Wall clock time and date at job start Thu Apr 9 2020 12:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99834 * 2 1 4 4 H 1.48495 * 109.47303 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47010 * 299.99819 * 3 2 1 6 6 H 1.48503 * 109.47179 * 59.99740 * 3 2 1 7 7 C 1.37874 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99949 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00214 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47134 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.46876 * 179.97438 * 10 9 7 12 12 C 1.34773 * 119.99861 * 179.97438 * 11 10 9 13 13 O 1.21638 * 119.99642 * 0.02562 * 12 11 10 14 14 C 1.46876 * 120.00223 * 180.02562 * 12 11 10 15 15 C 1.34495 * 120.00314 * 201.23986 * 14 12 11 16 16 C 1.47541 * 119.99819 * 29.52787 * 15 14 12 17 17 C 1.39984 * 120.58263 * 187.13975 * 16 15 14 18 18 C 1.38492 * 118.24418 * 179.79879 * 17 16 15 19 19 N 1.32335 * 119.19048 * 0.47794 * 18 17 16 20 20 C 1.31880 * 121.11530 * 359.74297 * 19 18 17 21 21 N 1.31575 * 121.93804 * 0.02562 * 20 19 18 22 22 H 0.97000 * 120.00224 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47182 * 59.98919 * 9 7 2 24 24 H 1.09000 * 109.46734 * 299.99617 * 9 7 2 25 25 H 1.09001 * 109.46950 * 59.99854 * 10 9 7 26 26 H 1.09000 * 109.47195 * 299.99576 * 10 9 7 27 27 H 0.96997 * 119.99841 * 359.97438 * 11 10 9 28 28 H 1.07999 * 119.99643 * 21.23506 * 14 12 11 29 29 H 1.08001 * 120.00486 * 209.52481 * 15 14 12 30 30 H 1.07997 * 120.87128 * 0.02562 * 17 16 15 31 31 H 1.07997 * 120.41049 * 180.21856 * 18 17 16 32 32 H 1.08000 * 119.03411 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5128 -4.9308 0.0012 12 6 2.1867 -6.0980 0.0007 13 8 3.4031 -6.0979 0.0003 14 6 1.4524 -7.3700 0.0008 15 6 2.0565 -8.4953 0.4224 16 6 3.1207 -8.4237 1.4418 17 6 3.8593 -9.5633 1.7816 18 6 4.8496 -9.4402 2.7418 19 7 5.0567 -8.2622 3.3081 20 6 4.3404 -7.2079 2.9694 21 7 3.3921 -7.2737 2.0598 22 1 -0.4850 0.8400 -0.0004 23 1 0.6246 -2.5571 -0.8895 24 1 0.6241 -2.5567 0.8903 25 1 2.8720 -3.6042 0.8905 26 1 2.8720 -3.6043 -0.8895 27 1 0.5429 -4.9308 0.0019 28 1 0.4273 -7.4017 -0.3376 29 1 1.7627 -9.4513 0.0147 30 1 3.6643 -10.5125 1.3048 31 1 5.4430 -10.2960 3.0280 32 1 4.5376 -6.2628 3.4535 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492537943.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:20:38 Heat of formation + Delta-G solvation = 13.974553 kcal Electronic energy + Delta-G solvation = -16722.569579 eV Core-core repulsion = 13876.236687 eV Total energy + Delta-G solvation = -2846.332892 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.84460 -40.37114 -36.67535 -35.60163 -34.75280 -33.68182 -32.32564 -31.26554 -27.24370 -25.86272 -25.15760 -23.54746 -22.44920 -20.67278 -18.89793 -18.48414 -18.20201 -17.14672 -16.52645 -16.38414 -16.25890 -16.12107 -15.67677 -15.14996 -14.77187 -14.39613 -14.28043 -13.99519 -13.64872 -13.19610 -12.94659 -12.52644 -12.22989 -12.13877 -11.74077 -11.64606 -11.44407 -10.98469 -10.71364 -10.61007 -10.20942 -9.88346 -9.59716 -8.24782 -6.35201 -0.64866 0.12028 0.91950 1.39940 1.40697 1.54151 2.33996 2.40504 2.58007 2.99341 3.09683 3.14928 3.29152 3.56737 4.04099 4.09451 4.23345 4.47993 4.51640 4.53500 4.62579 4.79161 4.86964 5.09798 5.22364 5.34960 5.53205 5.55790 5.59245 5.80548 6.13630 6.17121 6.77261 6.80043 7.18789 7.34125 7.48421 8.87355 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.037386 B = 0.004221 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.760079 B = 6632.002211 C = 7162.466021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.547 4.547 8 H 0.055 0.945 9 C 0.024 3.976 10 C 0.148 3.852 11 N -0.718 5.718 12 C 0.536 3.464 13 O -0.575 6.575 14 C -0.160 4.160 15 C -0.049 4.049 16 C 0.159 3.841 17 C -0.197 4.197 18 C 0.131 3.869 19 N -0.543 5.543 20 C 0.275 3.725 21 N -0.514 5.514 22 H 0.266 0.734 23 H 0.009 0.991 24 H 0.007 0.993 25 H 0.038 0.962 26 H 0.040 0.960 27 H 0.408 0.592 28 H 0.183 0.817 29 H 0.204 0.796 30 H 0.194 0.806 31 H 0.206 0.794 32 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.314 -22.403 2.070 22.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.585 4.585 8 H 0.074 0.926 9 C -0.014 4.014 10 C 0.024 3.976 11 N -0.368 5.368 12 C 0.326 3.674 13 O -0.455 6.455 14 C -0.183 4.183 15 C -0.068 4.068 16 C 0.016 3.984 17 C -0.218 4.218 18 C -0.034 4.034 19 N -0.258 5.258 20 C -0.014 4.014 21 N -0.228 5.228 22 H 0.075 0.925 23 H 0.028 0.972 24 H 0.025 0.975 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.244 0.756 28 H 0.200 0.800 29 H 0.221 0.779 30 H 0.211 0.789 31 H 0.223 0.777 32 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 3.222 -21.390 2.526 21.778 hybrid contribution -0.207 0.747 -0.289 0.827 sum 3.015 -20.643 2.237 20.981 Atomic orbital electron populations 1.70063 1.07503 1.27944 1.51070 1.25864 0.95810 1.03054 0.94373 0.85397 0.78877 0.78766 0.78006 1.19154 1.20011 1.20120 1.21493 0.93459 0.92082 1.51482 0.92633 1.19124 0.94201 0.91812 0.96227 1.21066 0.94859 0.82680 0.99044 1.46093 1.10786 1.05689 1.74265 1.19143 0.87511 0.85150 0.75594 1.90718 1.15569 1.88168 1.51055 1.23535 1.00878 0.90962 1.02910 1.22738 0.91445 1.00734 0.91892 1.21149 0.94065 0.88965 0.94185 1.23432 0.96792 1.01501 1.00118 1.23892 0.93904 0.95445 0.90139 1.68373 1.27718 1.01178 1.28523 1.24908 0.87901 0.97795 0.90793 1.68630 1.18581 1.27944 1.07668 0.92505 0.97238 0.97511 0.94399 0.94182 0.75633 0.79979 0.77871 0.78855 0.77736 0.79479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.10 13.29 21.45 0.28 -54.82 16 2 C 0.01 0.44 5.46 84.65 0.46 0.90 16 3 Si 0.97 44.51 29.54 68.60 2.03 46.53 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.55 -31.50 9.11 25.60 0.23 -31.27 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.02 1.24 5.09 29.85 0.15 1.40 16 10 C 0.15 6.73 5.61 86.38 0.48 7.21 16 11 N -0.72 -26.18 5.55 -466.92 -2.59 -28.78 16 12 C 0.54 18.64 6.59 86.50 0.57 19.21 16 13 O -0.57 -24.69 14.09 -4.15 -0.06 -24.75 16 14 C -0.16 -3.52 9.92 23.68 0.23 -3.28 16 15 C -0.05 -0.87 9.79 23.87 0.23 -0.64 16 16 C 0.16 3.89 6.11 41.79 0.26 4.15 16 17 C -0.20 -3.25 9.94 22.75 0.23 -3.03 16 18 C 0.13 2.42 11.30 84.68 0.96 3.37 16 19 N -0.54 -14.43 10.42 -200.23 -2.09 -16.51 16 20 C 0.27 8.43 12.28 180.92 2.22 10.65 16 21 N -0.51 -16.74 6.88 -189.49 -1.30 -18.04 16 22 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 23 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 24 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 25 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.41 12.62 8.45 -92.71 -0.78 11.83 16 28 H 0.18 2.41 8.06 -2.91 -0.02 2.39 16 29 H 0.20 1.27 8.06 -2.91 -0.02 1.25 16 30 H 0.19 1.19 8.06 -2.91 -0.02 1.17 16 31 H 0.21 1.88 8.06 -2.91 -0.02 1.86 16 32 H 0.19 5.44 8.06 -2.91 -0.02 5.42 16 Total: -1.00 -79.20 289.66 2.65 -76.55 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.35 Total: 11.13 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 6.03 Total: 8.68 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -5.70 Total: -118.15 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.06 Total: -24.75 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -79.20 2.65 -76.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492537943.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.528 kcal (2) G-P(sol) polarization free energy of solvation -79.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds