Wall clock time and date at job start Thu Apr 9 2020 12:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.32073 * 120.06424 * 2 1 4 4 C 1.32141 * 120.07669 * 179.97438 * 3 2 1 5 5 C 1.38758 * 120.21718 * 359.97438 * 4 3 2 6 6 N 1.31780 * 120.12888 * 359.97438 * 5 4 3 7 7 C 1.33105 * 119.92056 * 0.02562 * 6 5 4 8 8 C 1.47978 * 120.11089 * 179.97438 * 7 6 5 9 9 O 1.21565 * 120.00263 * 253.64739 * 8 7 6 10 10 N 1.34782 * 119.99936 * 73.64181 * 8 7 6 11 11 C 1.36768 * 120.00092 * 185.30521 * 10 8 7 12 12 H 1.08005 * 120.00216 * 226.34222 * 11 10 8 13 13 C 1.39117 * 120.00203 * 46.33307 * 11 10 8 14 14 N 1.31317 * 119.99819 * 6.30629 * 13 11 10 15 15 Si 1.86798 * 120.00162 * 186.29801 * 13 11 10 16 16 H 1.48501 * 109.47181 * 90.00617 * 15 13 11 17 17 H 1.48498 * 109.47171 * 210.00204 * 15 13 11 18 18 H 1.48500 * 109.47343 * 330.00493 * 15 13 11 19 19 C 1.46509 * 119.99765 * 5.30848 * 10 8 7 20 20 C 1.52997 * 117.49403 * 193.35986 * 19 10 8 21 21 C 1.52993 * 117.49851 * 124.73593 * 19 10 8 22 22 H 1.08998 * 109.46604 * 85.34639 * 1 2 3 23 23 H 1.08995 * 109.47569 * 205.34911 * 1 2 3 24 24 H 1.09000 * 109.47230 * 325.35119 * 1 2 3 25 25 H 1.08003 * 119.89079 * 179.97438 * 4 3 2 26 26 H 1.07999 * 119.93367 * 180.02562 * 5 4 3 27 27 H 0.97003 * 120.00030 * 184.99432 * 14 13 11 28 28 H 1.08995 * 115.54773 * 339.06006 * 19 10 8 29 29 H 1.09001 * 117.50157 * 359.97438 * 20 19 10 30 30 H 1.09003 * 117.50118 * 145.01932 * 20 19 10 31 31 H 1.08991 * 117.50080 * 214.97735 * 21 19 10 32 32 H 1.09002 * 117.49962 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1687 1.1430 0.0000 4 6 3.4901 1.1433 0.0005 5 6 4.1887 -0.0556 0.0016 6 7 3.5370 -1.2009 0.0026 7 6 2.2059 -1.2074 0.0021 8 6 1.4698 -2.4911 0.0027 9 8 0.9107 -2.8716 -1.0075 10 7 1.4193 -3.2385 1.1232 11 6 0.8329 -4.4737 1.0954 12 1 0.1378 -4.7592 1.8712 13 6 1.1317 -5.3626 0.0678 14 7 2.0668 -5.0666 -0.8053 15 14 0.2028 -6.9774 -0.0700 16 1 -0.9994 -6.7859 -0.9204 17 1 1.0835 -8.0045 -0.6821 18 1 -0.2142 -7.4256 1.2830 19 6 1.9925 -2.7275 2.3709 20 6 2.1895 -3.7218 3.5169 21 6 1.0794 -2.6720 3.5972 22 1 -0.3632 0.0834 -1.0243 23 1 -0.3634 -0.9286 0.4399 24 1 -0.3634 0.8454 0.5843 25 1 4.0281 2.0798 0.0001 26 1 5.2687 -0.0500 0.0024 27 1 2.2257 -5.6512 -1.5628 28 1 2.7329 -1.9356 2.2584 29 1 1.8923 -4.7560 3.3428 30 1 3.0597 -3.5842 4.1587 31 1 1.2191 -1.8438 4.2917 32 1 0.0520 -3.0152 3.4755 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596917345.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:21:32 Heat of formation + Delta-G solvation = 57.015607 kcal Electronic energy + Delta-G solvation = -18220.580020 eV Core-core repulsion = 15376.113529 eV Total energy + Delta-G solvation = -2844.466492 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.76078 -38.35165 -36.09847 -34.14446 -33.00201 -32.26560 -30.83243 -27.81480 -25.83123 -24.13629 -22.47495 -21.70251 -21.28424 -19.92046 -17.50283 -17.18793 -16.14945 -15.78337 -15.06151 -14.84220 -14.37935 -14.05012 -13.67775 -13.02971 -12.91541 -12.51070 -12.40709 -11.96682 -11.89783 -11.19482 -11.12420 -11.02242 -10.82752 -10.71691 -10.65892 -10.23755 -10.05717 -9.79151 -9.03300 -8.79198 -8.68418 -8.14320 -7.10500 -6.11782 -4.01178 1.05747 1.49529 3.27207 3.32715 3.34876 3.74579 4.04218 4.17371 4.35390 4.54961 4.67644 4.88559 4.98758 5.14404 5.30140 5.51715 5.57325 5.61344 5.68645 5.78973 5.93442 5.99135 6.10266 6.20821 6.33645 6.41117 6.66713 6.75999 6.93356 7.54021 7.62431 8.15878 8.17569 8.94878 9.02336 9.49821 10.13473 10.91532 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.025498 B = 0.008766 C = 0.007923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.880101 B = 3193.503707 C = 3533.242597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.099 3.901 3 N -0.444 5.444 4 C 0.039 3.961 5 C 0.036 3.964 6 N -0.408 5.408 7 C 0.083 3.917 8 C 0.540 3.460 9 O -0.512 6.512 10 N -0.409 5.409 11 C -0.338 4.338 12 H 0.082 0.918 13 C 0.061 3.939 14 N -0.822 5.822 15 Si 0.916 3.084 16 H -0.277 1.277 17 H -0.285 1.285 18 H -0.271 1.271 19 C 0.074 3.926 20 C -0.173 4.173 21 C -0.205 4.205 22 H 0.083 0.917 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.165 0.835 26 H 0.166 0.834 27 H 0.267 0.733 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.743 8.587 5.317 10.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.042 4.042 3 N -0.159 5.159 4 C -0.122 4.122 5 C -0.125 4.125 6 N -0.124 5.124 7 C -0.060 4.060 8 C 0.325 3.675 9 O -0.387 6.387 10 N -0.128 5.128 11 C -0.465 4.465 12 H 0.100 0.900 13 C -0.150 4.150 14 N -0.455 5.455 15 Si 0.742 3.258 16 H -0.203 1.203 17 H -0.210 1.210 18 H -0.196 1.196 19 C -0.032 4.032 20 C -0.211 4.211 21 C -0.244 4.244 22 H 0.101 0.899 23 H 0.103 0.897 24 H 0.094 0.906 25 H 0.182 0.818 26 H 0.183 0.817 27 H 0.077 0.923 28 H 0.117 0.883 29 H 0.127 0.873 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.579 8.244 4.620 9.581 hybrid contribution 0.082 -0.632 -0.189 0.665 sum 1.661 7.612 4.430 8.962 Atomic orbital electron populations 1.20672 0.87496 1.03775 1.03558 1.22234 0.98422 0.88269 0.95250 1.68237 1.08856 1.28966 1.09879 1.23758 0.90915 0.99596 0.97882 1.23825 1.01777 0.88995 0.97953 1.68742 1.08013 1.28893 1.06733 1.22939 0.90611 0.97057 0.95368 1.17210 0.83347 0.81193 0.85762 1.90653 1.46657 1.69371 1.32052 1.42475 1.50821 1.14350 1.05169 1.18933 1.24952 0.88772 1.13891 0.89995 1.25432 0.94598 0.98251 0.96728 1.69836 1.27077 1.37386 1.11203 0.86138 0.79462 0.81688 0.78490 1.20269 1.21046 1.19566 1.21670 0.98425 0.99808 0.83288 1.23079 0.99269 0.97712 1.00990 1.23286 0.97223 1.01683 1.02164 0.89892 0.89684 0.90563 0.81792 0.81682 0.92259 0.88343 0.87259 0.89871 0.89881 0.88729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.66 9.89 36.01 0.36 -1.31 16 2 C 0.10 1.92 6.82 -82.01 -0.56 1.36 16 3 N -0.44 -7.63 10.42 -8.93 -0.09 -7.72 16 4 C 0.04 0.56 11.23 -17.23 -0.19 0.37 16 5 C 0.04 0.57 11.22 -17.38 -0.20 0.37 16 6 N -0.41 -8.62 9.94 -9.63 -0.10 -8.71 16 7 C 0.08 1.87 4.88 -82.85 -0.40 1.46 16 8 C 0.54 14.19 4.80 -12.27 -0.06 14.13 16 9 O -0.51 -15.33 14.92 5.31 0.08 -15.25 16 10 N -0.41 -10.39 2.86 -108.75 -0.31 -10.70 16 11 C -0.34 -9.09 7.53 -15.02 -0.11 -9.20 16 12 H 0.08 2.10 7.61 -52.48 -0.40 1.70 16 13 C 0.06 1.71 4.76 -17.45 -0.08 1.62 16 14 N -0.82 -24.52 11.25 55.50 0.62 -23.89 16 15 Si 0.92 21.30 29.56 -169.99 -5.03 16.27 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 19 C 0.07 1.57 6.14 -67.93 -0.42 1.16 16 20 C -0.17 -3.22 9.86 -26.73 -0.26 -3.48 16 21 C -0.20 -3.60 10.16 -26.73 -0.27 -3.88 16 22 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 23 H 0.08 1.59 6.91 -51.93 -0.36 1.23 16 24 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 25 H 0.16 1.60 8.06 -52.48 -0.42 1.18 16 26 H 0.17 1.91 8.06 -52.49 -0.42 1.49 16 27 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 28 H 0.10 2.05 6.58 -51.93 -0.34 1.70 16 29 H 0.11 2.21 7.10 -51.93 -0.37 1.84 16 30 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.09 1.72 8.03 -51.93 -0.42 1.30 16 LS Contribution 280.79 15.07 4.23 4.23 Total: -1.00 -33.62 280.79 -6.35 -39.97 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -3.56 Total: 3.20 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -2.20 Total: 2.61 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: 0.12 Total: -51.03 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.08 Total: -15.25 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -33.62 -6.35 -39.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596917345.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.990 kcal (2) G-P(sol) polarization free energy of solvation -33.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds