Wall clock time and date at job start Thu Apr 9 2020 12:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47257 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00113 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99956 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99966 * 179.97438 * 13 11 10 15 15 H 1.08997 * 110.43597 * 327.54061 * 14 13 11 16 16 C 1.54887 * 110.48748 * 90.22323 * 14 13 11 17 17 C 1.54891 * 102.75073 * 156.62284 * 16 14 13 18 18 C 1.54272 * 104.19567 * 322.05851 * 17 16 14 19 19 F 1.39902 * 110.03211 * 264.32667 * 18 17 16 20 20 F 1.39897 * 110.07353 * 142.91817 * 18 17 16 21 21 C 1.53878 * 106.59647 * 23.60790 * 18 17 16 22 22 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 23 23 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 24 24 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 25 25 H 1.09004 * 109.47330 * 299.99977 * 10 9 7 26 26 H 1.09005 * 109.47124 * 59.99773 * 10 9 7 27 27 H 0.96999 * 120.00050 * 0.02562 * 13 11 10 28 28 H 1.08997 * 110.75984 * 274.93404 * 16 14 13 29 29 H 1.08998 * 110.75302 * 38.30777 * 16 14 13 30 30 H 1.09003 * 110.48757 * 203.38643 * 17 16 14 31 31 H 1.08996 * 110.60026 * 80.78995 * 17 16 14 32 32 H 1.08995 * 110.03450 * 240.71557 * 21 18 17 33 33 H 1.09003 * 110.07195 * 119.30605 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2452 -3.6621 -0.0122 11 6 1.4916 -4.9672 -0.0116 12 8 0.2789 -4.9672 -0.0061 13 7 2.1655 -6.1344 -0.0171 14 6 1.4330 -7.4031 -0.0160 15 1 0.4990 -7.3028 0.5370 16 6 1.1597 -7.8726 -1.4665 17 6 0.9697 -9.4009 -1.3010 18 6 2.0057 -9.7970 -0.2287 19 9 3.1772 -10.2557 -0.8405 20 9 1.4794 -10.7908 0.6035 21 6 2.3002 -8.5268 0.5883 22 1 -0.4849 0.8401 0.0041 23 1 0.6280 -2.5591 0.8866 24 1 0.6206 -2.5548 -0.8933 25 1 2.8685 -3.6025 -0.9044 26 1 2.8753 -3.6063 0.8756 27 1 3.1355 -6.1344 -0.0211 28 1 0.2532 -7.4109 -1.8577 29 1 2.0129 -7.6568 -2.1095 30 1 1.1768 -9.9149 -2.2397 31 1 -0.0399 -9.6269 -0.9579 32 1 3.3559 -8.2677 0.5082 33 1 2.0328 -8.6837 1.6333 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589708279.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:21:15 Heat of formation + Delta-G solvation = -163.135531 kcal Electronic energy + Delta-G solvation = -17723.750760 eV Core-core repulsion = 14419.048612 eV Total energy + Delta-G solvation = -3304.702148 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.112 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.16379 -47.23360 -39.56362 -37.28693 -33.47626 -33.27953 -30.97671 -29.25943 -27.37308 -25.42727 -22.16236 -21.36131 -20.86788 -19.79093 -17.87932 -17.15217 -16.98857 -16.10099 -15.85510 -15.56769 -14.88878 -14.47370 -14.45453 -14.25741 -13.61407 -13.54372 -13.29550 -12.69789 -12.59378 -12.18543 -12.03934 -11.96762 -11.72585 -11.31194 -11.17971 -10.94515 -10.88987 -10.61042 -9.98719 -9.70088 -9.22800 -9.05822 -8.91710 -8.33832 -5.98004 -4.02502 3.12397 3.19600 3.32223 3.38558 3.41022 3.56128 3.77283 3.89363 4.15343 4.46233 4.75676 4.81516 4.87947 5.04102 5.08167 5.31170 5.37112 5.47238 5.51396 5.69823 5.85415 5.95686 6.18690 6.20239 6.62124 6.85465 7.71961 7.78406 7.83277 8.04711 8.36162 8.69739 9.05946 9.61248 11.12938 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.064834 B = 0.003707 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.767500 B = 7551.370621 C = 7705.382869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.130 4.130 11 C 0.512 3.488 12 O -0.532 6.532 13 N -0.738 5.738 14 C 0.145 3.855 15 H 0.104 0.896 16 C -0.135 4.135 17 C -0.159 4.159 18 C 0.284 3.716 19 F -0.198 7.198 20 F -0.199 7.199 21 C -0.172 4.172 22 H 0.261 0.739 23 H 0.023 0.977 24 H 0.024 0.976 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.399 0.601 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.708 -19.287 -1.159 20.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.301 3.699 12 O -0.406 6.406 13 N -0.392 5.392 14 C 0.039 3.961 15 H 0.122 0.878 16 C -0.174 4.174 17 C -0.198 4.198 18 C 0.247 3.753 19 F -0.179 7.179 20 F -0.180 7.180 21 C -0.211 4.211 22 H 0.071 0.929 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.233 0.767 28 H 0.108 0.892 29 H 0.099 0.901 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.668 -19.175 -1.133 19.768 hybrid contribution 1.065 0.644 0.033 1.245 sum 5.733 -18.531 -1.100 19.429 Atomic orbital electron populations 1.69999 1.06066 1.26609 1.50153 1.25025 0.94824 0.99241 0.95265 0.86587 0.79778 0.83492 0.78073 1.20665 1.21214 1.19880 1.21221 0.92936 0.91012 1.51465 0.92598 1.18903 0.93175 0.89382 0.98638 1.21880 1.00755 0.91795 1.02583 1.21624 0.88705 0.85601 0.74011 1.90672 1.14441 1.87551 1.47975 1.46249 1.09915 1.04997 1.78015 1.21588 0.96053 0.82767 0.95728 0.87793 1.22952 1.04027 0.92748 0.97678 1.23357 0.99331 0.98347 0.98739 1.21717 0.81516 0.84431 0.87603 1.93021 1.50455 1.90568 1.83869 1.93019 1.86577 1.65012 1.73418 1.23435 1.03396 0.92942 1.01282 0.92934 0.95818 0.95800 0.90140 0.90158 0.76692 0.89176 0.90070 0.88701 0.88075 0.88124 0.87969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.20 13.29 55.43 0.74 -26.47 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.47 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.53 -14.80 9.11 -34.44 -0.31 -15.11 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.04 0.97 4.26 -27.89 -0.12 0.85 16 10 C -0.13 -2.54 5.64 -27.89 -0.16 -2.69 16 11 C 0.51 9.25 7.83 -10.99 -0.09 9.16 16 12 O -0.53 -11.90 15.63 5.56 0.09 -11.81 16 13 N -0.74 -9.34 5.16 -52.20 -0.27 -9.61 16 14 C 0.14 1.61 3.22 -66.27 -0.21 1.39 16 15 H 0.10 1.34 7.55 -51.93 -0.39 0.94 16 16 C -0.14 -1.35 6.58 -24.74 -0.16 -1.52 16 17 C -0.16 -1.34 6.40 -25.07 -0.16 -1.50 16 18 C 0.28 2.71 2.57 -25.61 -0.07 2.65 16 19 F -0.20 -2.13 17.04 2.25 0.04 -2.09 16 20 F -0.20 -2.16 17.04 2.25 0.04 -2.13 16 21 C -0.17 -1.52 6.23 -25.61 -0.16 -1.68 16 22 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 23 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 24 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 25 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 26 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 27 H 0.40 3.86 8.37 -40.82 -0.34 3.52 16 28 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.09 0.70 8.11 -51.93 -0.42 0.28 16 31 H 0.10 0.78 8.12 -51.93 -0.42 0.36 16 32 H 0.10 0.77 7.60 -51.93 -0.39 0.38 16 33 H 0.10 0.85 8.02 -51.93 -0.42 0.43 16 LS Contribution 288.91 15.07 4.35 4.35 Total: -1.00 -33.20 288.91 -6.03 -39.23 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -4.46 Total: -1.05 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -1.54 Total: -6.87 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.47 Total: -36.08 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.08 Total: -4.21 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -33.20 -6.03 -39.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589708279.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.907 kcal (2) G-P(sol) polarization free energy of solvation -33.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds