Wall clock time and date at job start Thu Apr 9 2020 12:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99732 * 2 1 4 4 H 1.48499 * 109.47169 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47321 * 300.00042 * 3 2 1 6 6 H 1.48507 * 109.47044 * 60.00281 * 3 2 1 7 7 C 1.37877 * 120.00264 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00005 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99742 * 0.02562 * 7 2 1 10 10 C 1.53507 * 114.16919 * 180.02562 * 9 7 2 11 11 N 1.47481 * 87.93256 * 220.32529 * 10 9 7 12 12 C 1.39057 * 111.00141 * 138.70222 * 11 10 9 13 13 C 1.39523 * 120.23753 * 180.02562 * 12 11 10 14 14 C 1.38407 * 117.83415 * 180.02562 * 13 12 11 15 15 C 1.38688 * 118.44887 * 0.02562 * 14 13 12 16 16 N 1.32074 * 119.59233 * 359.97438 * 15 14 13 17 17 N 1.28259 * 122.38896 * 0.02562 * 16 15 14 18 18 C 1.51320 * 109.50295 * 179.97438 * 15 14 13 19 19 C 1.54371 * 105.24851 * 17.12974 * 18 15 14 20 20 C 1.50994 * 131.57441 * 180.02562 * 14 13 12 21 21 C 1.47480 * 87.83421 * 27.01046 * 11 10 9 22 22 H 0.96993 * 120.00016 * 359.97438 * 1 2 3 23 23 H 1.09000 * 113.25670 * 312.94820 * 9 7 2 24 24 H 1.09004 * 113.48287 * 105.55783 * 10 9 7 25 25 H 1.09002 * 113.53275 * 335.10111 * 10 9 7 26 26 H 1.08006 * 121.08358 * 0.02748 * 13 12 11 27 27 H 1.09000 * 110.29279 * 136.07269 * 18 15 14 28 28 H 1.09002 * 110.29035 * 258.19234 * 18 15 14 29 29 H 1.09004 * 110.80549 * 91.99529 * 19 18 15 30 30 H 1.09001 * 110.80947 * 215.50088 * 19 18 15 31 31 H 1.08996 * 110.31210 * 44.02254 * 20 14 13 32 32 H 1.09000 * 110.39566 * 281.88407 * 20 14 13 33 33 H 1.08997 * 113.47478 * 87.75533 * 21 11 10 34 34 H 1.08997 * 113.47145 * 218.22410 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.1498 -3.7437 -0.0016 11 7 1.2084 -4.3579 -0.9563 12 6 1.8891 -5.0465 -1.9544 13 6 1.1824 -5.7026 -2.9627 14 6 1.9100 -6.3730 -3.9306 15 6 3.2942 -6.3569 -3.8461 16 7 3.8796 -5.7090 -2.8551 17 7 3.2136 -5.0851 -1.9539 18 6 3.8798 -7.1463 -4.9965 19 6 2.7357 -7.2745 -6.0250 20 6 1.4761 -7.1696 -5.1377 21 6 0.8567 -2.9960 -1.3996 22 1 -0.4850 0.8400 0.0004 23 1 0.4448 -2.5312 0.7310 24 1 2.1859 -4.2532 0.9614 25 1 3.1398 -3.5657 -0.4215 26 1 0.1027 -5.6877 -2.9872 27 1 4.7221 -6.6097 -5.4332 28 1 4.1945 -8.1330 -4.6565 29 1 2.7704 -6.4581 -6.7464 30 1 2.7746 -8.2401 -6.5292 31 1 0.6809 -6.6476 -5.6698 32 1 1.1412 -8.1624 -4.8373 33 1 1.5013 -2.6175 -2.1928 34 1 -0.2032 -2.8718 -1.6214 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596433777.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:19:35 Heat of formation + Delta-G solvation = 96.623106 kcal Electronic energy + Delta-G solvation = -17140.259958 eV Core-core repulsion = 14460.655549 eV Total energy + Delta-G solvation = -2679.604409 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.32069 -39.17883 -36.72348 -33.23380 -32.25276 -30.41665 -28.89244 -26.98046 -25.31149 -24.34190 -23.84898 -21.55315 -20.87682 -18.90183 -17.38691 -17.01391 -16.12448 -15.61396 -15.26743 -14.67973 -14.44339 -13.96134 -13.81472 -13.18657 -13.00351 -12.83100 -12.28917 -12.01320 -11.63162 -11.47314 -11.43809 -11.18044 -10.97615 -10.65170 -10.50865 -10.16250 -9.77480 -9.59061 -9.25401 -9.21895 -8.95512 -8.51133 -8.07589 -6.10886 -4.14979 1.03319 1.17607 3.27138 3.35565 3.40946 3.66456 3.85474 4.11702 4.37777 4.53994 4.64748 4.69601 4.74356 5.12214 5.15898 5.20058 5.39237 5.45538 5.49896 5.61277 5.69182 5.79795 5.90590 5.97454 6.06821 6.24801 6.31663 6.46107 6.65808 6.72465 6.88362 6.92164 7.65352 7.80026 7.91652 8.29943 8.89616 9.07402 9.50734 10.98828 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.038713 B = 0.005102 C = 0.005006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.094434 B = 5487.228400 C = 5591.521656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.067 3.933 3 Si 0.893 3.107 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.043 3.957 10 C 0.004 3.996 11 N -0.440 5.440 12 C 0.238 3.762 13 C -0.111 4.111 14 C -0.092 4.092 15 C 0.025 3.975 16 N -0.222 5.222 17 N -0.270 5.270 18 C -0.060 4.060 19 C -0.119 4.119 20 C -0.080 4.080 21 C 0.022 3.978 22 H 0.262 0.738 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.089 0.911 26 H 0.147 0.853 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.907 -13.493 -11.166 17.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.720 3.280 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.551 4.551 8 H 0.081 0.919 9 C 0.024 3.976 10 C -0.124 4.124 11 N -0.161 5.161 12 C 0.001 3.999 13 C -0.141 4.141 14 C -0.103 4.103 15 C -0.123 4.123 16 N -0.063 5.063 17 N -0.116 5.116 18 C -0.099 4.099 19 C -0.157 4.157 20 C -0.117 4.117 21 C -0.104 4.104 22 H 0.072 0.928 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.107 0.893 26 H 0.164 0.836 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.634 -13.356 -10.166 16.990 hybrid contribution -0.510 0.866 -0.957 1.388 sum 2.124 -12.491 -11.123 16.860 Atomic orbital electron populations 1.69970 1.06027 1.26825 1.49622 1.25032 0.94852 0.99322 0.94396 0.86518 0.80347 0.83455 0.77650 1.19526 1.20994 1.20804 1.21061 0.93069 0.89823 1.51189 0.91918 1.20178 0.94500 0.91456 0.91498 1.24118 0.97226 0.96210 0.94834 1.66549 1.26785 1.14980 1.07778 1.22393 0.90793 0.94570 0.92156 1.21464 1.01957 0.97130 0.93551 1.21499 0.95393 0.96666 0.96722 1.23355 0.92924 0.98832 0.97150 1.72387 1.31784 1.03543 0.98565 1.73343 1.06380 1.14124 1.17728 1.20848 0.98669 0.99150 0.91232 1.22354 0.93244 1.02982 0.97094 1.20998 0.98884 0.99501 0.92361 1.24252 1.00853 0.82419 1.02873 0.92825 0.91228 0.91397 0.89323 0.83565 0.89561 0.89331 0.90468 0.89743 0.89789 0.89293 0.92162 0.90679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.19 13.26 55.43 0.74 -24.45 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -14.02 8.82 -34.44 -0.30 -14.33 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.04 1.08 3.77 -91.25 -0.34 0.73 16 10 C 0.00 0.09 6.96 -7.55 -0.05 0.03 16 11 N -0.44 -9.39 6.43 -182.53 -1.17 -10.57 16 12 C 0.24 4.74 5.93 -154.74 -0.92 3.82 16 13 C -0.11 -1.81 10.13 -39.04 -0.40 -2.20 16 14 C -0.09 -1.28 6.20 -104.25 -0.65 -1.93 16 15 C 0.03 0.38 7.42 -82.02 -0.61 -0.23 16 16 N -0.22 -4.21 11.50 33.79 0.39 -3.82 16 17 N -0.27 -5.67 9.40 31.24 0.29 -5.38 16 18 C -0.06 -0.60 6.76 -26.86 -0.18 -0.78 16 19 C -0.12 -0.90 7.08 -25.26 -0.18 -1.08 16 20 C -0.08 -0.73 6.76 -26.99 -0.18 -0.91 16 21 C 0.02 0.51 7.23 -7.55 -0.05 0.45 16 22 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 23 H 0.07 1.86 8.11 -51.93 -0.42 1.44 16 24 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 25 H 0.09 2.08 6.64 -51.93 -0.35 1.74 16 26 H 0.15 2.09 8.06 -52.48 -0.42 1.67 16 27 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 1.44 7.85 -51.93 -0.41 1.04 16 34 H 0.07 1.70 8.14 -51.93 -0.42 1.28 16 LS Contribution 285.88 15.07 4.31 4.31 Total: -1.00 -30.40 285.88 -8.96 -39.35 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -4.52 Total: -0.84 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -3.96 Total: -14.68 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: 0.24 Total: -44.22 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.40 -8.96 -39.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596433777.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.975 kcal (2) G-P(sol) polarization free energy of solvation -30.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds