Wall clock time and date at job start Thu Apr 9 2020 12:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47502 * 2 1 4 4 C 1.36540 * 119.99274 * 270.66909 * 3 2 1 5 5 H 1.08005 * 119.99717 * 142.63945 * 4 3 2 6 6 C 1.39262 * 120.00280 * 322.63222 * 4 3 2 7 7 N 1.31227 * 119.99900 * 335.04212 * 6 4 3 8 8 Si 1.86796 * 119.99698 * 155.04473 * 6 4 3 9 9 H 1.48501 * 109.47348 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47172 * 120.00021 * 8 6 4 11 11 H 1.48502 * 109.47107 * 240.00057 * 8 6 4 12 12 C 1.34771 * 120.00128 * 90.66582 * 3 2 1 13 13 O 1.21720 * 119.99803 * 180.02562 * 12 3 2 14 14 C 1.46592 * 120.00165 * 0.02562 * 12 3 2 15 15 C 1.34749 * 120.00155 * 188.81112 * 14 12 3 16 16 C 1.47401 * 120.00221 * 30.90526 * 15 14 12 17 17 C 1.40054 * 120.59243 * 185.10756 * 16 15 14 18 18 C 1.38435 * 118.24467 * 179.73608 * 17 16 15 19 19 N 1.32377 * 119.19303 * 0.54134 * 18 17 16 20 20 C 1.31877 * 121.12890 * 359.72127 * 19 18 17 21 21 N 1.31561 * 121.94746 * 359.97438 * 20 19 18 22 22 H 1.08998 * 109.47385 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47349 * 300.00842 * 1 2 3 24 24 H 1.09007 * 109.46535 * 60.00320 * 1 2 3 25 25 H 1.08999 * 109.47349 * 239.99158 * 2 1 3 26 26 H 1.09010 * 109.47048 * 119.99695 * 2 1 3 27 27 H 0.97003 * 119.99559 * 179.97438 * 7 6 4 28 28 H 1.07996 * 119.99879 * 8.80829 * 14 12 3 29 29 H 1.08005 * 120.00024 * 210.90892 * 15 14 12 30 30 H 1.08006 * 120.87416 * 359.97438 * 17 16 15 31 31 H 1.07993 * 120.40444 * 180.27911 * 18 17 16 32 32 H 1.08010 * 119.02542 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2330 2.0293 -1.1825 5 1 2.0015 3.0805 -1.2719 6 6 2.7504 1.3351 -2.2732 7 7 3.4732 0.2567 -2.0817 8 14 2.4155 1.9390 -4.0088 9 1 1.5818 3.1667 -3.9536 10 1 3.7026 2.2453 -4.6833 11 1 1.6965 0.8856 -4.7694 12 6 2.2559 2.0120 1.1671 13 8 2.6612 3.1597 1.1670 14 6 2.0260 1.3160 2.4365 15 6 2.0908 1.9950 3.5986 16 6 1.7146 3.4195 3.6419 17 6 1.8779 4.1645 4.8166 18 6 1.5138 5.5000 4.8013 19 7 1.0178 6.0214 3.6902 20 6 0.8712 5.2921 2.6013 21 7 1.2079 4.0209 2.5642 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.8332 -0.2271 -2.8414 28 1 1.8046 0.2589 2.4404 29 1 2.4185 1.4954 4.4984 30 1 2.2808 3.7099 5.7097 31 1 1.6291 6.1081 5.6863 32 1 0.4625 5.7521 1.7136 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492545524.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:20:41 Heat of formation + Delta-G solvation = 48.059210 kcal Electronic energy + Delta-G solvation = -17698.031951 eV Core-core repulsion = 14853.177080 eV Total energy + Delta-G solvation = -2844.854870 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.68857 -40.18752 -36.96832 -35.33659 -34.07246 -33.47219 -31.87650 -31.10826 -27.55099 -25.70901 -25.01281 -23.97653 -22.79919 -19.95333 -18.83007 -18.50260 -17.76072 -17.32595 -16.70087 -16.25013 -15.82237 -15.55100 -15.37943 -14.77567 -14.47628 -14.40701 -14.01886 -13.58162 -13.51613 -13.29143 -12.86364 -12.63603 -12.29666 -12.11998 -11.99145 -11.68967 -11.57371 -10.94715 -10.77263 -10.21070 -9.99225 -9.34327 -9.26127 -8.35270 -5.97098 -0.54776 0.25426 1.06932 1.37715 1.39951 1.53712 2.29880 2.62907 3.09260 3.19024 3.24803 3.32948 3.38973 3.68903 4.15593 4.22830 4.31321 4.34123 4.55657 4.66710 4.69204 4.83381 4.91085 5.03646 5.21706 5.31021 5.37538 5.48205 5.57643 5.66455 6.25011 6.28980 6.63887 7.30634 7.35209 7.57666 8.29302 8.66149 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.030372 B = 0.006727 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.689089 B = 4161.211342 C = 4641.523035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.094 3.906 3 N -0.444 5.444 4 C -0.332 4.332 5 H 0.057 0.943 6 C 0.006 3.994 7 N -0.880 5.880 8 Si 0.974 3.026 9 H -0.274 1.274 10 H -0.279 1.279 11 H -0.261 1.261 12 C 0.468 3.532 13 O -0.600 6.600 14 C -0.148 4.148 15 C -0.083 4.083 16 C 0.164 3.836 17 C -0.204 4.204 18 C 0.127 3.873 19 N -0.545 5.545 20 C 0.264 3.736 21 N -0.487 5.487 22 H 0.085 0.915 23 H 0.048 0.952 24 H 0.036 0.964 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.274 0.726 28 H 0.159 0.841 29 H 0.194 0.806 30 H 0.190 0.810 31 H 0.207 0.793 32 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.904 -1.148 12.425 13.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 N -0.162 5.162 4 C -0.460 4.460 5 H 0.075 0.925 6 C -0.198 4.198 7 N -0.517 5.517 8 Si 0.797 3.203 9 H -0.198 1.198 10 H -0.205 1.205 11 H -0.185 1.185 12 C 0.260 3.740 13 O -0.485 6.485 14 C -0.172 4.172 15 C -0.104 4.104 16 C 0.021 3.979 17 C -0.225 4.225 18 C -0.039 4.039 19 N -0.260 5.260 20 C -0.025 4.025 21 N -0.201 5.201 22 H 0.104 0.896 23 H 0.067 0.933 24 H 0.056 0.944 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.176 0.824 29 H 0.211 0.789 30 H 0.207 0.793 31 H 0.223 0.777 32 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -4.986 -0.328 11.434 12.478 hybrid contribution 0.462 0.010 -0.689 0.830 sum -4.523 -0.318 10.745 11.663 Atomic orbital electron populations 1.22046 0.95501 1.02183 1.00965 1.21670 0.94113 0.83816 1.03294 1.43675 1.55045 1.13157 1.04371 1.19254 1.42512 0.95615 0.88664 0.92540 1.26096 0.93410 0.96813 1.03466 1.69969 1.28681 1.19900 1.33114 0.85197 0.78266 0.78779 0.78015 1.19824 1.20485 1.18549 1.19177 0.82281 0.87447 0.85103 1.90581 1.51076 1.19479 1.87356 1.23674 0.98965 1.01906 0.92619 1.22572 0.98256 0.89988 0.99561 1.21069 0.92249 0.95456 0.89079 1.23365 1.02330 0.96224 1.00608 1.23802 0.90249 0.93374 0.96447 1.68337 1.16016 1.40440 1.01196 1.24888 0.93858 0.87473 0.96252 1.68976 1.09861 1.12734 1.28543 0.89614 0.93312 0.94448 0.90371 0.90553 0.91574 0.82394 0.78927 0.79324 0.77676 0.79955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.31 10.24 71.98 0.74 -4.57 16 2 C 0.09 4.04 5.52 86.38 0.48 4.51 16 3 N -0.44 -23.24 2.51 -640.21 -1.60 -24.85 16 4 C -0.33 -19.32 8.86 84.21 0.75 -18.57 16 5 H 0.06 3.60 7.79 -2.91 -0.02 3.57 16 6 C 0.01 0.33 4.86 85.03 0.41 0.74 16 7 N -0.88 -47.95 11.67 21.71 0.25 -47.69 16 8 Si 0.97 43.07 29.62 68.60 2.03 45.10 16 9 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 12 C 0.47 23.78 6.84 86.42 0.59 24.37 16 13 O -0.60 -35.09 13.01 -4.41 -0.06 -35.15 16 14 C -0.15 -5.48 9.14 23.65 0.22 -5.26 16 15 C -0.08 -2.53 9.82 23.88 0.23 -2.29 16 16 C 0.16 5.72 6.15 41.76 0.26 5.97 16 17 C -0.20 -5.06 9.94 22.76 0.23 -4.83 16 18 C 0.13 3.19 11.30 84.66 0.96 4.15 16 19 N -0.54 -18.09 10.42 -200.25 -2.09 -20.18 16 20 C 0.26 10.23 12.27 180.93 2.22 12.45 16 21 N -0.49 -20.86 6.39 -189.52 -1.21 -22.07 16 22 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 23 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 25 H 0.08 3.72 5.64 -2.39 -0.01 3.71 16 26 H 0.08 2.80 5.97 -2.38 -0.01 2.78 16 27 H 0.27 13.84 8.30 -92.71 -0.77 13.07 16 28 H 0.16 4.69 6.13 -2.91 -0.02 4.67 16 29 H 0.19 3.53 8.06 -2.91 -0.02 3.50 16 30 H 0.19 2.71 8.06 -2.91 -0.02 2.68 16 31 H 0.21 3.06 8.06 -2.91 -0.02 3.04 16 32 H 0.18 6.71 8.06 -2.91 -0.02 6.68 16 Total: -1.00 -77.55 280.40 5.53 -72.01 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 1.13 Total: 16.16 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 7.08 Total: 16.67 kcal Atomic # 7 Polarization: -110.14 SS G_CDS: -4.65 Total: -114.79 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -0.06 Total: -35.15 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -77.55 5.53 -72.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492545524.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.074 kcal (2) G-P(sol) polarization free energy of solvation -77.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds