Wall clock time and date at job start Thu Apr 9 2020 12:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00273 * 2 1 4 4 H 1.48501 * 109.47696 * 240.00121 * 3 2 1 5 5 H 1.48502 * 109.47372 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46985 * 120.00184 * 3 2 1 7 7 C 1.37883 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99949 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.53950 * 113.73697 * 81.26373 * 9 7 2 11 11 N 1.47925 * 85.99352 * 138.00352 * 10 9 7 12 12 C 1.34779 * 134.50236 * 155.33761 * 11 10 9 13 13 O 1.21585 * 120.00286 * 180.02562 * 12 11 10 14 14 N 1.34781 * 119.99702 * 0.02621 * 12 11 10 15 15 C 1.39977 * 119.99850 * 175.32662 * 14 12 11 16 16 C 1.39272 * 120.48602 * 34.96132 * 15 14 12 17 17 C 1.38504 * 118.35885 * 180.02562 * 16 15 14 18 18 C 1.38270 * 119.23554 * 0.02562 * 17 16 15 19 19 N 1.31856 * 120.91969 * 359.97438 * 18 17 16 20 20 C 1.31821 * 121.79417 * 359.70332 * 19 18 17 21 21 C 1.47579 * 91.00982 * 335.35754 * 11 10 9 22 22 H 0.97000 * 119.99505 * 359.97438 * 1 2 3 23 23 H 1.08997 * 112.94192 * 309.67415 * 9 7 2 24 24 H 1.08998 * 113.76553 * 252.36001 * 10 9 7 25 25 H 1.08999 * 113.76731 * 23.75903 * 10 9 7 26 26 H 0.96997 * 120.00146 * 355.32786 * 14 12 11 27 27 H 1.07997 * 120.81913 * 359.97438 * 16 15 14 28 28 H 1.07997 * 120.38402 * 180.02562 * 17 16 15 29 29 H 1.08005 * 119.54169 * 179.97438 * 18 17 16 30 30 H 1.08003 * 119.66861 * 180.31373 * 20 19 18 31 31 H 1.09003 * 113.76924 * 270.33901 * 21 11 10 32 32 H 1.08997 * 113.87796 * 138.95094 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 0.7551 -2.9286 -1.3933 11 7 1.1897 -4.2907 -1.0139 12 6 0.8395 -5.5348 -1.3960 13 8 1.3838 -6.5002 -0.8961 14 7 -0.1142 -5.7087 -2.3325 15 6 -0.4094 -6.9946 -2.8003 16 6 -0.3472 -8.0901 -1.9426 17 6 -0.6476 -9.3424 -2.4522 18 6 -0.9962 -9.4635 -3.7847 19 7 -1.0458 -8.4060 -4.5708 20 6 -0.7736 -7.1958 -4.1249 21 6 2.1607 -3.7402 -0.0484 22 1 -0.4849 0.8401 0.0004 23 1 0.4838 -2.5469 0.7723 24 1 -0.3223 -2.8302 -1.5257 25 1 1.3271 -2.4979 -2.2152 26 1 -0.5959 -4.9429 -2.6822 27 1 -0.0707 -7.9662 -0.9060 28 1 -0.6101 -10.2144 -1.8161 29 1 -1.2310 -10.4378 -4.1874 30 1 -0.8299 -6.3529 -4.7979 31 1 3.1445 -3.5475 -0.4762 32 1 2.2061 -4.2882 0.8927 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596456060.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:21:28 Heat of formation + Delta-G solvation = 27.343200 kcal Electronic energy + Delta-G solvation = -17016.930343 eV Core-core repulsion = 14171.177159 eV Total energy + Delta-G solvation = -2845.753184 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.90787 -40.66925 -38.95532 -36.06483 -34.63949 -33.12630 -31.69849 -29.95665 -26.96686 -26.88716 -24.80551 -24.09141 -22.23423 -20.64744 -19.28908 -18.62796 -18.29027 -17.86811 -17.17661 -16.67685 -16.37192 -16.16439 -15.34929 -14.92136 -14.77783 -14.39531 -14.12506 -13.96193 -13.32120 -13.20470 -13.04539 -12.79215 -12.58490 -12.23464 -11.97752 -11.65799 -11.15639 -11.01208 -10.69745 -10.56438 -10.37527 -9.75036 -9.20049 -8.16044 -6.26838 0.08528 0.28715 1.37308 1.49712 1.51532 1.58009 1.99173 2.46184 2.75228 2.87447 3.15854 3.60536 3.88334 3.96852 4.12854 4.23760 4.34228 4.42793 4.51945 4.64866 4.68855 4.71908 4.89295 4.97830 5.11936 5.20984 5.28335 5.60758 5.81084 5.82310 6.10405 6.22910 6.80765 6.92197 6.96555 7.36946 7.44037 8.93339 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.055856 B = 0.004293 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.170577 B = 6520.123366 C = 6801.617888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.024 3.976 3 Si 0.956 3.044 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.532 4.532 8 H 0.066 0.934 9 C 0.024 3.976 10 C 0.119 3.881 11 N -0.657 5.657 12 C 0.715 3.285 13 O -0.623 6.623 14 N -0.672 5.672 15 C 0.105 3.895 16 C -0.102 4.102 17 C -0.146 4.146 18 C 0.072 3.928 19 N -0.483 5.483 20 C 0.070 3.930 21 C 0.131 3.869 22 H 0.264 0.736 23 H 0.037 0.963 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.420 0.580 27 H 0.129 0.871 28 H 0.165 0.835 29 H 0.190 0.810 30 H 0.175 0.825 31 H 0.084 0.916 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.567 -11.619 -6.438 13.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.176 4.176 3 Si 0.781 3.219 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.570 4.570 8 H 0.084 0.916 9 C 0.004 3.996 10 C -0.002 4.002 11 N -0.393 5.393 12 C 0.419 3.581 13 O -0.505 6.505 14 N -0.320 5.320 15 C 0.007 3.993 16 C -0.131 4.131 17 C -0.166 4.166 18 C -0.085 4.085 19 N -0.192 5.192 20 C -0.090 4.090 21 C 0.009 3.991 22 H 0.073 0.927 23 H 0.055 0.945 24 H 0.086 0.914 25 H 0.099 0.901 26 H 0.257 0.743 27 H 0.147 0.853 28 H 0.183 0.817 29 H 0.207 0.793 30 H 0.192 0.808 31 H 0.102 0.898 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.581 -12.404 -6.990 14.470 hybrid contribution 0.351 1.555 0.979 1.871 sum -2.230 -10.849 -6.011 12.602 Atomic orbital electron populations 1.70034 1.07285 1.27884 1.50275 1.25698 0.95537 1.02327 0.94087 0.85647 0.78353 0.78914 0.78955 1.19344 1.21375 1.19830 1.21245 0.93406 0.90605 1.51748 0.91583 1.20394 0.94232 0.91786 0.93159 1.23555 0.99491 0.76253 1.00944 1.49673 1.42433 1.03204 1.44030 1.15706 0.80068 0.82573 0.79725 1.90818 1.59906 1.39471 1.60279 1.42350 1.39084 1.08152 1.42405 1.18859 1.00986 0.85060 0.94354 1.21885 0.97561 0.92972 1.00668 1.22385 0.98889 0.97681 0.97648 1.23261 0.96403 0.98372 0.90478 1.67708 1.13880 0.99070 1.38510 1.22819 0.99092 0.96224 0.90844 1.23327 0.93469 0.91795 0.90505 0.92662 0.94460 0.91428 0.90104 0.74273 0.85267 0.81742 0.79287 0.80764 0.89813 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.44 13.29 21.45 0.28 -48.16 16 2 C 0.02 1.20 5.46 84.66 0.46 1.66 16 3 Si 0.96 39.75 29.54 68.60 2.03 41.78 16 4 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 5 H -0.29 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.53 -26.04 8.77 25.60 0.22 -25.81 16 8 H 0.07 3.13 7.81 -2.91 -0.02 3.11 16 9 C 0.02 1.07 3.60 -10.88 -0.04 1.03 16 10 C 0.12 4.70 8.03 86.42 0.69 5.39 16 11 N -0.66 -25.51 3.62 -854.00 -3.09 -28.60 16 12 C 0.72 27.47 8.62 179.05 1.54 29.02 16 13 O -0.62 -27.22 14.55 -3.98 -0.06 -27.27 16 14 N -0.67 -20.64 5.35 -316.85 -1.70 -22.34 16 15 C 0.11 3.04 6.32 38.23 0.24 3.28 16 16 C -0.10 -2.97 8.81 22.58 0.20 -2.77 16 17 C -0.15 -3.14 10.10 22.34 0.23 -2.92 16 18 C 0.07 1.47 11.18 84.70 0.95 2.42 16 19 N -0.48 -11.92 10.35 -195.32 -2.02 -13.94 16 20 C 0.07 1.75 11.12 84.84 0.94 2.69 16 21 C 0.13 5.24 8.39 86.49 0.73 5.97 16 22 H 0.26 13.41 8.31 -92.71 -0.77 12.64 16 23 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 25 H 0.08 3.11 8.09 -2.39 -0.02 3.09 16 26 H 0.42 10.90 8.45 -92.71 -0.78 10.12 16 27 H 0.13 4.32 6.32 -2.91 -0.02 4.30 16 28 H 0.17 2.46 8.06 -2.91 -0.02 2.43 16 29 H 0.19 2.37 8.06 -2.91 -0.02 2.34 16 30 H 0.18 3.48 8.06 -2.91 -0.02 3.45 16 31 H 0.08 3.17 8.09 -2.39 -0.02 3.15 16 32 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -60.81 284.09 1.97 -58.84 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.36 Total: 19.74 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: 6.17 Total: 19.96 kcal Atomic # 7 Polarization: -106.51 SS G_CDS: -6.52 Total: -113.04 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.06 Total: -27.27 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.78 kcal Total: -60.81 1.97 -58.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596456060.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.185 kcal (2) G-P(sol) polarization free energy of solvation -60.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds