Wall clock time and date at job start Thu Apr 9 2020 12:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99884 * 2 1 4 4 H 1.48508 * 109.47085 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47200 * 299.99751 * 3 2 1 6 6 H 1.48494 * 109.47239 * 60.00082 * 3 2 1 7 7 C 1.37879 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99958 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99689 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46968 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47108 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.47104 * 180.02562 * 11 10 9 13 13 C 1.39680 * 119.99932 * 179.97438 * 12 11 10 14 14 C 1.38931 * 120.07250 * 0.02562 * 13 12 11 15 15 C 1.38087 * 119.92240 * 180.02562 * 14 13 12 16 16 C 1.38307 * 120.07509 * 359.97438 * 15 14 13 17 17 C 1.38261 * 120.14992 * 359.97438 * 16 15 14 18 18 C 1.38125 * 120.07750 * 0.04545 * 17 16 15 19 19 C 1.50702 * 120.04212 * 179.70116 * 18 17 16 20 20 C 1.52998 * 117.49297 * 8.62363 * 19 18 17 21 21 C 1.52994 * 117.49919 * 300.00135 * 19 18 17 22 22 H 0.97000 * 120.00044 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47029 * 60.00111 * 9 7 2 24 24 H 1.09001 * 109.47079 * 300.00014 * 9 7 2 25 25 H 1.09002 * 109.46978 * 60.00296 * 10 9 7 26 26 H 1.09001 * 109.47409 * 300.00028 * 10 9 7 27 27 H 1.08996 * 109.47794 * 59.99987 * 11 10 9 28 28 H 1.09003 * 109.47335 * 300.00073 * 11 10 9 29 29 H 0.96993 * 119.99983 * 359.97438 * 12 11 10 30 30 H 1.08001 * 120.04149 * 0.03555 * 14 13 12 31 31 H 1.08001 * 119.96114 * 179.97438 * 15 14 13 32 32 H 1.07998 * 119.92621 * 179.97438 * 16 15 14 33 33 H 1.07995 * 119.96543 * 180.02562 * 17 16 15 34 34 H 1.09002 * 115.55120 * 154.32595 * 19 18 17 35 35 H 1.08997 * 117.50358 * 0.02562 * 20 19 18 36 36 H 1.09004 * 117.49320 * 145.02588 * 20 19 18 37 37 H 1.09002 * 117.50130 * 214.97839 * 21 19 18 38 38 H 1.09008 * 117.49926 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9870 -0.0001 12 7 2.4324 -6.1005 0.0005 13 6 1.9668 -7.4175 0.0006 14 6 0.6012 -7.6731 -0.0004 15 6 0.1443 -8.9762 0.0003 16 6 1.0445 -10.0262 0.0014 17 6 2.4041 -9.7753 0.0013 18 6 2.8680 -8.4743 0.0011 19 6 4.3502 -8.2018 0.0078 20 6 5.2885 -9.3942 -0.1888 21 6 5.1619 -8.7391 1.1881 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 2.8719 -3.6043 0.8906 26 1 2.8720 -3.6043 -0.8894 27 1 0.8540 -5.0446 -0.8903 28 1 0.8534 -5.0451 0.8896 29 1 3.3860 -5.9233 0.0008 30 1 -0.1022 -6.8536 -0.0018 31 1 -0.9171 -9.1756 -0.0001 32 1 0.6845 -11.0444 0.0023 33 1 3.1044 -10.5975 0.0018 34 1 4.6544 -7.2459 -0.4186 35 1 4.8338 -10.3756 -0.3234 36 1 6.2103 -9.2228 -0.7447 37 1 6.0004 -8.1370 1.5381 38 1 4.6238 -9.2895 1.9600 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168433521.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:18:51 Heat of formation + Delta-G solvation = 31.268335 kcal Electronic energy + Delta-G solvation = -16676.243519 eV Core-core repulsion = 14097.345458 eV Total energy + Delta-G solvation = -2578.898061 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.82048 -36.87504 -35.91180 -33.58521 -31.61023 -30.38323 -28.80423 -26.15659 -24.20702 -23.09052 -22.49393 -21.07934 -20.64428 -19.87290 -17.42070 -16.48514 -15.82008 -15.69150 -14.81991 -14.62175 -14.45214 -14.07370 -13.88205 -13.53712 -13.09158 -12.39902 -12.24938 -11.90043 -11.79169 -11.64307 -11.18251 -10.96752 -10.96186 -10.71584 -10.64305 -10.54814 -10.37977 -10.06676 -9.61809 -9.49144 -9.13604 -8.55361 -8.39844 -7.11208 -6.04545 -4.07283 1.49912 1.78991 3.28448 3.36038 3.39775 3.65645 3.75797 4.15098 4.42838 4.54928 4.77732 4.92596 5.00530 5.18354 5.24397 5.31610 5.50058 5.53965 5.61156 5.68625 5.73539 5.75143 5.90318 5.99413 6.00758 6.11194 6.17463 6.50391 6.57966 6.59699 6.69252 6.76526 6.96453 7.05177 7.59630 7.60883 7.72961 7.94250 7.99148 8.36278 8.99448 9.57191 11.06839 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.031768 B = 0.003984 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.171737 B = 7026.482862 C = 7814.219438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.120 3.880 12 N -0.741 5.741 13 C 0.232 3.768 14 C -0.198 4.198 15 C -0.074 4.074 16 C -0.189 4.189 17 C -0.075 4.075 18 C -0.138 4.138 19 C -0.104 4.104 20 C -0.178 4.178 21 C -0.172 4.172 22 H 0.261 0.739 23 H 0.018 0.982 24 H 0.018 0.982 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.397 0.603 30 H 0.123 0.877 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.785 -19.290 0.338 20.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.158 4.158 11 C -0.003 4.003 12 N -0.369 5.369 13 C 0.126 3.874 14 C -0.221 4.221 15 C -0.093 4.093 16 C -0.209 4.209 17 C -0.094 4.094 18 C -0.143 4.143 19 C -0.123 4.123 20 C -0.215 4.215 21 C -0.209 4.209 22 H 0.070 0.930 23 H 0.037 0.963 24 H 0.037 0.963 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.232 0.768 30 H 0.141 0.859 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.123 0.877 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.482 -18.980 0.340 19.759 hybrid contribution 0.709 1.095 -0.019 1.305 sum 6.192 -17.885 0.321 18.929 Atomic orbital electron populations 1.69969 1.06060 1.26588 1.50741 1.25024 0.94858 0.99311 0.95240 0.86530 0.80084 0.83730 0.77625 1.19752 1.20966 1.20969 1.21247 0.93051 0.90955 1.50742 0.92629 1.19032 0.93842 0.90957 0.97512 1.21845 0.99768 0.93357 1.00838 1.21613 0.92219 0.85843 1.00653 1.45081 1.09000 1.02231 1.80580 1.17685 0.92433 0.84608 0.92640 1.20709 0.93546 0.97469 1.10396 1.20863 0.99146 0.92167 0.97136 1.20756 0.93063 0.98519 1.08562 1.20691 0.95401 0.95169 0.98100 1.18546 0.92215 0.92431 1.11117 1.20730 0.89779 0.98350 1.03409 1.23023 1.01072 0.97367 1.00025 1.23025 1.02346 1.03920 0.91655 0.92983 0.96346 0.96332 0.92817 0.92853 0.92561 0.92552 0.76776 0.85865 0.86513 0.86902 0.86598 0.87691 0.88518 0.88744 0.88728 0.88711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 11 C 0.12 2.04 4.91 -4.04 -0.02 2.02 16 12 N -0.74 -11.17 5.66 -58.63 -0.33 -11.50 16 13 C 0.23 3.42 6.63 -83.78 -0.56 2.86 16 14 C -0.20 -2.85 9.31 -39.38 -0.37 -3.21 16 15 C -0.07 -0.93 10.04 -39.61 -0.40 -1.33 16 16 C -0.19 -2.22 10.04 -39.55 -0.40 -2.62 16 17 C -0.08 -0.90 9.30 -39.61 -0.37 -1.27 16 18 C -0.14 -1.82 5.63 -104.42 -0.59 -2.41 16 19 C -0.10 -1.18 5.54 -91.77 -0.51 -1.69 16 20 C -0.18 -1.65 9.86 -26.73 -0.26 -1.91 16 21 C -0.17 -1.69 10.16 -26.73 -0.27 -1.97 16 22 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 23 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.06 0.97 7.95 -51.93 -0.41 0.56 16 28 H 0.06 0.97 7.95 -51.93 -0.41 0.56 16 29 H 0.40 5.54 6.51 -40.82 -0.27 5.27 16 30 H 0.12 1.76 6.74 -52.49 -0.35 1.41 16 31 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.11 1.08 8.06 -52.49 -0.42 0.65 16 33 H 0.12 1.14 6.02 -52.49 -0.32 0.83 16 34 H 0.11 1.19 6.74 -51.93 -0.35 0.84 16 35 H 0.10 0.83 6.18 -51.93 -0.32 0.51 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 LS Contribution 313.28 15.07 4.72 4.72 Total: -1.00 -29.72 313.28 -10.10 -39.82 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -5.78 Total: 3.40 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: -4.43 Total: -26.97 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.40 Total: -37.44 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.72 -10.10 -39.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433521.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.084 kcal (2) G-P(sol) polarization free energy of solvation -29.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds