Wall clock time and date at job start Thu Apr 9 2020 12:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86793 * 120.00371 * 2 1 4 4 H 1.48504 * 109.47199 * 270.00218 * 3 2 1 5 5 H 1.48507 * 109.47234 * 29.99463 * 3 2 1 6 6 H 1.48506 * 109.47658 * 149.99789 * 3 2 1 7 7 C 1.40108 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99984 * 163.66073 * 7 2 1 9 9 C 1.40754 * 120.00218 * 343.37851 * 7 2 1 10 10 C 1.40874 * 120.62093 * 334.64093 * 9 7 2 11 11 C 1.36317 * 119.95655 * 179.76300 * 10 9 7 12 12 C 1.38820 * 121.33770 * 0.51984 * 11 10 9 13 13 C 1.37883 * 121.30320 * 359.73897 * 12 11 10 14 14 C 1.39554 * 119.91925 * 359.97438 * 13 12 11 15 15 C 1.47131 * 120.63951 * 179.97438 * 14 13 12 16 16 C 1.30061 * 115.22167 * 105.02131 * 15 14 13 17 17 C 1.50066 * 126.80170 * 181.18086 * 16 15 14 18 18 S 1.81824 * 109.20095 * 341.75332 * 17 16 15 19 19 C 1.82067 * 101.23041 * 44.58981 * 18 17 16 20 20 C 1.48963 * 115.22324 * 284.77476 * 15 14 13 21 21 H 0.97002 * 120.00159 * 0.02562 * 1 2 3 22 22 H 1.08001 * 120.02165 * 359.97438 * 10 9 7 23 23 H 1.08001 * 119.33180 * 180.27845 * 11 10 9 24 24 H 1.08001 * 119.34852 * 179.75405 * 12 11 10 25 25 H 1.07997 * 120.03996 * 179.97438 * 13 12 11 26 26 H 1.07999 * 116.59502 * 1.15905 * 16 15 14 27 27 H 1.08998 * 109.51531 * 101.67068 * 17 16 15 28 28 H 1.08999 * 109.51542 * 221.78492 * 17 16 15 29 29 H 1.08997 * 109.72869 * 57.26751 * 19 18 17 30 30 H 1.09005 * 109.72987 * 177.90120 * 19 18 17 31 31 H 1.08994 * 108.95883 * 281.39958 * 20 15 14 32 32 H 1.09009 * 108.95273 * 40.04219 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6176 0.0000 4 1 2.4891 2.0463 -1.4001 5 1 1.4390 2.6527 0.7000 6 1 3.5392 1.4401 0.7001 7 6 2.0080 -1.2134 0.0005 8 1 3.0553 -1.2325 -0.2626 9 6 1.3483 -2.4067 0.3498 10 6 0.2117 -2.3814 1.1817 11 6 -0.4195 -3.5448 1.5074 12 6 0.0401 -4.7699 1.0437 13 6 1.1504 -4.8575 0.2308 14 6 1.8342 -3.6990 -0.1407 15 6 3.0210 -3.7741 -1.0069 16 6 2.8326 -3.4016 -2.2387 17 6 3.8496 -3.3972 -3.3422 18 16 5.5164 -3.4728 -2.6195 19 6 5.2957 -4.7622 -1.3532 20 6 4.2624 -4.2602 -0.3422 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1612 -1.4404 1.5584 23 1 -1.2927 -3.5132 2.1423 24 1 -0.4825 -5.6722 1.3250 25 1 1.4904 -5.8214 -0.1179 26 1 1.8404 -3.0600 -2.4941 27 1 3.6923 -4.2627 -3.9858 28 1 3.7471 -2.4840 -3.9283 29 1 4.9416 -5.6807 -1.8212 30 1 6.2438 -4.9484 -0.8485 31 1 4.6958 -3.4454 0.2377 32 1 4.0059 -5.0761 0.3336 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236366607.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:20:25 Heat of formation + Delta-G solvation = 21.894618 kcal Electronic energy + Delta-G solvation = -15368.348816 eV Core-core repulsion = 12998.245395 eV Total energy + Delta-G solvation = -2370.103421 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.077 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -37.97474 -35.69604 -33.71892 -31.18819 -30.06289 -29.51014 -26.55705 -24.85848 -23.15256 -20.79656 -20.51366 -17.91734 -17.26074 -16.07639 -15.22289 -15.03088 -14.22713 -13.83179 -13.76395 -13.33369 -13.24681 -12.95589 -12.63393 -12.43414 -11.69039 -11.64798 -11.41389 -11.12118 -10.96219 -10.69428 -10.45519 -10.33358 -9.72165 -9.63331 -9.27527 -9.23226 -8.11158 -7.44800 -7.37873 -7.26343 -6.82413 -4.38087 2.07882 2.62573 2.75671 2.89947 3.04215 3.09377 3.16449 3.23379 3.88671 4.58837 5.17092 5.20550 5.43872 5.56505 5.61956 5.67621 5.83875 5.97050 6.12602 6.18746 6.38593 6.40165 6.50560 6.76166 7.00491 7.18865 7.21736 7.30210 7.55552 7.78340 7.89913 8.06079 8.12537 8.21716 8.59151 8.80376 8.94643 10.08444 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.017093 B = 0.010319 C = 0.007062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.751161 B = 2712.889986 C = 3963.755979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.441 4.441 8 H 0.082 0.918 9 C 0.131 3.869 10 C -0.174 4.174 11 C -0.095 4.095 12 C -0.255 4.255 13 C -0.073 4.073 14 C -0.204 4.204 15 C -0.017 4.017 16 C -0.175 4.175 17 C -0.031 4.031 18 S -0.286 6.286 19 C -0.073 4.073 20 C -0.078 4.078 21 H 0.282 0.718 22 H 0.117 0.883 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.115 0.885 27 H 0.084 0.916 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.594 -4.068 -2.497 7.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.143 4.143 3 Si 0.730 3.270 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.470 4.470 8 H 0.100 0.900 9 C 0.129 3.871 10 C -0.193 4.193 11 C -0.114 4.114 12 C -0.274 4.274 13 C -0.092 4.092 14 C -0.205 4.205 15 C -0.018 4.018 16 C -0.194 4.194 17 C -0.179 4.179 18 S -0.061 6.061 19 C -0.221 4.221 20 C -0.116 4.116 21 H 0.093 0.907 22 H 0.135 0.865 23 H 0.101 0.899 24 H 0.101 0.899 25 H 0.104 0.896 26 H 0.133 0.867 27 H 0.102 0.898 28 H 0.122 0.878 29 H 0.099 0.901 30 H 0.118 0.882 31 H 0.103 0.897 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.308 -3.300 -2.785 7.645 hybrid contribution -0.949 0.154 0.284 1.002 sum 5.359 -3.146 -2.501 6.699 Atomic orbital electron populations 1.69798 1.07699 1.29453 1.34060 1.25983 0.94693 1.01474 0.92143 0.86338 0.80784 0.80448 0.79467 1.19307 1.20090 1.18210 1.19513 0.97864 0.90696 1.38901 0.89961 1.18607 0.90372 0.90440 0.87728 1.20985 0.99572 0.96867 1.01897 1.20350 0.98262 0.93388 0.99394 1.20089 1.02001 0.96013 1.09310 1.20482 0.95715 0.95358 0.97613 1.19877 1.00188 0.93453 1.06998 1.18628 0.93590 0.96580 0.92995 1.21652 0.99439 1.04971 0.93318 1.22179 0.91631 1.05039 0.99033 1.86716 1.18552 1.54541 1.46253 1.23399 1.02920 0.98077 0.97741 1.20352 0.92755 1.01372 0.97109 0.90716 0.86543 0.89915 0.89906 0.89647 0.86687 0.89777 0.87757 0.90135 0.88172 0.89673 0.90390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.81 10.96 55.56 0.61 -19.20 16 2 C 0.08 1.86 5.17 -17.31 -0.09 1.78 16 3 Si 0.91 18.54 29.59 -169.99 -5.03 13.51 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.44 -11.30 8.31 -37.93 -0.32 -11.62 16 8 H 0.08 2.10 7.39 -52.48 -0.39 1.71 16 9 C 0.13 3.39 5.72 -104.62 -0.60 2.79 16 10 C -0.17 -4.48 8.64 -39.28 -0.34 -4.82 16 11 C -0.10 -2.25 9.91 -40.06 -0.40 -2.65 16 12 C -0.25 -5.74 9.98 -39.50 -0.39 -6.14 16 13 C -0.07 -1.63 9.73 -39.22 -0.38 -2.02 16 14 C -0.20 -4.74 4.78 -102.47 -0.49 -5.22 16 15 C -0.02 -0.35 4.21 -103.30 -0.43 -0.78 16 16 C -0.17 -3.39 8.88 -36.07 -0.32 -3.71 16 17 C -0.03 -0.50 6.75 35.70 0.24 -0.26 16 18 S -0.29 -4.61 22.34 -107.50 -2.40 -7.01 16 19 C -0.07 -1.05 6.60 37.18 0.25 -0.81 16 20 C -0.08 -1.33 5.51 -28.69 -0.16 -1.49 16 21 H 0.28 6.48 8.29 -40.82 -0.34 6.14 16 22 H 0.12 3.08 6.21 -52.49 -0.33 2.76 16 23 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 24 H 0.08 1.67 8.06 -52.49 -0.42 1.25 16 25 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 26 H 0.12 2.47 7.76 -52.49 -0.41 2.06 16 27 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.10 1.59 8.14 -51.93 -0.42 1.16 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.08 1.27 8.00 -51.92 -0.42 0.86 16 LS Contribution 280.95 15.07 4.23 4.23 Total: -1.00 -26.51 280.95 -10.07 -36.58 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -4.05 Total: 6.82 kcal Atomic # 6 Polarization: -31.51 SS G_CDS: -3.43 Total: -34.94 kcal Atomic # 7 Polarization: -19.81 SS G_CDS: 0.61 Total: -19.20 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Atomic # 16 Polarization: -4.61 SS G_CDS: -2.40 Total: -7.01 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -26.51 -10.07 -36.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236366607.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.478 kcal (2) G-P(sol) polarization free energy of solvation -26.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds