.09000 * 109.47031 * 270.04294 * 1 2 3 23 23 H 1.08997 * 109.46733 * 30.04631 * 1 2 3 24 24 H 1.08996 * 109.46893 * 150.04010 * 1 2 3 25 25 H 1.09005 * 109.47407 * 89.97383 * 5 4 3 26 26 H 1.09003 * 109.47175 * 209.96932 * 5 4 3 27 27 H 1.08997 * 109.47500 * 329.97845 * 5 4 3 28 28 H 1.07997 * 120.15848 * 359.92859 * 7 6 4 29 29 H 0.97001 * 120.00171 * 359.73431 * 9 8 7 30 30 H 1.09009 * 109.47454 * 300.27781 * 10 9 8 31 31 H 1.08998 * 109.47492 * 60.28075 * 10 9 8 32 32 H 0.97001 * 119.99511 * 179.97438 * 14 13 11 33 33 H 1.08001 * 119.71888 * 180.25383 * 19 8 7 34 34 H 1.08002 * 120.05462 * 180.02562 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2744 1.0523 0.0000 4 7 3.6188 0.6666 0.0006 5 6 4.7648 1.5792 0.0013 6 6 3.6920 -0.7021 0.0016 7 6 4.7477 -1.6094 0.0073 8 6 4.4840 -2.9666 0.0029 9 7 5.5421 -3.8782 0.0037 10 6 5.2689 -5.3175 0.0112 11 6 6.5711 -6.0759 0.0175 12 1 7.5085 -5.5395 0.0157 13 6 6.5658 -7.4547 0.0246 14 7 7.7023 -8.1166 0.0296 15 14 4.9445 -8.3825 0.0269 16 1 4.5169 -8.6355 -1.3725 17 1 5.1161 -9.6772 0.7339 18 1 3.9117 -7.5725 0.7214 19 6 3.1677 -3.4328 0.0032 20 6 2.1227 -2.5579 0.0023 21 6 2.3670 -1.1794 0.0016 22 1 -0.3633 0.0008 1.0277 23 1 -0.3633 0.8896 -0.5146 24 1 -0.3633 -0.8903 -0.5132 25 1 5.0483 1.8058 1.0292 26 1 5.6039 1.1093 -0.5117 27 1 4.4950 2.5017 -0.5128 28 1 5.7678 -1.2549 0.0112 29 1 6.4578 -3.5584 0.0035 30 1 4.6948 -5.5738 0.9017 31 1 4.6978 -5.5836 -0.8783 32 1 7.6986 -9.0866 0.0349 33 1 2.9762 -4.4957 0.0038 34 1 1.1079 -2.9274 0.0030 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568502703.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:19:09 Heat of formation + Delta-G solvation = 62.667714 kcal Electronic energy + Delta-G solvation = -16739.750138 eV Core-core repulsion = 14058.673313 eV Total energy + Delta-G solvation = -2681.076825 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.06366 -39.09668 -36.05793 -34.99196 -34.34795 -31.42165 -30.61473 -30.18835 -28.18934 -26.22508 -24.23187 -23.58517 -21.96867 -20.44970 -19.32636 -17.96370 -17.70639 -17.20583 -16.45663 -16.13209 -15.60710 -15.16323 -14.99145 -14.75008 -14.41985 -14.32775 -14.22533 -13.58372 -13.50715 -13.32779 -13.01060 -12.81730 -12.64942 -12.37191 -12.04359 -11.83614 -11.58220 -11.48916 -10.95880 -10.79502 -10.49869 -8.76275 -8.37136 -8.20657 -6.45485 0.22111 0.72820 1.38599 1.39604 1.50712 1.56747 1.62484 2.31606 2.73632 2.95095 3.00291 3.58366 3.73315 3.86368 4.28607 4.38028 4.42431 4.49785 4.56324 4.63964 4.69747 4.74359 4.85776 4.88545 5.08954 5.10120 5.24111 5.28248 5.37646 5.56232 5.63597 5.86341 6.04209 6.21247 6.51829 6.62759 6.80404 6.97372 7.22189 8.78660 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.037346 B = 0.004998 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.569567 B = 5600.879383 C = 6324.687540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.108 3.892 3 N -0.302 5.302 4 N -0.429 5.429 5 C 0.108 3.892 6 C 0.164 3.836 7 C -0.262 4.262 8 C 0.261 3.739 9 N -0.724 5.724 10 C 0.236 3.764 11 C -0.552 4.552 12 H 0.043 0.957 13 C 0.017 3.983 14 N -0.940 5.940 15 Si 0.948 3.052 16 H -0.263 1.263 17 H -0.281 1.281 18 H -0.241 1.241 19 C -0.237 4.237 20 C 0.014 3.986 21 C -0.258 4.258 22 H 0.095 0.905 23 H 0.084 0.916 24 H 0.098 0.902 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.125 0.875 29 H 0.398 0.602 30 H 0.022 0.978 31 H 0.021 0.979 32 H 0.271 0.729 33 H 0.127 0.873 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.151 14.974 -0.115 20.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.069 4.069 3 N -0.116 5.116 4 N -0.218 5.218 5 C -0.033 4.033 6 C 0.049 3.951 7 C -0.292 4.292 8 C 0.150 3.850 9 N -0.348 5.348 10 C 0.112 3.888 11 C -0.590 4.590 12 H 0.061 0.939 13 C -0.182 4.182 14 N -0.579 5.579 15 Si 0.770 3.230 16 H -0.188 1.188 17 H -0.206 1.206 18 H -0.164 1.164 19 C -0.260 4.260 20 C -0.006 4.006 21 C -0.267 4.267 22 H 0.113 0.887 23 H 0.102 0.898 24 H 0.117 0.883 25 H 0.092 0.908 26 H 0.109 0.891 27 H 0.114 0.886 28 H 0.143 0.857 29 H 0.232 0.768 30 H 0.040 0.960 31 H 0.039 0.961 32 H 0.080 0.920 33 H 0.145 0.855 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -13.914 15.981 -0.116 21.190 hybrid contribution 0.917 -1.358 0.009 1.638 sum -12.997 14.623 -0.106 19.565 Atomic orbital electron populations 1.20390 0.83089 1.04869 1.04504 1.24088 0.98034 0.88048 0.96711 1.76393 0.87561 1.24424 1.23219 1.48250 1.04474 1.02673 1.66364 1.21889 0.84473 0.93389 1.03541 1.18564 0.95530 0.84693 0.96352 1.19114 0.97345 0.89739 1.22960 1.17892 0.88836 0.88666 0.89564 1.45050 1.06386 1.04963 1.78379 1.19220 0.95730 0.77891 0.95915 1.21341 0.92633 0.92292 1.52710 0.93925 1.25803 1.00663 0.98365 0.93367 1.70031 1.28427 1.08535 1.50936 0.85704 0.79481 0.78219 0.79588 1.18753 1.20600 1.16418 1.20487 0.90891 1.00595 1.13989 1.20305 0.99669 0.89389 0.91278 1.19856 0.91831 0.94807 1.20230 0.88706 0.89755 0.88297 0.90806 0.89075 0.88634 0.85695 0.76776 0.95984 0.96115 0.91985 0.85535 0.82346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.10 10.48 71.24 0.75 -0.36 16 2 C 0.11 2.86 7.43 44.80 0.33 3.20 16 3 N -0.30 -8.96 12.40 -43.67 -0.54 -9.50 16 4 N -0.43 -12.68 4.05 -361.08 -1.46 -14.15 16 5 C 0.11 2.22 11.40 127.77 1.46 3.67 16 6 C 0.16 5.34 6.86 39.19 0.27 5.61 16 7 C -0.26 -8.76 9.84 22.50 0.22 -8.54 16 8 C 0.26 9.45 6.64 38.23 0.25 9.70 16 9 N -0.72 -29.17 5.72 -343.06 -1.96 -31.13 16 10 C 0.24 10.72 3.72 85.63 0.32 11.04 16 11 C -0.55 -30.33 9.83 25.60 0.25 -30.08 16 12 H 0.04 2.57 7.84 -2.91 -0.02 2.55 16 13 C 0.02 0.96 5.47 84.65 0.46 1.42 16 14 N -0.94 -56.45 13.96 21.45 0.30 -56.15 16 15 Si 0.95 41.32 27.47 68.60 1.88 43.20 16 16 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 17 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.24 -9.59 6.54 99.48 0.65 -8.94 16 19 C -0.24 -7.80 9.23 22.15 0.20 -7.60 16 20 C 0.01 0.40 10.05 22.24 0.22 0.62 16 21 C -0.26 -7.79 6.33 -20.22 -0.13 -7.92 16 22 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.09 1.66 8.13 -2.39 -0.02 1.64 16 27 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.13 3.80 8.06 -2.91 -0.02 3.77 16 29 H 0.40 15.69 8.32 -92.71 -0.77 14.92 16 30 H 0.02 1.00 6.99 -2.38 -0.02 0.99 16 31 H 0.02 0.93 7.36 -2.39 -0.02 0.92 16 32 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 33 H 0.13 4.11 6.68 -2.91 -0.02 4.09 16 34 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -67.87 292.08 3.11 -64.76 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.28 Total: 22.20 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: 4.61 Total: -19.22 kcal Atomic # 7 Polarization: -107.26 SS G_CDS: -3.67 Total: -110.93 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 1.88 Total: 43.20 kcal Total: -67.87 3.11 -64.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568502703.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.423 kcal (2) G-P(sol) polarization free energy of solvation -67.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds