Wall clock time and date at job start Thu Apr 9 2020 12:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46897 * 109.47193 * 74.56933 * 3 2 1 5 5 C 1.46898 * 110.99982 * 71.18336 * 4 3 2 6 6 C 1.50700 * 109.47355 * 199.19533 * 5 4 3 7 7 H 1.08010 * 119.99852 * 1.35682 * 6 5 4 8 8 C 1.37870 * 120.00387 * 181.35272 * 6 5 4 9 9 N 1.31516 * 120.00206 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00472 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46681 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.47243 * 120.00147 * 10 8 6 13 13 H 1.48495 * 109.47498 * 240.00480 * 10 8 6 14 14 C 1.46901 * 111.00095 * 195.13813 * 4 3 2 15 15 C 1.50700 * 109.47350 * 66.04707 * 14 4 3 16 16 C 1.38245 * 119.97220 * 270.31918 * 15 14 4 17 17 C 1.38195 * 120.02356 * 180.27678 * 16 15 14 18 18 C 1.38458 * 119.97297 * 359.42723 * 17 16 15 19 19 F 1.35102 * 120.02588 * 180.30271 * 18 17 16 20 20 C 1.38458 * 119.94893 * 0.27219 * 18 17 16 21 21 C 1.38191 * 119.97465 * 0.02562 * 20 18 17 22 22 H 4.40881 * 5.52037 * 180.02562 * 4 1 2 23 23 H 1.09005 * 109.47160 * 314.57160 * 3 2 1 24 24 H 1.09000 * 109.47199 * 194.57409 * 3 2 1 25 25 H 1.09001 * 109.47148 * 319.19593 * 5 4 3 26 26 H 1.08995 * 109.47490 * 79.19362 * 5 4 3 27 27 H 0.96994 * 120.00709 * 179.97438 * 9 8 6 28 28 H 1.09001 * 109.47118 * 306.04156 * 14 4 3 29 29 H 1.08998 * 109.46955 * 186.05033 * 14 4 3 30 30 H 1.08002 * 119.99098 * 0.02562 * 16 15 14 31 31 H 1.08000 * 120.01202 * 179.69924 * 17 16 15 32 32 H 1.08004 * 120.01152 * 180.02562 * 20 18 17 33 33 H 1.08007 * 119.98518 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1358 -0.3676 -1.3350 5 6 2.8938 0.7123 -2.3010 6 6 2.9583 0.1580 -3.7009 7 1 3.1373 -0.8957 -3.8567 8 6 2.7888 0.9958 -4.7826 9 7 2.5713 2.2789 -4.5929 10 14 2.8696 0.3089 -6.5178 11 1 3.1241 -1.1531 -6.4600 12 1 1.5797 0.5594 -7.2099 13 1 3.9685 0.9740 -7.2629 14 6 4.5596 -0.7269 -1.2928 15 6 4.7360 -1.9874 -0.4860 16 6 4.9460 -1.9104 0.8783 17 6 5.1136 -3.0655 1.6183 18 6 5.0592 -4.3005 0.9948 19 9 5.2168 -5.4306 1.7182 20 6 4.8426 -4.3765 -0.3706 21 6 4.6815 -3.2199 -1.1096 22 1 -1.0499 0.0002 -0.0001 23 1 3.0097 -0.7204 0.7321 24 1 3.0089 0.9954 0.2586 25 1 1.9077 1.1424 -2.1256 26 1 3.6535 1.4845 -2.1806 27 1 2.4524 2.8685 -5.3539 28 1 5.1250 0.0824 -0.8308 29 1 4.9231 -0.8909 -2.3072 30 1 4.9832 -0.9472 1.3653 31 1 5.2825 -3.0049 2.6833 32 1 4.7996 -5.3394 -0.8580 33 1 4.5121 -3.2791 -2.1746 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065958499.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:20:22 Heat of formation + Delta-G solvation = 38.144112 kcal Electronic energy + Delta-G solvation = -16975.227816 eV Core-core repulsion = 14110.023034 eV Total energy + Delta-G solvation = -2865.204783 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.80942 -39.23057 -36.71509 -32.85961 -32.44990 -31.03660 -30.64449 -27.64743 -26.31654 -23.90418 -22.88786 -21.62902 -20.44536 -17.70265 -17.45486 -16.48350 -16.14292 -15.66812 -15.51975 -14.93407 -14.32458 -14.12556 -14.07795 -13.43765 -13.42640 -13.11999 -12.30573 -12.23048 -12.00322 -11.76575 -11.32502 -11.03422 -10.78486 -10.69821 -10.59695 -10.12898 -9.76444 -9.56805 -9.28106 -8.95159 -8.47684 -8.39374 -7.41221 -6.05194 -4.06831 1.26684 1.35911 3.29111 3.30916 3.37195 3.41665 3.43046 3.72945 4.35762 4.41260 4.82486 4.91120 4.94993 5.03130 5.27818 5.30903 5.41730 5.45141 5.81341 5.85966 5.96645 6.07321 6.13297 6.21651 6.37671 6.39806 6.46805 6.78023 7.02290 7.16156 7.24148 7.75198 7.99385 8.08259 8.22701 8.44660 9.00665 9.57467 11.05447 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.022154 B = 0.005969 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.605225 B = 4689.479418 C = 5455.172081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.154 4.154 3 C 0.150 3.850 4 N -0.526 5.526 5 C 0.191 3.809 6 C -0.505 4.505 7 H 0.064 0.936 8 C 0.055 3.945 9 N -0.898 5.898 10 Si 0.897 3.103 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.285 1.285 14 C 0.098 3.902 15 C -0.073 4.073 16 C -0.093 4.093 17 C -0.156 4.156 18 C 0.084 3.916 19 F -0.147 7.147 20 C -0.154 4.154 21 C -0.067 4.067 22 H 0.212 0.788 23 H 0.087 0.913 24 H 0.048 0.952 25 H 0.034 0.966 26 H -0.003 1.003 27 H 0.261 0.739 28 H 0.036 0.964 29 H 0.098 0.902 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.313 -8.310 10.480 14.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.154 4.154 3 C 0.023 3.977 4 N -0.251 5.251 5 C 0.067 3.933 6 C -0.543 4.543 7 H 0.083 0.917 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.725 3.275 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.211 1.211 14 C -0.030 4.030 15 C -0.074 4.074 16 C -0.112 4.112 17 C -0.175 4.175 18 C 0.065 3.935 19 F -0.126 7.126 20 C -0.173 4.173 21 C -0.086 4.086 22 H 0.228 0.772 23 H 0.105 0.895 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.015 0.985 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.117 0.883 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.047 -8.578 10.232 13.952 hybrid contribution 0.160 0.272 -0.592 0.670 sum 4.207 -8.306 9.640 13.403 Atomic orbital electron populations 1.24657 0.95722 1.02555 1.01256 1.22913 0.94260 0.98909 0.99338 1.19141 0.85433 0.99366 0.93776 1.62140 1.14422 1.43750 1.04747 1.19835 0.96628 0.86981 0.89888 1.21163 1.48350 0.95012 0.89812 0.91740 1.24984 0.95451 0.94790 0.99362 1.69963 1.49530 1.03439 1.30875 0.86460 0.77578 0.79184 0.84316 1.19627 1.21048 1.21101 1.21019 0.89917 0.91731 1.00317 1.20177 0.97470 0.96074 0.93660 1.20974 0.98825 0.97839 0.93553 1.21031 1.04598 0.91216 1.00664 1.17699 1.03973 0.82014 0.89861 1.91464 1.93361 1.49887 1.77892 1.21144 1.03824 1.00146 0.92213 1.21014 0.96102 0.90703 1.00773 0.77153 0.89518 0.93407 0.94779 0.98527 0.92956 0.94586 0.88331 0.85304 0.85211 0.85075 0.84516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.92 19.25 29.55 0.57 -3.35 16 2 C -0.15 -2.96 12.52 -37.12 -0.46 -3.42 16 3 C 0.15 2.70 5.29 -6.61 -0.04 2.67 16 4 N -0.53 -10.86 4.36 -241.04 -1.05 -11.91 16 5 C 0.19 4.83 4.59 -4.98 -0.02 4.81 16 6 C -0.50 -13.77 8.54 -34.44 -0.29 -14.06 16 7 H 0.06 1.74 7.79 -52.48 -0.41 1.33 16 8 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 9 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 10 Si 0.90 21.27 29.54 -169.99 -5.02 16.24 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 C 0.10 1.71 4.95 -4.98 -0.02 1.68 16 15 C -0.07 -1.09 4.94 -104.62 -0.52 -1.61 16 16 C -0.09 -1.21 7.84 -39.59 -0.31 -1.52 16 17 C -0.16 -1.93 10.03 -39.52 -0.40 -2.33 16 18 C 0.08 1.12 7.30 -39.42 -0.29 0.83 16 19 F -0.15 -1.99 17.27 2.25 0.04 -1.95 16 20 C -0.15 -2.03 10.03 -39.52 -0.40 -2.43 16 21 C -0.07 -0.97 9.70 -39.60 -0.38 -1.35 16 22 H 0.21 2.84 7.80 -54.10 -0.42 2.42 16 23 H 0.09 1.36 5.14 -51.93 -0.27 1.09 16 24 H 0.05 0.83 8.06 -51.93 -0.42 0.41 16 25 H 0.03 0.95 7.09 -51.93 -0.37 0.58 16 26 H 0.00 -0.08 8.01 -51.93 -0.42 -0.50 16 27 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.04 0.59 8.07 -51.93 -0.42 0.17 16 29 H 0.10 1.86 7.34 -51.93 -0.38 1.47 16 30 H 0.13 1.43 7.73 -52.49 -0.41 1.03 16 31 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.13 1.47 8.06 -52.48 -0.42 1.04 16 33 H 0.14 1.94 8.06 -52.48 -0.42 1.51 16 LS Contribution 295.69 15.07 4.46 4.46 Total: -1.00 -30.16 295.69 -7.41 -37.57 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -3.91 Total: -0.19 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: -2.66 Total: -18.64 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: -0.31 Total: -37.49 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.16 -7.41 -37.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065958499.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.713 kcal (2) G-P(sol) polarization free energy of solvation -30.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds