Wall clock time and date at job start Thu Apr 9 2020 12:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86798 * 119.99585 * 2 1 4 4 H 1.48502 * 109.47184 * 274.65097 * 3 2 1 5 5 H 1.48500 * 109.47531 * 34.65302 * 3 2 1 6 6 H 1.48500 * 109.47092 * 154.65516 * 3 2 1 7 7 C 1.39940 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00104 * 162.76059 * 7 2 1 9 9 C 1.41393 * 119.99880 * 342.76608 * 7 2 1 10 10 C 1.40728 * 120.24706 * 334.68697 * 9 7 2 11 11 C 1.37594 * 119.75128 * 179.97438 * 10 9 7 12 12 C 1.38660 * 120.24655 * 0.02562 * 11 10 9 13 13 C 1.38616 * 120.49951 * 359.68600 * 12 11 10 14 14 C 1.37642 * 120.24681 * 0.59203 * 13 12 11 15 15 C 1.50696 * 120.12829 * 179.70411 * 14 13 12 16 16 N 1.46898 * 109.47161 * 259.72765 * 15 14 13 17 17 C 1.47020 * 110.99758 * 46.31752 * 16 15 14 18 18 C 1.53103 * 109.25449 * 182.34957 * 17 16 15 19 19 O 1.43017 * 109.29158 * 303.22033 * 18 17 16 20 20 C 1.43008 * 113.74026 * 58.65091 * 19 18 17 21 21 C 1.47018 * 110.99964 * 169.99943 * 16 15 14 22 22 H 0.96998 * 120.00371 * 359.97438 * 1 2 3 23 23 H 1.08009 * 120.12532 * 359.95886 * 10 9 7 24 24 H 1.07998 * 119.88296 * 180.02562 * 11 10 9 25 25 H 1.07995 * 119.74989 * 179.97438 * 12 11 10 26 26 H 1.07999 * 119.87801 * 180.30371 * 13 12 11 27 27 H 1.09002 * 109.47286 * 139.72239 * 15 14 13 28 28 H 1.09008 * 109.47094 * 19.72592 * 15 14 13 29 29 H 1.09003 * 109.47076 * 62.43880 * 17 16 15 30 30 H 1.09002 * 109.54727 * 302.30733 * 17 16 15 31 31 H 1.08998 * 109.50153 * 183.26340 * 18 17 16 32 32 H 1.08998 * 109.50260 * 63.17303 * 18 17 16 33 33 H 1.08995 * 109.50947 * 61.26184 * 20 19 18 34 34 H 1.09004 * 109.50634 * 181.34955 * 20 19 18 35 35 H 1.08997 * 109.50370 * 57.67196 * 21 16 15 36 36 H 1.09000 * 109.50667 * 297.53901 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.3913 2.1033 -1.3955 5 1 1.4922 2.6223 0.7961 6 1 3.5854 1.4139 0.5993 7 6 2.0080 -1.2119 -0.0005 8 1 3.0516 -1.2328 -0.2777 9 6 1.3486 -2.4091 0.3617 10 6 0.2211 -2.3708 1.2029 11 6 -0.4130 -3.5420 1.5485 12 6 0.0553 -4.7568 1.0717 13 6 1.1615 -4.8060 0.2378 14 6 1.8149 -3.6475 -0.1164 15 6 3.0212 -3.7047 -1.0178 16 7 4.2426 -3.6004 -0.2084 17 6 4.1772 -4.4890 0.9611 18 6 5.4409 -4.3057 1.8057 19 8 6.5918 -4.5595 0.9955 20 6 6.6869 -3.7105 -0.1514 21 6 5.4364 -3.8886 -1.0166 22 1 -0.4850 0.8400 0.0004 23 1 -0.1451 -1.4256 1.5759 24 1 -1.2788 -3.5150 2.1935 25 1 -0.4483 -5.6712 1.3484 26 1 1.5148 -5.7574 -0.1318 27 1 2.9839 -2.8783 -1.7276 28 1 3.0247 -4.6500 -1.5606 29 1 4.1095 -5.5244 0.6273 30 1 3.3004 -4.2406 1.5592 31 1 5.4237 -5.0039 2.6425 32 1 5.4805 -3.2844 2.1845 33 1 6.7624 -2.6718 0.1698 34 1 7.5714 -3.9778 -0.7297 35 1 5.4780 -3.2019 -1.8621 36 1 5.3897 -4.9144 -1.3820 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057661069.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:20:09 Heat of formation + Delta-G solvation = -39.035238 kcal Electronic energy + Delta-G solvation = -18331.839754 eV Core-core repulsion = 15586.748529 eV Total energy + Delta-G solvation = -2745.091226 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.65354 -39.30761 -36.53957 -35.46344 -32.44648 -31.93910 -31.24930 -28.71963 -27.06611 -25.02328 -24.79224 -22.81086 -21.55904 -20.95565 -18.99346 -17.51764 -17.19833 -16.92456 -16.37741 -16.04248 -15.88161 -15.86814 -15.23743 -14.83757 -14.71569 -14.34437 -13.60693 -13.39856 -13.09253 -12.95698 -12.83780 -12.71518 -12.38392 -12.29980 -12.21129 -12.01765 -11.48742 -11.32954 -11.08249 -10.97560 -10.58725 -9.29847 -9.22606 -9.04834 -8.57274 -6.22530 0.99817 1.11920 1.40401 1.51124 1.57475 2.24278 2.78289 2.91028 3.11575 3.84834 4.00456 4.13099 4.15750 4.24824 4.32016 4.41178 4.51327 4.58877 4.68131 4.71926 4.77573 4.83148 4.90637 5.01729 5.04638 5.14788 5.28298 5.39945 5.55032 5.78927 5.99106 6.13674 6.15892 6.22588 6.28559 6.31896 6.47214 6.79803 7.06323 7.13752 8.39254 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.017588 B = 0.009416 C = 0.006854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.617785 B = 2972.987452 C = 4084.504749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.034 3.966 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.260 1.260 7 C -0.470 4.470 8 H 0.088 0.912 9 C 0.103 3.897 10 C -0.195 4.195 11 C -0.112 4.112 12 C -0.245 4.245 13 C -0.089 4.089 14 C -0.204 4.204 15 C 0.134 3.866 16 N -0.538 5.538 17 C 0.031 3.969 18 C 0.068 3.932 19 O -0.400 6.400 20 C 0.065 3.935 21 C 0.016 3.984 22 H 0.284 0.716 23 H 0.096 0.904 24 H 0.104 0.896 25 H 0.112 0.888 26 H 0.106 0.894 27 H 0.063 0.937 28 H 0.027 0.973 29 H 0.031 0.969 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.123 0.877 35 H 0.091 0.909 36 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.788 -4.193 -0.191 9.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.180 4.180 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.184 1.184 7 C -0.499 4.499 8 H 0.106 0.894 9 C 0.100 3.900 10 C -0.214 4.214 11 C -0.130 4.130 12 C -0.265 4.265 13 C -0.107 4.107 14 C -0.205 4.205 15 C 0.008 3.992 16 N -0.264 5.264 17 C -0.097 4.097 18 C -0.009 4.009 19 O -0.319 6.319 20 C -0.011 4.011 21 C -0.112 4.112 22 H 0.095 0.905 23 H 0.114 0.886 24 H 0.122 0.878 25 H 0.130 0.870 26 H 0.124 0.876 27 H 0.081 0.919 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.090 0.910 31 H 0.131 0.869 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.141 0.859 35 H 0.109 0.891 36 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 8.772 -3.693 -0.008 9.518 hybrid contribution -0.634 0.241 -0.372 0.773 sum 8.139 -3.452 -0.380 8.849 Atomic orbital electron populations 1.69901 1.08967 1.30144 1.36479 1.26730 0.95302 1.04381 0.91631 0.85339 0.79374 0.76750 0.79152 1.18953 1.19651 1.18353 1.19876 0.98431 0.91455 1.40182 0.89443 1.17688 0.90909 0.92701 0.88723 1.21334 1.00654 0.96771 1.02684 1.20928 0.98935 0.93277 0.99879 1.20650 1.01720 0.96664 1.07418 1.20673 0.95918 0.96328 0.97824 1.19739 1.01216 0.93291 1.06305 1.20506 0.86761 0.98419 0.93529 1.62228 1.02317 1.53099 1.08728 1.22608 0.99378 0.94077 0.93624 1.22703 0.83448 1.01645 0.93066 1.87897 1.44861 1.60543 1.38592 1.22781 0.97370 0.94570 0.86418 1.22858 0.90980 1.00145 0.97173 0.90534 0.88551 0.87824 0.86987 0.87608 0.91857 0.95467 0.95051 0.91038 0.86887 0.93039 0.92724 0.85937 0.89059 0.94390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.44 10.98 21.82 0.24 -43.20 16 2 C 0.03 1.69 5.15 85.26 0.44 2.13 16 3 Si 0.97 38.62 29.59 68.60 2.03 40.65 16 4 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 5 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 6 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 7 C -0.47 -24.58 8.19 23.46 0.19 -24.38 16 8 H 0.09 4.49 6.84 -2.91 -0.02 4.47 16 9 C 0.10 5.37 5.57 -21.29 -0.12 5.25 16 10 C -0.19 -10.28 8.69 22.73 0.20 -10.08 16 11 C -0.11 -5.23 10.02 22.22 0.22 -5.00 16 12 C -0.25 -10.59 10.05 22.46 0.23 -10.36 16 13 C -0.09 -3.81 8.72 22.22 0.19 -3.61 16 14 C -0.20 -9.41 3.76 -19.40 -0.07 -9.48 16 15 C 0.13 5.41 4.60 85.56 0.39 5.80 16 16 N -0.54 -19.66 4.61 -899.73 -4.14 -23.80 16 17 C 0.03 1.09 4.91 86.31 0.42 1.52 16 18 C 0.07 2.04 7.01 72.02 0.50 2.54 16 19 O -0.40 -11.83 10.83 -148.98 -1.61 -13.44 16 20 C 0.07 1.68 7.01 72.02 0.50 2.18 16 21 C 0.02 0.48 5.63 86.31 0.49 0.96 16 22 H 0.28 13.60 8.30 -92.71 -0.77 12.83 16 23 H 0.10 5.37 6.20 -2.91 -0.02 5.35 16 24 H 0.10 4.33 8.06 -2.91 -0.02 4.31 16 25 H 0.11 4.16 8.06 -2.91 -0.02 4.14 16 26 H 0.11 3.98 8.03 -2.91 -0.02 3.96 16 27 H 0.06 2.72 7.33 -2.39 -0.02 2.70 16 28 H 0.03 1.01 7.94 -2.38 -0.02 0.99 16 29 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 2.88 6.30 -2.39 -0.02 2.86 16 31 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 32 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.12 2.35 8.14 -2.38 -0.02 2.33 16 35 H 0.09 2.43 8.14 -2.39 -0.02 2.42 16 36 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -57.83 290.66 1.16 -56.67 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: 1.06 Total: 25.64 kcal Atomic # 6 Polarization: -46.12 SS G_CDS: 3.59 Total: -42.53 kcal Atomic # 7 Polarization: -63.09 SS G_CDS: -3.90 Total: -67.00 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -1.61 Total: -13.44 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Total: -57.83 1.16 -56.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057661069.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.638 kcal (2) G-P(sol) polarization free energy of solvation -57.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds