Wall clock time and date at job start Thu Apr 9 2020 12:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 112.85101 * 2 1 4 4 C 1.39668 * 120.00241 * 64.86829 * 3 2 1 5 5 C 1.38911 * 120.07892 * 186.14076 * 4 3 2 6 6 C 1.38099 * 119.92998 * 180.02562 * 5 4 3 7 7 C 1.38289 * 120.07407 * 359.97438 * 6 5 4 8 8 C 1.50695 * 119.92378 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.47268 * 90.00266 * 8 7 6 10 10 H 1.08003 * 119.99987 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99994 * 179.97438 * 9 8 7 12 12 N 1.31509 * 120.00202 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99684 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47491 * 90.00630 * 13 11 9 15 15 H 1.48507 * 109.47171 * 210.00213 * 13 11 9 16 16 H 1.48504 * 109.47537 * 329.99904 * 13 11 9 17 17 C 1.38286 * 120.14715 * 0.27280 * 7 6 5 18 18 C 1.38102 * 120.07606 * 359.45417 * 17 7 6 19 19 C 1.53783 * 113.61478 * 131.19439 * 2 1 3 20 20 C 1.53955 * 87.02203 * 89.22909 * 19 2 1 21 21 C 1.53781 * 113.61608 * 228.79950 * 2 1 3 22 22 H 1.08999 * 109.46980 * 63.34838 * 1 2 3 23 23 H 1.08998 * 109.46732 * 183.34705 * 1 2 3 24 24 H 1.09000 * 109.47140 * 303.34792 * 1 2 3 25 25 H 0.97007 * 119.99843 * 244.87382 * 3 2 1 26 26 H 1.08000 * 120.03594 * 0.04443 * 5 4 3 27 27 H 1.08005 * 119.96340 * 179.97438 * 6 5 4 28 28 H 1.08994 * 109.47462 * 329.99960 * 8 7 6 29 29 H 1.09009 * 109.46703 * 209.99748 * 8 7 6 30 30 H 0.97001 * 120.00318 * 180.02562 * 12 11 9 31 31 H 1.08000 * 119.96171 * 179.70072 * 17 7 6 32 32 H 1.08000 * 120.04080 * 180.27441 * 18 17 7 33 33 H 1.09001 * 113.61564 * 203.75181 * 19 2 1 34 34 H 1.09005 * 113.61603 * 334.64696 * 19 2 1 35 35 H 1.08991 * 113.53656 * 270.81277 * 20 19 2 36 36 H 1.09001 * 113.74203 * 139.94627 * 20 19 2 37 37 H 1.08997 * 113.61373 * 25.34732 * 21 2 1 38 38 H 1.09000 * 113.61553 * 156.25508 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0989 1.3500 0.0000 4 6 1.8967 2.1931 1.0950 5 6 2.3245 3.5137 1.0452 6 6 2.1235 4.3445 2.1299 7 6 1.4967 3.8631 3.2647 8 6 1.2785 4.7728 4.4462 9 6 -0.0536 5.4639 4.3089 10 1 -0.6795 5.2647 3.4516 11 6 -0.4734 6.3506 5.2778 12 7 0.2890 6.5936 6.3215 13 14 -2.1243 7.2077 5.1072 14 1 -3.1779 6.3860 5.7551 15 1 -2.0612 8.5385 5.7633 16 1 -2.4462 7.3802 3.6678 17 6 1.0741 2.5476 3.3196 18 6 1.2669 1.7129 2.2363 19 6 2.1460 -0.9280 1.0603 20 6 2.0950 -2.0420 -0.0011 21 6 2.1460 -0.9281 -1.0602 22 1 -0.3633 0.4610 -0.9185 23 1 -0.3633 -1.0259 0.0600 24 1 -0.3633 0.5649 0.8585 25 1 2.6160 1.6584 -0.7606 26 1 2.8135 3.8905 0.1590 27 1 2.4563 5.3713 2.0919 28 1 2.0727 5.5185 4.4821 29 1 1.2901 4.1851 5.3642 30 1 -0.0065 7.2171 7.0033 31 1 0.5892 2.1735 4.2092 32 1 0.9327 0.6868 2.2782 33 1 3.1585 -0.6477 1.3507 34 1 1.4939 -1.1079 1.9151 35 1 1.1595 -2.6013 -0.0005 36 1 2.9738 -2.6869 -0.0030 37 1 1.4940 -1.1081 -1.9148 38 1 3.1586 -0.6478 -1.3505 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164032607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:19:51 Heat of formation + Delta-G solvation = 34.260356 kcal Electronic energy + Delta-G solvation = -17224.321023 eV Core-core repulsion = 14645.552706 eV Total energy + Delta-G solvation = -2578.768317 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.08417 -38.13540 -34.32883 -32.67118 -30.32654 -29.97644 -28.73936 -26.42772 -25.71170 -23.61680 -22.48890 -21.74132 -19.98176 -18.74266 -16.75748 -16.41868 -16.19251 -15.26743 -14.84319 -14.21919 -14.05454 -13.51468 -13.18115 -12.94140 -12.60107 -12.58674 -12.35082 -12.25777 -11.99276 -11.42950 -11.26563 -11.17746 -11.07906 -10.77783 -10.60958 -10.50660 -10.31888 -9.96622 -9.65000 -9.35496 -8.94129 -8.34157 -8.14928 -6.68382 -5.94009 -3.98495 2.19976 2.44489 3.35018 3.40966 3.45678 3.70252 4.32073 4.44561 4.48470 4.65425 4.66816 4.77442 5.33404 5.38345 5.39763 5.53302 5.58798 5.60616 5.65362 5.67788 5.75585 5.91070 5.93789 6.07397 6.15315 6.26594 6.34380 6.40339 6.57732 6.79261 6.95510 7.37033 7.37792 7.53377 7.67444 7.94886 8.01409 8.03954 8.16222 8.45447 9.07444 9.64770 11.14196 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.040835 B = 0.004535 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.516464 B = 6172.689288 C = 6311.452525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.161 3.839 3 N -0.746 5.746 4 C 0.185 3.815 5 C -0.195 4.195 6 C -0.082 4.082 7 C -0.085 4.085 8 C 0.053 3.947 9 C -0.507 4.507 10 H 0.056 0.944 11 C 0.056 3.944 12 N -0.896 5.896 13 Si 0.893 3.107 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.274 1.274 17 C -0.084 4.084 18 C -0.195 4.195 19 C -0.146 4.146 20 C -0.140 4.140 21 C -0.138 4.138 22 H 0.058 0.942 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.392 0.608 26 H 0.106 0.894 27 H 0.115 0.885 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.260 0.740 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.752 -14.983 -13.383 20.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.073 3.927 3 N -0.378 5.378 4 C 0.085 3.915 5 C -0.217 4.217 6 C -0.100 4.100 7 C -0.087 4.087 8 C 0.016 3.984 9 C -0.546 4.546 10 H 0.074 0.926 11 C -0.144 4.144 12 N -0.536 5.536 13 Si 0.720 3.280 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.102 4.102 18 C -0.217 4.217 19 C -0.185 4.185 20 C -0.178 4.178 21 C -0.176 4.176 22 H 0.078 0.922 23 H 0.081 0.919 24 H 0.091 0.909 25 H 0.226 0.774 26 H 0.124 0.876 27 H 0.133 0.867 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.665 -15.026 -13.176 20.318 hybrid contribution -0.758 0.718 -0.330 1.095 sum 2.907 -14.309 -13.506 19.890 Atomic orbital electron populations 1.22000 0.93693 1.01983 1.03262 1.21459 0.93109 0.81567 0.96518 1.44453 1.60585 1.13273 1.19485 1.17571 0.96619 0.89605 0.87679 1.20471 1.08704 0.92657 0.99907 1.20811 0.98025 0.98650 0.92539 1.20444 0.96315 0.94429 0.97463 1.18242 0.97028 0.92992 0.90121 1.21144 1.02765 1.23965 1.06681 0.92589 1.25015 0.97272 0.96818 0.95339 1.69960 1.37121 1.35911 1.10609 0.86580 0.84231 0.78903 0.78241 1.20675 1.21246 1.19867 1.20861 0.98399 0.93562 0.97421 1.20718 1.07297 0.99982 0.93710 1.23488 1.02013 0.95745 0.97209 1.22770 1.02182 0.96178 0.96693 1.23199 1.01305 0.96147 0.96938 0.92249 0.91888 0.90882 0.77409 0.87589 0.86726 0.95742 0.95745 0.92991 0.86806 0.86745 0.89623 0.91046 0.90023 0.91233 0.91105 0.89790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.86 37.16 0.33 -1.34 16 2 C 0.16 1.76 1.06 -131.01 -0.14 1.62 16 3 N -0.75 -9.61 5.42 -45.24 -0.25 -9.86 16 4 C 0.18 3.04 6.42 -83.79 -0.54 2.50 16 5 C -0.20 -3.42 9.90 -39.38 -0.39 -3.81 16 6 C -0.08 -1.67 9.69 -39.61 -0.38 -2.05 16 7 C -0.08 -1.93 5.07 -104.59 -0.53 -2.46 16 8 C 0.05 1.41 5.10 -29.04 -0.15 1.27 16 9 C -0.51 -14.62 9.09 -34.44 -0.31 -14.94 16 10 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 13 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 17 C -0.08 -1.71 9.69 -39.61 -0.38 -2.09 16 18 C -0.20 -3.41 7.81 -39.38 -0.31 -3.72 16 19 C -0.15 -1.54 5.98 -25.83 -0.15 -1.70 16 20 C -0.14 -1.15 7.74 -25.83 -0.20 -1.35 16 21 C -0.14 -1.18 7.39 -25.92 -0.19 -1.37 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.58 7.31 -51.93 -0.38 0.20 16 24 H 0.07 0.96 5.98 -51.93 -0.31 0.65 16 25 H 0.39 4.40 8.71 -40.82 -0.36 4.05 16 26 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 27 H 0.11 2.29 8.06 -52.48 -0.42 1.86 16 28 H 0.02 0.68 8.08 -51.93 -0.42 0.26 16 29 H 0.02 0.68 8.08 -51.92 -0.42 0.26 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.11 2.27 8.06 -52.49 -0.42 1.84 16 32 H 0.11 1.76 4.22 -52.49 -0.22 1.54 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.77 7.08 -51.93 -0.37 0.41 16 35 H 0.08 0.60 7.60 -51.93 -0.39 0.21 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 306.78 15.07 4.62 4.62 Total: -1.00 -30.58 306.78 -9.14 -39.72 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -5.79 Total: 2.78 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: -3.45 Total: -27.90 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 0.49 Total: -36.19 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.58 -9.14 -39.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164032607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.981 kcal (2) G-P(sol) polarization free energy of solvation -30.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds