Wall clock time and date at job start Thu Apr 9 2020 12:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34456 * 125.45779 * 2 1 4 4 C 1.46709 * 106.39087 * 179.97438 * 3 2 1 5 5 C 1.47183 * 127.02151 * 180.02562 * 4 3 2 6 6 O 1.21648 * 120.00295 * 169.40442 * 5 4 3 7 7 N 1.34776 * 119.99566 * 349.40067 * 5 4 3 8 8 C 1.36971 * 119.99882 * 183.66066 * 7 5 4 9 9 H 1.08003 * 120.00005 * 11.40692 * 8 7 5 10 10 C 1.38982 * 120.00111 * 191.40752 * 8 7 5 11 11 N 1.31413 * 119.99557 * 32.39885 * 10 8 7 12 12 Si 1.86795 * 119.99971 * 212.40299 * 10 8 7 13 13 H 1.48500 * 109.47621 * 59.99762 * 12 10 8 14 14 H 1.48498 * 109.47044 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47079 * 299.99959 * 12 10 8 16 16 C 1.46503 * 120.00007 * 3.66004 * 7 5 4 17 17 C 1.47199 * 109.47076 * 81.68139 * 16 7 5 18 18 N 4.43823 * 102.57344 * 27.27585 * 2 1 3 19 19 C 1.37848 * 105.96228 * 359.97438 * 4 3 2 20 20 C 1.50696 * 125.89957 * 179.97438 * 19 4 3 21 21 N 1.34695 * 108.19466 * 0.24578 * 19 4 3 22 22 H 0.97007 * 124.81598 * 179.72097 * 21 19 4 23 23 H 1.09000 * 109.47459 * 89.99946 * 1 2 3 24 24 H 1.09000 * 109.47164 * 209.99761 * 1 2 3 25 25 H 1.09000 * 109.47224 * 329.99661 * 1 2 3 26 26 H 1.08002 * 126.80257 * 359.94586 * 3 2 1 27 27 H 0.97008 * 119.99482 * 180.02562 * 11 10 8 28 28 H 1.09001 * 109.46971 * 201.67502 * 16 7 5 29 29 H 1.08995 * 109.47311 * 321.67451 * 16 7 5 30 30 H 1.09008 * 109.47021 * 89.99845 * 20 19 4 31 31 H 1.08999 * 109.47200 * 330.00827 * 20 19 4 32 32 H 1.08996 * 109.47164 * 210.00271 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2869 1.0952 0.0000 4 6 3.6735 0.6159 0.0006 5 6 4.8950 1.4371 0.0014 6 8 5.9775 0.9171 0.1956 7 7 4.8142 2.7652 -0.2131 8 6 5.9563 3.5177 -0.2871 9 1 6.9187 3.0329 -0.3589 10 6 5.8767 4.9052 -0.2698 11 7 4.9248 5.5001 0.4135 12 14 7.1226 5.9241 -1.2179 13 1 7.0498 5.5786 -2.6603 14 1 6.8213 7.3670 -1.0382 15 1 8.4875 5.6366 -0.7083 16 6 3.5048 3.4040 -0.3672 17 6 2.9223 3.6556 0.9610 18 7 2.4731 3.8501 1.9852 19 6 3.5989 -0.7605 0.0016 20 6 4.7699 -1.7090 0.0019 21 7 2.2984 -1.1112 -0.0040 22 1 1.9710 -2.0243 -0.0085 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8899 0.5139 26 1 1.9579 2.1239 -0.0008 27 1 4.8690 6.4685 0.4253 28 1 3.6217 4.3491 -0.8975 29 1 2.8450 2.7480 -0.9351 30 1 5.0525 -1.9369 1.0297 31 1 5.6123 -1.2463 -0.5123 32 1 4.4921 -2.6295 -0.5113 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604544423.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:21:35 Heat of formation + Delta-G solvation = 41.336902 kcal Electronic energy + Delta-G solvation = -17902.286916 eV Core-core repulsion = 15057.140545 eV Total energy + Delta-G solvation = -2845.146371 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.19667 -40.03871 -37.68065 -36.18924 -33.94733 -33.36090 -31.89214 -29.92463 -29.20357 -27.22778 -25.18909 -23.07154 -21.50532 -19.91875 -19.52914 -18.12021 -17.82479 -16.92814 -16.29163 -15.97694 -15.89084 -15.49718 -14.98521 -14.58150 -14.03790 -13.99847 -13.83009 -13.79831 -13.42160 -13.21815 -13.19335 -12.92350 -12.88764 -12.78577 -12.32557 -12.24457 -12.07450 -11.90687 -11.02559 -10.36436 -9.91724 -9.64662 -8.82413 -8.43639 -5.82542 0.90621 1.43307 1.50260 1.55303 1.61234 1.89418 2.15893 2.32284 2.40349 2.60054 3.04081 3.29764 3.60339 3.98394 4.09059 4.33782 4.35541 4.51007 4.56856 4.76652 4.78794 4.82600 4.88246 4.97305 5.15354 5.19044 5.39969 5.52587 5.87724 6.02053 6.19277 6.48432 6.79007 6.90845 7.17120 7.42730 8.06460 8.62153 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.026938 B = 0.008048 C = 0.006641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.191333 B = 3478.382489 C = 4215.342354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.025 3.975 3 C -0.218 4.218 4 C -0.246 4.246 5 C 0.512 3.488 6 O -0.624 6.624 7 N -0.447 5.447 8 C -0.357 4.357 9 H 0.084 0.916 10 C 0.009 3.991 11 N -0.879 5.879 12 Si 0.983 3.017 13 H -0.261 1.261 14 H -0.276 1.276 15 H -0.280 1.280 16 C 0.204 3.796 17 C 0.256 3.744 18 N -0.496 5.496 19 C 0.084 3.916 20 C -0.079 4.079 21 N -0.529 5.529 22 H 0.431 0.569 23 H 0.092 0.908 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.150 0.850 27 H 0.277 0.723 28 H 0.120 0.880 29 H 0.143 0.857 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.259 -10.545 -6.364 16.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.086 4.086 3 C -0.242 4.242 4 C -0.256 4.256 5 C 0.305 3.695 6 O -0.512 6.512 7 N -0.165 5.165 8 C -0.483 4.483 9 H 0.102 0.898 10 C -0.194 4.194 11 N -0.516 5.516 12 Si 0.806 3.194 13 H -0.185 1.185 14 H -0.201 1.201 15 H -0.206 1.206 16 C 0.077 3.923 17 C -0.062 4.062 18 N -0.177 5.177 19 C -0.035 4.035 20 C -0.136 4.136 21 N -0.127 5.127 22 H 0.271 0.729 23 H 0.111 0.889 24 H 0.104 0.896 25 H 0.097 0.903 26 H 0.168 0.832 27 H 0.087 0.913 28 H 0.137 0.863 29 H 0.160 0.840 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.528 -10.399 -4.713 15.530 hybrid contribution 1.084 0.625 -0.259 1.277 sum -9.444 -9.775 -4.972 14.473 Atomic orbital electron populations 1.20439 0.84759 1.04259 1.04217 1.20695 0.94984 0.85225 1.07699 1.22572 0.90922 0.98992 1.11683 1.20576 0.92811 0.93465 1.18706 1.17834 0.88278 0.82385 0.81009 1.90521 1.31298 1.72950 1.56406 1.43587 1.05206 1.05545 1.62118 1.19581 0.87501 0.88794 1.52441 0.89837 1.25903 1.00290 0.97201 0.96041 1.70195 1.36503 1.11347 1.33571 0.85172 0.78020 0.76568 0.79638 1.18513 1.20079 1.20576 1.19681 0.84624 1.01837 0.86127 1.29629 0.91026 0.89981 0.95544 1.80837 1.12653 1.12162 1.12022 1.20632 0.86186 0.93504 1.03152 1.20383 0.93239 0.96821 1.03168 1.41336 1.04014 1.09395 1.58000 0.72871 0.88900 0.89576 0.90339 0.83245 0.91309 0.86265 0.84031 0.90935 0.91364 0.88301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 10.41 71.23 0.74 -0.54 16 2 C 0.02 0.64 7.12 40.98 0.29 0.93 16 3 C -0.22 -7.54 8.11 23.62 0.19 -7.35 16 4 C -0.25 -10.18 6.10 -18.81 -0.11 -10.30 16 5 C 0.51 26.50 7.50 86.59 0.65 27.15 16 6 O -0.62 -35.93 14.68 -4.18 -0.06 -35.99 16 7 N -0.45 -23.19 2.61 -649.38 -1.70 -24.89 16 8 C -0.36 -19.96 9.31 84.07 0.78 -19.18 16 9 H 0.08 5.03 7.41 -2.91 -0.02 5.00 16 10 C 0.01 0.49 4.62 84.93 0.39 0.88 16 11 N -0.88 -46.06 10.19 21.67 0.22 -45.84 16 12 Si 0.98 40.99 29.66 68.60 2.03 43.02 16 13 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 14 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 15 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 16 C 0.20 8.88 4.69 84.57 0.40 9.28 16 17 C 0.26 11.98 11.50 89.45 1.03 13.01 16 18 N -0.50 -24.55 18.53 19.99 0.37 -24.18 16 19 C 0.08 2.75 7.22 42.03 0.30 3.05 16 20 C -0.08 -2.26 9.81 71.23 0.70 -1.56 16 21 N -0.53 -12.55 5.90 -170.32 -1.00 -13.55 16 22 H 0.43 6.21 8.96 -92.70 -0.83 5.37 16 23 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.15 5.19 3.71 -2.91 -0.01 5.18 16 27 H 0.28 13.69 8.31 -92.70 -0.77 12.92 16 28 H 0.12 5.22 6.17 -2.39 -0.01 5.21 16 29 H 0.14 5.11 4.67 -2.39 -0.01 5.10 16 30 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 31 H 0.07 2.43 6.78 -2.39 -0.02 2.41 16 32 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -74.31 276.01 5.57 -68.74 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.35 Total: 17.32 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: 5.36 Total: 15.37 kcal Atomic # 7 Polarization: -106.35 SS G_CDS: -2.11 Total: -108.46 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -0.06 Total: -35.99 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Total: -74.31 5.57 -68.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604544423.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.076 kcal (2) G-P(sol) polarization free energy of solvation -74.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds