Wall clock time and date at job start Thu Apr 9 2020 12:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34514 * 125.79191 * 2 1 4 4 C 1.41376 * 106.84120 * 179.79346 * 3 2 1 5 5 C 1.34513 * 106.84252 * 0.37053 * 4 3 2 6 6 C 1.50702 * 125.79232 * 179.88819 * 5 4 3 7 7 N 1.46505 * 109.46678 * 89.71932 * 6 5 4 8 8 C 1.35310 * 125.86763 * 125.29856 * 7 6 5 9 9 C 1.35348 * 106.17503 * 180.17814 * 8 7 6 10 10 C 1.50700 * 126.75241 * 179.84708 * 9 8 7 11 11 C 1.50702 * 109.46869 * 124.71667 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48496 * 109.47341 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46983 * 120.00379 * 15 13 11 18 18 H 1.48503 * 109.47491 * 240.00192 * 15 13 11 19 19 N 1.33770 * 106.49624 * 359.59617 * 9 8 7 20 20 N 1.28632 * 108.88455 * 0.25241 * 19 9 8 21 21 O 1.34302 * 125.78744 * 180.02562 * 2 1 3 22 22 H 1.08998 * 109.47436 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47227 * 300.00295 * 1 2 3 24 24 H 1.09006 * 109.47127 * 59.99818 * 1 2 3 25 25 H 1.08002 * 126.57869 * 0.04366 * 3 2 1 26 26 H 1.08006 * 126.58253 * 180.23943 * 4 3 2 27 27 H 1.09001 * 109.47225 * 329.72032 * 6 5 4 28 28 H 1.08999 * 109.47411 * 209.71698 * 6 5 4 29 29 H 1.08000 * 126.91429 * 0.03609 * 8 7 6 30 30 H 1.09004 * 109.47210 * 4.71960 * 10 9 8 31 31 H 1.08994 * 109.47551 * 244.71612 * 10 9 8 32 32 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0049 5 6 3.5814 -0.7122 -0.0008 6 6 4.7705 -1.6380 -0.0009 7 7 5.1557 -1.9382 1.3804 8 6 5.2858 -3.1737 1.9164 9 6 5.6495 -2.9884 3.2069 10 6 5.9155 -4.0609 4.2317 11 6 7.2936 -3.8711 4.8112 12 1 7.9146 -3.0552 4.4718 13 6 7.7594 -4.7353 5.7794 14 7 7.0031 -5.7286 6.1930 15 14 9.4646 -4.4955 6.5033 16 1 10.1080 -3.3145 5.8737 17 1 9.3543 -4.2764 7.9679 18 1 10.2870 -5.7046 6.2442 19 7 5.7319 -1.6662 3.3922 20 7 5.4334 -1.0721 2.2911 21 8 2.2924 -1.0894 -0.0005 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.9666 2.1204 0.0007 26 1 4.5213 1.2432 0.0098 27 1 5.6040 -1.1588 -0.5145 28 1 4.5106 -2.5633 -0.5149 29 1 5.1286 -4.1178 1.4160 30 1 5.8526 -5.0403 3.7574 31 1 5.1742 -3.9945 5.0279 32 1 7.3309 -6.3368 6.8739 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594648351.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:21:22 Heat of formation + Delta-G solvation = 84.324866 kcal Electronic energy + Delta-G solvation = -16811.278797 eV Core-core repulsion = 13967.996523 eV Total energy + Delta-G solvation = -2843.282273 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.14072 -43.55351 -36.45331 -35.24741 -34.21751 -33.02294 -32.77385 -30.04220 -29.14586 -26.04847 -25.42813 -23.06805 -22.66673 -22.09227 -21.06971 -18.65497 -18.29032 -17.86336 -16.99241 -16.83508 -16.51174 -15.60848 -15.39141 -14.83343 -14.52633 -14.21187 -13.92552 -13.84320 -13.80261 -13.63299 -13.28957 -12.87302 -12.68194 -12.65748 -12.47260 -11.91529 -11.67493 -11.39930 -10.98076 -10.92541 -10.58420 -9.88477 -9.42465 -8.18652 -6.27348 0.38040 0.73385 1.40249 1.41050 1.42156 1.55258 1.75195 1.80552 1.93128 2.45052 3.14153 3.41397 3.57960 3.80155 3.95718 4.02410 4.19954 4.28112 4.45531 4.50157 4.68454 4.72175 4.77278 4.79888 4.99540 5.17544 5.28394 5.42986 5.52656 5.53632 5.76094 5.77128 6.08315 6.22356 6.81162 7.39409 7.68888 8.92597 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.049949 B = 0.004163 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.434608 B = 6724.654220 C = 6902.548675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.008 4.008 3 C -0.232 4.232 4 C -0.166 4.166 5 C -0.070 4.070 6 C 0.198 3.802 7 N -0.290 5.290 8 C -0.049 4.049 9 C -0.009 4.009 10 C 0.102 3.898 11 C -0.523 4.523 12 H 0.045 0.955 13 C 0.008 3.992 14 N -0.927 5.927 15 Si 0.964 3.036 16 H -0.273 1.273 17 H -0.277 1.277 18 H -0.270 1.270 19 N -0.308 5.308 20 N -0.111 5.111 21 O -0.189 6.189 22 H 0.079 0.921 23 H 0.097 0.903 24 H 0.111 0.889 25 H 0.171 0.829 26 H 0.161 0.839 27 H 0.154 0.846 28 H 0.155 0.845 29 H 0.228 0.772 30 H 0.036 0.964 31 H 0.006 0.994 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.121 9.230 -18.595 23.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.059 4.059 3 C -0.251 4.251 4 C -0.186 4.186 5 C -0.120 4.120 6 C 0.080 3.920 7 N -0.086 5.086 8 C -0.198 4.198 9 C -0.147 4.147 10 C 0.063 3.937 11 C -0.561 4.561 12 H 0.063 0.937 13 C -0.190 4.190 14 N -0.568 5.568 15 Si 0.788 3.212 16 H -0.198 1.198 17 H -0.203 1.203 18 H -0.195 1.195 19 N -0.175 5.175 20 N -0.090 5.090 21 O -0.087 6.087 22 H 0.098 0.902 23 H 0.115 0.885 24 H 0.129 0.871 25 H 0.188 0.812 26 H 0.178 0.822 27 H 0.172 0.828 28 H 0.173 0.827 29 H 0.244 0.756 30 H 0.054 0.946 31 H 0.024 0.976 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.099 10.298 -18.189 23.666 hybrid contribution 0.776 -0.875 0.471 1.261 sum -10.322 9.423 -17.718 22.567 Atomic orbital electron populations 1.20541 0.82333 1.04922 1.05317 1.23339 0.95697 0.83709 1.03166 1.21941 0.92290 1.00763 1.10082 1.21968 0.99410 0.93843 1.03425 1.22175 0.83117 0.94921 1.11784 1.20716 0.92851 1.02138 0.76333 1.47644 1.44129 1.04700 1.12136 1.23828 1.09413 0.91725 0.94841 1.22699 1.02831 0.92877 0.96259 1.17401 0.95825 0.89953 0.90528 1.21314 1.00623 1.12335 1.21872 0.93662 1.25809 1.01758 0.94778 0.96702 1.70052 1.38548 1.17038 1.31132 0.85421 0.79410 0.78194 0.78133 1.19814 1.20291 1.19514 1.74991 1.18171 1.07557 1.16757 1.78082 1.18435 1.19084 0.93357 1.83946 1.16568 1.36272 1.71918 0.90215 0.88451 0.87101 0.81165 0.82153 0.82830 0.82711 0.75595 0.94603 0.97580 0.92490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.42 71.24 0.74 -0.17 16 2 C -0.01 -0.18 7.32 24.83 0.18 0.01 16 3 C -0.23 -4.82 10.81 22.19 0.24 -4.58 16 4 C -0.17 -3.84 10.81 22.19 0.24 -3.60 16 5 C -0.07 -1.68 6.69 24.83 0.17 -1.51 16 6 C 0.20 3.97 6.99 85.63 0.60 4.57 16 7 N -0.29 -9.43 3.43 -351.46 -1.21 -10.63 16 8 C -0.05 -1.73 11.49 83.49 0.96 -0.77 16 9 C -0.01 -0.43 6.44 41.60 0.27 -0.16 16 10 C 0.10 5.59 5.55 29.10 0.16 5.75 16 11 C -0.52 -31.31 9.09 25.60 0.23 -31.08 16 12 H 0.05 2.78 7.74 -2.91 -0.02 2.75 16 13 C 0.01 0.45 5.46 84.66 0.46 0.91 16 14 N -0.93 -56.10 13.29 21.45 0.28 -55.82 16 15 Si 0.96 45.98 29.54 68.60 2.03 48.00 16 16 H -0.27 -12.98 7.11 99.48 0.71 -12.28 16 17 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 19 N -0.31 -15.43 12.40 -48.60 -0.60 -16.03 16 20 N -0.11 -4.63 12.92 37.02 0.48 -4.15 16 21 O -0.19 -4.81 10.65 -2.50 -0.03 -4.83 16 22 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 25 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 26 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 27 H 0.15 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.16 1.93 8.07 -2.39 -0.02 1.91 16 29 H 0.23 5.76 8.06 -2.91 -0.02 5.74 16 30 H 0.04 1.92 8.12 -2.38 -0.02 1.90 16 31 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 Total: -1.00 -78.76 291.73 6.33 -72.43 By element: Atomic # 1 Polarization: 0.55 SS G_CDS: 1.12 Total: 1.67 kcal Atomic # 6 Polarization: -34.89 SS G_CDS: 4.25 Total: -30.64 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -1.04 Total: -86.63 kcal Atomic # 8 Polarization: -4.81 SS G_CDS: -0.03 Total: -4.83 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Total: -78.76 6.33 -72.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594648351.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.753 kcal (2) G-P(sol) polarization free energy of solvation -78.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds