Wall clock time and date at job start Thu Apr 9 2020 12:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99713 * 2 1 4 4 H 1.48496 * 109.46864 * 264.81407 * 3 2 1 5 5 H 1.48502 * 109.47281 * 24.81491 * 3 2 1 6 6 H 1.48500 * 109.46779 * 144.81368 * 3 2 1 7 7 C 1.37868 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00460 * 4.85497 * 7 2 1 9 9 C 1.50709 * 119.99944 * 184.85959 * 7 2 1 10 10 H 1.09004 * 109.46697 * 334.99117 * 9 7 2 11 11 C 1.52988 * 109.47270 * 94.99150 * 9 7 2 12 12 Cl 1.80299 * 109.47092 * 186.27978 * 11 9 7 13 13 O 1.42903 * 109.47093 * 214.99301 * 9 7 2 14 14 C 1.42903 * 114.00006 * 149.99754 * 13 9 7 15 15 C 1.52992 * 109.47048 * 179.97438 * 14 13 9 16 16 H 1.09001 * 109.50375 * 304.99916 * 15 14 13 17 17 C 1.53112 * 109.50514 * 184.92169 * 15 14 13 18 18 C 1.53117 * 109.16341 * 182.36650 * 17 15 14 19 19 C 1.53038 * 109.27929 * 57.65519 * 18 17 15 20 20 N 1.46840 * 109.52048 * 300.81775 * 19 18 17 21 21 C 1.46933 * 111.22049 * 61.74882 * 20 19 18 22 22 H 0.96998 * 120.00349 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47535 * 306.27906 * 11 9 7 24 24 H 1.09001 * 109.47802 * 66.28064 * 11 9 7 25 25 H 1.08996 * 109.47147 * 59.99775 * 14 13 9 26 26 H 1.08998 * 109.46925 * 299.99736 * 14 13 9 27 27 H 1.09002 * 109.52528 * 302.27225 * 17 15 14 28 28 H 1.09005 * 109.52685 * 62.39557 * 17 15 14 29 29 H 1.09012 * 109.50371 * 177.59610 * 18 17 15 30 30 H 1.08998 * 109.50278 * 297.66864 * 18 17 15 31 31 H 1.08993 * 109.46212 * 60.83765 * 19 18 17 32 32 H 1.08998 * 109.45986 * 180.80534 * 19 18 17 33 33 H 1.00898 * 111.00317 * 297.64648 * 20 19 18 34 34 H 1.08994 * 109.51925 * 178.26072 * 21 20 19 35 35 H 1.09000 * 109.45433 * 58.25786 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6062 1.9832 -1.3943 5 1 1.3960 2.6819 0.5876 6 1 3.4876 1.4743 0.8068 7 6 2.0045 -1.1940 0.0005 8 1 1.4675 -2.1277 -0.0782 9 6 3.5075 -1.1963 0.1111 10 1 3.9003 -0.2481 -0.2561 11 6 3.9109 -1.3826 1.5750 12 17 5.6978 -1.2014 1.7338 13 8 4.0410 -2.2674 -0.6701 14 6 5.3433 -2.0088 -1.1985 15 6 5.8125 -3.2165 -2.0122 16 1 5.7648 -4.1128 -1.3938 17 6 7.2542 -2.9916 -2.4760 18 6 7.6955 -4.1772 -3.3385 19 6 6.7382 -4.3241 -4.5234 20 7 5.3728 -4.5381 -4.0274 21 6 4.9089 -3.3909 -3.2351 22 1 -0.4850 0.8400 -0.0004 23 1 3.4136 -0.6306 2.1876 24 1 3.6155 -2.3771 1.9097 25 1 6.0393 -1.8309 -0.3788 26 1 5.3065 -1.1293 -1.8413 27 1 7.3095 -2.0742 -3.0621 28 1 7.9076 -2.9086 -1.6074 29 1 8.7066 -4.0029 -3.7069 30 1 7.6782 -5.0885 -2.7407 31 1 6.7671 -3.4178 -5.1282 32 1 7.0413 -5.1763 -5.1317 33 1 5.3111 -5.3933 -3.4955 34 1 3.8841 -3.5651 -2.9075 35 1 4.9464 -2.4889 -3.8459 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001217856400.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:21:28 Heat of formation + Delta-G solvation = -78.518462 kcal Electronic energy + Delta-G solvation = -16635.846035 eV Core-core repulsion = 13886.609839 eV Total energy + Delta-G solvation = -2749.236196 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.108 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.94600 -37.09138 -35.06394 -33.22658 -32.08891 -31.21259 -29.71567 -25.45809 -25.07062 -23.46446 -21.52412 -20.77382 -19.98529 -17.26052 -15.99449 -15.73545 -15.46362 -14.74265 -14.55431 -13.99358 -13.84421 -13.29807 -13.15622 -12.77288 -12.45695 -12.16473 -12.06138 -11.90454 -11.30620 -11.20193 -11.05446 -11.01088 -10.83322 -10.64087 -10.31422 -10.02655 -9.98371 -9.64902 -9.30272 -8.82542 -8.40515 -8.08475 -6.35390 -4.40224 3.00094 3.15510 3.21079 3.23220 4.16892 4.35818 4.50385 4.84961 4.94962 4.99250 5.15949 5.19706 5.52351 5.55406 5.64695 5.75445 5.87636 5.91120 5.96021 6.01645 6.07476 6.10014 6.13098 6.18459 6.40049 6.44777 6.58594 6.78776 7.14818 7.34619 7.49306 7.94079 8.46905 8.78821 9.24033 10.75879 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.023831 B = 0.007057 C = 0.006034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.676210 B = 3966.892269 C = 4639.257776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.082 3.918 3 Si 0.866 3.134 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.260 1.260 7 C -0.516 4.516 8 H 0.087 0.913 9 C 0.186 3.814 10 H 0.031 0.969 11 C -0.033 4.033 12 Cl -0.241 7.241 13 O -0.375 6.375 14 C 0.053 3.947 15 C -0.118 4.118 16 H 0.073 0.927 17 C -0.114 4.114 18 C -0.155 4.155 19 C 0.055 3.945 20 N -0.688 5.688 21 C 0.064 3.936 22 H 0.271 0.729 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.060 0.940 26 H 0.034 0.966 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.338 0.662 34 H 0.090 0.910 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.098 -4.569 -3.606 14.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.123 4.123 3 Si 0.692 3.308 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.554 4.554 8 H 0.105 0.895 9 C 0.129 3.871 10 H 0.049 0.951 11 C -0.096 4.096 12 Cl -0.215 7.215 13 O -0.294 6.294 14 C -0.025 4.025 15 C -0.138 4.138 16 H 0.091 0.909 17 C -0.151 4.151 18 C -0.194 4.194 19 C -0.074 4.074 20 N -0.315 5.315 21 C -0.065 4.065 22 H 0.081 0.919 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.078 0.922 26 H 0.052 0.948 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.156 0.844 34 H 0.109 0.891 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.622 -4.393 -4.228 14.017 hybrid contribution 1.144 1.127 1.050 1.919 sum 13.766 -3.267 -3.178 14.501 Atomic orbital electron populations 1.69856 1.06188 1.27697 1.47626 1.24977 0.94845 0.98843 0.93619 0.87011 0.80527 0.83686 0.79602 1.19450 1.20671 1.18479 1.20753 0.87243 0.95588 1.51771 0.89526 1.20341 0.94888 0.87000 0.84902 0.95119 1.26162 0.75386 1.04413 1.03661 1.98628 1.26159 1.98598 1.98143 1.87965 1.29791 1.42701 1.68918 1.22690 0.87427 0.95721 0.96630 1.21802 0.94842 0.99420 0.97746 0.90868 1.21540 0.95956 0.98213 0.99415 1.22246 0.99975 0.98806 0.98403 1.22018 0.87554 1.01884 0.95993 1.60714 1.22374 1.05709 1.42739 1.22093 0.99330 0.93423 0.91666 0.91889 0.89122 0.89125 0.92207 0.94753 0.91913 0.92000 0.91764 0.92098 0.91143 0.91193 0.84437 0.89123 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.30 13.96 55.43 0.77 -24.53 16 2 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 3 Si 0.87 20.17 26.99 -169.99 -4.59 15.58 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.26 -5.81 6.82 56.52 0.39 -5.42 16 7 C -0.52 -13.93 9.23 -34.44 -0.32 -14.25 16 8 H 0.09 2.58 8.06 -52.49 -0.42 2.15 16 9 C 0.19 4.30 2.02 -27.88 -0.06 4.25 16 10 H 0.03 0.73 4.94 -51.93 -0.26 0.47 16 11 C -0.03 -0.69 6.31 37.15 0.23 -0.45 16 12 Cl -0.24 -4.46 26.16 -51.86 -1.36 -5.82 16 13 O -0.37 -8.19 9.52 -35.23 -0.34 -8.53 16 14 C 0.05 0.96 4.93 37.15 0.18 1.15 16 15 C -0.12 -1.77 2.57 -90.54 -0.23 -2.00 16 16 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 17 C -0.11 -1.42 5.29 -26.61 -0.14 -1.56 16 18 C -0.15 -1.63 6.08 -26.65 -0.16 -1.79 16 19 C 0.06 0.61 6.56 -3.84 -0.03 0.58 16 20 N -0.69 -8.98 6.87 -113.76 -0.78 -9.76 16 21 C 0.06 0.98 5.73 -3.78 -0.02 0.96 16 22 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 23 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 24 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 25 H 0.06 1.07 5.15 -51.93 -0.27 0.80 16 26 H 0.03 0.63 8.08 -51.93 -0.42 0.21 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.34 4.07 8.86 -39.29 -0.35 3.72 16 34 H 0.09 1.59 7.85 -51.93 -0.41 1.18 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 291.38 15.07 4.39 4.39 Total: -1.00 -27.59 291.38 -8.03 -35.62 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.50 Total: 4.01 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -0.64 Total: -10.97 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: -0.01 Total: -34.28 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -0.34 Total: -8.53 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.59 Total: 15.58 kcal Atomic # 17 Polarization: -4.46 SS G_CDS: -1.36 Total: -5.82 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.59 -8.03 -35.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217856400.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.897 kcal (2) G-P(sol) polarization free energy of solvation -27.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds