Wall clock time and date at job start Thu Apr 9 2020 12:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47351 * 2 1 4 4 N 1.27941 * 120.00255 * 124.99924 * 3 2 1 5 5 Si 1.86802 * 120.00024 * 305.00085 * 3 2 1 6 6 H 1.48495 * 109.47297 * 59.99946 * 5 3 2 7 7 H 1.48501 * 109.47183 * 180.02562 * 5 3 2 8 8 H 1.48509 * 109.46703 * 299.99829 * 5 3 2 9 9 N 1.46505 * 109.46656 * 119.99975 * 2 1 3 10 10 C 1.46494 * 120.00169 * 299.99735 * 9 2 1 11 11 C 1.34774 * 119.99742 * 120.00297 * 9 2 1 12 12 O 1.21642 * 120.00239 * 359.97438 * 11 9 2 13 13 C 1.46877 * 119.99701 * 179.97438 * 11 9 2 14 14 C 1.34503 * 119.99873 * 188.42861 * 13 11 9 15 15 C 1.47542 * 119.99965 * 31.22247 * 14 13 11 16 16 C 1.39974 * 120.58401 * 185.51164 * 15 14 13 17 17 C 1.38498 * 118.24199 * 179.75441 * 16 15 14 18 18 N 1.32332 * 119.19176 * 0.51939 * 17 16 15 19 19 C 1.31883 * 121.11177 * 359.72468 * 18 17 16 20 20 N 1.31566 * 121.94311 * 0.02562 * 19 18 17 21 21 H 1.09001 * 109.47473 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47147 * 300.00111 * 1 2 3 23 23 H 1.09002 * 109.47107 * 60.00112 * 1 2 3 24 24 H 1.08995 * 109.47129 * 239.99751 * 2 1 3 25 25 H 0.97002 * 120.00565 * 180.02562 * 4 3 2 26 26 H 1.09006 * 109.46991 * 270.00172 * 10 9 2 27 27 H 1.09005 * 109.47253 * 30.00139 * 10 9 2 28 28 H 1.08994 * 109.47533 * 150.00266 * 10 9 2 29 29 H 1.08001 * 120.00525 * 8.42935 * 13 11 9 30 30 H 1.07996 * 120.00423 * 211.22331 * 14 13 11 31 31 H 1.08003 * 120.87902 * 359.97438 * 16 15 14 32 32 H 1.08007 * 120.40431 * 180.25942 * 17 16 15 33 33 H 1.08002 * 119.02790 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.8448 1.8120 0.9076 5 14 1.4689 2.6107 -1.3252 6 1 -0.0081 2.7525 -1.2676 7 1 2.1028 3.9351 -1.1033 8 1 1.8647 2.0902 -2.6585 9 7 2.0182 -0.6906 1.1962 10 6 1.6643 -0.1901 2.5268 11 6 2.7931 -1.7864 1.0726 12 8 3.0867 -2.2023 -0.0322 13 6 3.2830 -2.4785 2.2719 14 6 4.1898 -3.4651 2.1557 15 6 5.1807 -3.4314 1.0631 16 6 6.0548 -4.5058 0.8610 17 6 6.9621 -4.4252 -0.1823 18 7 6.9796 -3.3406 -0.9401 19 6 6.1460 -2.3425 -0.7207 20 7 5.2632 -2.3744 0.2543 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 3.1679 2.7267 0.9079 26 1 2.4157 0.5273 2.8568 27 1 0.6903 0.2974 2.4844 28 1 1.6236 -1.0225 3.2292 29 1 2.9152 -2.1952 3.2470 30 1 4.1926 -4.2820 2.8621 31 1 6.0201 -5.3762 1.4995 32 1 7.6499 -5.2360 -0.3724 33 1 6.1892 -1.4732 -1.3603 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493228996.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:20:57 Heat of formation + Delta-G solvation = 101.069553 kcal Electronic energy + Delta-G solvation = -18170.480021 eV Core-core repulsion = 15314.268113 eV Total energy + Delta-G solvation = -2856.211909 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.87986 -40.81736 -38.04246 -35.66766 -35.23957 -33.70226 -32.69306 -31.57444 -27.73140 -26.49414 -25.28855 -24.98140 -23.27094 -20.64367 -19.62740 -19.00964 -18.19077 -17.82927 -17.28970 -16.53342 -16.37714 -15.99290 -15.75588 -15.38388 -14.76202 -14.68160 -14.36559 -14.32746 -13.96747 -13.77079 -13.54449 -13.22059 -12.88029 -12.54585 -12.44306 -12.06732 -12.04738 -11.75217 -11.34514 -11.06536 -10.66829 -10.27155 -10.07282 -9.56311 -9.23440 -0.71830 0.09246 0.80854 0.86213 1.03576 1.39264 1.71219 1.83188 2.27567 2.43374 2.97131 3.10906 3.27833 3.43976 3.54494 3.82413 4.05761 4.18208 4.20204 4.27527 4.32416 4.46402 4.58320 4.70461 4.76490 4.79608 4.85647 4.95523 5.08732 5.16200 5.20095 5.28016 5.49343 5.69351 6.10925 6.56499 6.89636 7.17018 7.41262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.159 3.841 3 C -0.023 4.023 4 N -0.634 5.634 5 Si 0.971 3.029 6 H -0.220 1.220 7 H -0.258 1.258 8 H -0.251 1.251 9 N -0.590 5.590 10 C 0.079 3.921 11 C 0.536 3.464 12 O -0.558 6.558 13 C -0.162 4.162 14 C -0.053 4.053 15 C 0.161 3.839 16 C -0.202 4.202 17 C 0.128 3.872 18 N -0.547 5.547 19 C 0.270 3.730 20 N -0.486 5.486 21 H 0.069 0.931 22 H 0.078 0.922 23 H 0.084 0.916 24 H 0.100 0.900 25 H 0.340 0.660 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.176 0.824 30 H 0.193 0.807 31 H 0.186 0.814 32 H 0.197 0.803 33 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.792 -0.363 5.142 6.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.054 3.946 3 C -0.271 4.271 4 N -0.248 5.248 5 Si 0.786 3.214 6 H -0.142 1.142 7 H -0.182 1.182 8 H -0.175 1.175 9 N -0.323 5.323 10 C -0.063 4.063 11 C 0.327 3.673 12 O -0.437 6.437 13 C -0.185 4.185 14 C -0.073 4.073 15 C 0.017 3.983 16 C -0.223 4.223 17 C -0.037 4.037 18 N -0.262 5.262 19 C -0.018 4.018 20 N -0.200 5.200 21 H 0.088 0.912 22 H 0.096 0.904 23 H 0.103 0.897 24 H 0.118 0.882 25 H 0.157 0.843 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.106 0.894 29 H 0.193 0.807 30 H 0.210 0.790 31 H 0.204 0.796 32 H 0.214 0.786 33 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -3.424 0.370 4.172 5.410 hybrid contribution 0.242 0.070 -0.041 0.255 sum -3.182 0.441 4.131 5.233 Atomic orbital electron populations 1.22122 0.91556 1.03765 1.04165 1.20419 0.95562 0.88561 0.90015 1.31032 0.94187 1.01940 0.99984 1.68204 1.08455 1.22800 1.25317 0.85226 0.82669 0.76316 0.77150 1.14167 1.18199 1.17496 1.47605 1.50614 1.26404 1.07628 1.21958 1.01592 1.00512 0.82266 1.18867 0.78270 0.80311 0.89899 1.90756 1.57649 1.66434 1.28866 1.23604 1.00096 0.96290 0.98555 1.22709 0.91631 0.97650 0.95297 1.21072 0.94461 0.89893 0.92862 1.23411 0.97390 1.00786 1.00732 1.23769 0.95589 0.95087 0.89285 1.68352 1.25016 1.02880 1.29940 1.24961 0.86515 0.96686 0.93651 1.68818 1.18474 1.28004 1.04733 0.91241 0.90352 0.89707 0.88188 0.84287 0.92096 0.90367 0.89437 0.80681 0.79025 0.79640 0.78606 0.79235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.52 8.73 71.98 0.63 1.14 16 2 C 0.16 0.38 2.77 44.24 0.12 0.50 16 3 C -0.02 -0.02 5.16 88.67 0.46 0.44 16 4 N -0.63 -1.80 11.38 24.11 0.27 -1.53 16 5 Si 0.97 -1.93 27.83 68.60 1.91 -0.02 16 6 H -0.22 0.90 7.03 99.48 0.70 1.59 16 7 H -0.26 0.12 7.11 99.48 0.71 0.82 16 8 H -0.25 -0.21 7.11 99.48 0.71 0.50 16 9 N -0.59 -1.91 2.47 -831.34 -2.05 -3.96 16 10 C 0.08 -0.23 9.04 127.77 1.16 0.93 16 11 C 0.54 4.09 6.90 86.50 0.60 4.69 16 12 O -0.56 -8.60 12.51 -4.16 -0.05 -8.65 16 13 C -0.16 -0.10 9.14 23.68 0.22 0.11 16 14 C -0.05 0.02 9.82 23.87 0.23 0.25 16 15 C 0.16 1.04 6.13 41.79 0.26 1.30 16 16 C -0.20 -0.28 9.94 22.75 0.23 -0.05 16 17 C 0.13 0.50 11.30 84.68 0.96 1.46 16 18 N -0.55 -5.78 10.42 -200.22 -2.09 -7.86 16 19 C 0.27 3.22 12.27 180.93 2.22 5.44 16 20 N -0.49 -6.02 6.44 -189.49 -1.22 -7.24 16 21 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 22 H 0.08 -0.44 6.66 -2.38 -0.02 -0.46 16 23 H 0.08 -0.49 6.59 -2.39 -0.02 -0.51 16 24 H 0.10 0.67 6.90 -2.39 -0.02 0.66 16 25 H 0.34 0.05 8.23 -92.71 -0.76 -0.72 16 26 H 0.06 -0.03 7.12 -2.38 -0.02 -0.04 16 27 H 0.08 -0.42 6.43 -2.38 -0.02 -0.43 16 28 H 0.09 -0.65 6.01 -2.39 -0.01 -0.66 16 29 H 0.18 -1.22 6.16 -2.91 -0.02 -1.23 16 30 H 0.19 -1.86 8.06 -2.91 -0.02 -1.88 16 31 H 0.19 -1.38 8.06 -2.91 -0.02 -1.40 16 32 H 0.20 -0.69 8.06 -2.91 -0.02 -0.72 16 33 H 0.19 1.70 8.06 -2.91 -0.02 1.68 16 Total: 0.00 -21.01 277.98 4.97 -16.04 By element: Atomic # 1 Polarization: -4.10 SS G_CDS: 1.12 Total: -2.98 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: 7.07 Total: 16.21 kcal Atomic # 7 Polarization: -15.52 SS G_CDS: -5.09 Total: -20.60 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: -0.05 Total: -8.65 kcal Atomic # 14 Polarization: -1.93 SS G_CDS: 1.91 Total: -0.02 kcal Total: -21.01 4.97 -16.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493228996.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.110 kcal (2) G-P(sol) polarization free energy of solvation -21.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds