Wall clock time and date at job start Thu Apr 9 2020 12:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47203 * 2 1 4 4 C 1.50698 * 109.47076 * 120.00066 * 2 1 3 5 5 H 1.07998 * 119.99859 * 120.00806 * 4 2 1 6 6 C 1.37880 * 119.99930 * 300.00044 * 4 2 1 7 7 N 1.31518 * 119.99821 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 120.00070 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.46819 * 89.99909 * 8 6 4 10 10 H 1.48494 * 109.47212 * 209.99859 * 8 6 4 11 11 H 1.48503 * 109.47207 * 330.00010 * 8 6 4 12 12 N 1.46497 * 109.47575 * 240.00315 * 2 1 3 13 13 C 1.34783 * 120.00315 * 84.99723 * 12 2 1 14 14 O 1.21669 * 119.99436 * 0.02562 * 13 12 2 15 15 C 1.46649 * 120.00136 * 180.02562 * 13 12 2 16 16 C 1.34661 * 120.00317 * 174.09544 * 15 13 12 17 17 C 1.47363 * 119.99645 * 353.01965 * 16 15 13 18 18 C 1.39821 * 120.13614 * 118.94558 * 17 16 15 19 19 N 1.31981 * 119.83576 * 179.72522 * 18 17 16 20 20 C 1.32204 * 120.10474 * 0.50848 * 19 18 17 21 21 C 1.38650 * 120.26837 * 359.48646 * 20 19 18 22 22 N 1.31847 * 120.16943 * 0.25929 * 21 20 19 23 23 H 1.09010 * 109.46828 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47788 * 299.99802 * 1 2 3 25 25 H 1.09000 * 109.47035 * 60.00544 * 1 2 3 26 26 H 0.97001 * 119.99853 * 180.02562 * 7 6 4 27 27 H 0.97004 * 119.99969 * 265.00236 * 12 2 1 28 28 H 1.08003 * 120.00025 * 354.08587 * 15 13 12 29 29 H 1.07998 * 120.00721 * 173.02331 * 16 15 13 30 30 H 1.08004 * 120.08045 * 359.97401 * 18 17 16 31 31 H 1.07998 * 119.86263 * 179.77070 * 20 19 18 32 32 H 1.08003 * 119.91642 * 180.23446 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 2.1380 -0.8591 3.5565 8 14 0.6246 1.2790 2.6541 9 1 -0.8030 0.8725 2.6998 10 1 0.9757 1.9950 3.9068 11 1 0.8469 2.1765 1.4920 12 7 2.0184 -0.6905 -1.1961 13 6 2.1471 -0.0181 -2.3572 14 8 1.8581 1.1625 -2.4116 15 6 2.6356 -0.7095 -3.5547 16 6 2.6520 -0.0720 -4.7407 17 6 2.0392 1.2621 -4.8686 18 6 2.8200 2.3605 -5.2412 19 7 2.2639 3.5516 -5.3593 20 6 0.9739 3.7082 -5.1161 21 6 0.1955 2.6220 -4.7463 22 7 0.7389 1.4263 -4.6300 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.9033 -0.5279 4.4376 27 1 2.2491 -1.6317 -1.1526 28 1 2.9822 -1.7301 -3.4854 29 1 3.1143 -0.5383 -5.5982 30 1 3.8747 2.2337 -5.4359 31 1 0.5236 4.6853 -5.2103 32 1 -0.8586 2.7557 -4.5526 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491827417.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:20:26 Heat of formation + Delta-G solvation = 41.480074 kcal Electronic energy + Delta-G solvation = -17391.871177 eV Core-core repulsion = 14546.731014 eV Total energy + Delta-G solvation = -2845.140163 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.78845 -39.00330 -35.34893 -34.28094 -33.31734 -32.39720 -30.66479 -29.52133 -25.32105 -25.00964 -24.22691 -22.62270 -20.28266 -19.41891 -17.66670 -17.28970 -16.74982 -16.30724 -15.72219 -15.18396 -14.64593 -14.24104 -14.05264 -13.66331 -13.30345 -12.92773 -12.89653 -12.19221 -12.14515 -11.78133 -11.42331 -11.28915 -11.02219 -10.81544 -10.19875 -9.90663 -9.73668 -9.36971 -9.23619 -8.88519 -8.76577 -8.62920 -8.12184 -6.22078 -4.24402 0.73991 1.28044 1.62412 3.22362 3.34237 3.39053 3.75816 3.90629 3.99753 4.16655 4.30770 4.41529 4.68787 4.83672 5.12965 5.18746 5.28396 5.41643 5.50411 5.56393 6.04535 6.19963 6.32361 6.40609 6.51286 6.57321 6.86941 7.20290 7.28952 7.44404 7.51782 7.95179 8.15115 8.52515 8.74940 8.93627 9.39095 10.90153 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.031775 B = 0.006086 C = 0.005498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.975936 B = 4599.668330 C = 5091.472177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.238 3.762 3 H 0.047 0.953 4 C -0.535 4.535 5 H 0.080 0.920 6 C 0.078 3.922 7 N -0.892 5.892 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.263 1.263 12 N -0.693 5.693 13 C 0.528 3.472 14 O -0.548 6.548 15 C -0.153 4.153 16 C -0.057 4.057 17 C 0.134 3.866 18 C 0.057 3.943 19 N -0.440 5.440 20 C 0.035 3.965 21 C 0.064 3.936 22 N -0.408 5.408 23 H 0.052 0.948 24 H 0.046 0.954 25 H 0.036 0.964 26 H 0.267 0.733 27 H 0.396 0.604 28 H 0.138 0.862 29 H 0.147 0.853 30 H 0.164 0.836 31 H 0.163 0.837 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.997 2.403 -17.493 17.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.134 3.866 3 H 0.064 0.936 4 C -0.573 4.573 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.529 5.529 8 Si 0.716 3.284 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.188 1.188 12 N -0.341 5.341 13 C 0.314 3.686 14 O -0.428 6.428 15 C -0.176 4.176 16 C -0.078 4.078 17 C -0.005 4.005 18 C -0.104 4.104 19 N -0.154 5.154 20 C -0.124 4.124 21 C -0.098 4.098 22 N -0.123 5.123 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.077 0.923 27 H 0.229 0.771 28 H 0.155 0.845 29 H 0.165 0.835 30 H 0.181 0.819 31 H 0.180 0.820 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.212 3.249 -17.276 17.621 hybrid contribution -0.515 0.222 0.520 0.765 sum -1.727 3.471 -16.756 17.199 Atomic orbital electron populations 1.22420 0.99234 1.00820 0.99220 1.19072 0.90161 0.94549 0.82772 0.93566 1.21050 1.33249 1.14422 0.88567 0.90181 1.24829 0.95487 0.96682 0.95534 1.69870 1.44908 1.40128 0.98037 0.86866 0.80552 0.83617 0.77364 1.20306 1.22139 1.18826 1.46109 1.64436 1.13706 1.09807 1.18407 0.78939 0.87185 0.84040 1.90745 1.51173 1.16004 1.84847 1.23392 1.00731 1.00123 0.93313 1.21912 0.96659 0.91479 0.97728 1.20758 0.90989 0.94939 0.93779 1.23609 1.00887 0.88335 0.97550 1.68304 1.11783 1.23999 1.11303 1.23669 0.90612 1.00387 0.97751 1.23602 1.01488 0.89047 0.95637 1.68529 1.11297 1.24832 1.07667 0.92858 0.93591 0.94512 0.92282 0.77080 0.84454 0.83513 0.81887 0.81968 0.81937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 8.96 37.16 0.33 -3.31 16 2 C 0.24 5.77 2.15 -69.09 -0.15 5.62 16 3 H 0.05 1.25 6.63 -51.93 -0.34 0.91 16 4 C -0.53 -14.60 9.31 -34.44 -0.32 -14.92 16 5 H 0.08 2.28 7.98 -52.49 -0.42 1.86 16 6 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 7 N -0.89 -26.60 13.96 55.43 0.77 -25.83 16 8 Si 0.89 22.14 24.37 -169.99 -4.14 18.00 16 9 H -0.28 -6.68 6.87 56.52 0.39 -6.29 16 10 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 11 H -0.26 -6.60 6.53 56.52 0.37 -6.24 16 12 N -0.69 -13.91 5.07 -56.26 -0.28 -14.20 16 13 C 0.53 10.03 7.56 -12.86 -0.10 9.93 16 14 O -0.55 -12.23 12.90 5.22 0.07 -12.16 16 15 C -0.15 -2.06 10.07 -37.46 -0.38 -2.44 16 16 C -0.06 -0.68 9.89 -37.14 -0.37 -1.05 16 17 C 0.13 1.98 4.39 -82.96 -0.36 1.62 16 18 C 0.06 0.78 10.98 -16.90 -0.19 0.60 16 19 N -0.44 -6.42 10.49 -12.64 -0.13 -6.56 16 20 C 0.04 0.46 11.22 -17.24 -0.19 0.27 16 21 C 0.06 0.89 11.22 -17.39 -0.20 0.69 16 22 N -0.41 -6.66 8.89 -9.72 -0.09 -6.74 16 23 H 0.05 1.15 8.14 -51.92 -0.42 0.73 16 24 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.40 6.89 8.52 -40.82 -0.35 6.54 16 28 H 0.14 1.34 8.06 -52.48 -0.42 0.91 16 29 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16 30 H 0.16 1.74 8.06 -52.48 -0.42 1.32 16 31 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.16 1.77 8.06 -52.48 -0.42 1.34 16 LS Contribution 278.67 15.07 4.20 4.20 Total: -1.00 -34.69 278.67 -5.04 -39.74 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -3.42 Total: 4.42 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -2.01 Total: -0.87 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: 0.27 Total: -53.32 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.07 Total: -12.16 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.14 Total: 18.00 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -34.69 -5.04 -39.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491827417.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.216 kcal (2) G-P(sol) polarization free energy of solvation -34.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds