Wall clock time and date at job start Thu Apr 9 2020 12:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38386 * 119.93161 * 2 1 4 4 C 1.38338 * 120.29375 * 179.97438 * 3 2 1 5 5 C 1.37979 * 120.14357 * 0.27975 * 4 3 2 6 6 C 1.39556 * 119.85498 * 359.50911 * 5 4 3 7 7 C 1.47837 * 120.14515 * 180.25053 * 6 5 4 8 8 O 1.21558 * 120.00247 * 180.21325 * 7 6 5 9 9 N 1.34779 * 120.00431 * 0.21788 * 7 6 5 10 10 C 1.46494 * 120.00419 * 179.97438 * 9 7 6 11 11 C 1.52993 * 109.47239 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47569 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47609 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99703 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00306 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99424 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00027 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47095 * 90.00116 * 17 15 13 19 19 H 1.48505 * 109.46785 * 209.99978 * 17 15 13 20 20 H 1.48498 * 109.47415 * 329.99827 * 17 15 13 21 21 C 1.37933 * 119.92659 * 180.02562 * 2 1 3 22 22 H 1.09001 * 109.47089 * 89.99655 * 1 2 3 23 23 H 1.08997 * 109.47571 * 210.00569 * 1 2 3 24 24 H 1.09002 * 109.46906 * 330.00138 * 1 2 3 25 25 H 1.08001 * 119.85091 * 359.97438 * 3 2 1 26 26 H 1.08002 * 119.92371 * 179.97438 * 4 3 2 27 27 H 1.08004 * 120.06893 * 179.74088 * 5 4 3 28 28 H 0.97006 * 119.99299 * 359.97438 * 9 7 6 29 29 H 1.08995 * 109.47153 * 299.99913 * 10 9 7 30 30 H 1.09000 * 109.47252 * 59.99802 * 10 9 7 31 31 H 1.09003 * 109.46933 * 299.99815 * 11 10 9 32 32 H 1.08999 * 109.47482 * 60.00128 * 11 10 9 33 33 H 1.08995 * 109.47026 * 300.00172 * 12 11 10 34 34 H 1.09005 * 109.47216 * 59.99440 * 12 11 10 35 35 H 0.97002 * 119.99802 * 180.02562 * 16 15 13 36 36 H 1.08004 * 120.07676 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1993 0.0000 4 6 3.5808 1.2080 0.0005 5 6 4.2812 0.0192 -0.0048 6 6 3.5911 -1.1937 -0.0003 7 6 4.3351 -2.4712 -0.0003 8 8 3.7314 -3.5263 -0.0003 9 7 5.6829 -2.4662 -0.0002 10 6 6.4202 -3.7321 0.0003 11 6 7.9233 -3.4469 -0.0004 12 6 8.6934 -4.7690 0.0008 13 6 10.1739 -4.4880 -0.0004 14 1 10.5301 -3.4685 -0.0024 15 6 11.0739 -5.5326 -0.0002 16 7 10.6401 -6.7742 0.0017 17 14 12.9091 -5.1843 -0.0025 18 1 13.3969 -5.0904 1.3970 19 1 13.6207 -6.2841 -0.7021 20 1 13.1686 -3.9016 -0.7043 21 6 2.1951 -1.1954 -0.0005 22 1 -0.3633 0.0001 -1.0277 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6539 2.1325 -0.0004 26 1 4.1136 2.1474 0.0001 27 1 5.3612 0.0275 -0.0086 28 1 6.1647 -1.6243 -0.0005 29 1 6.1590 -4.3043 0.8905 30 1 6.1591 -4.3051 -0.8894 31 1 8.1842 -2.8749 -0.8908 32 1 8.1848 -2.8738 0.8892 33 1 8.4324 -5.3406 0.8914 34 1 8.4320 -5.3426 -0.8885 35 1 11.2732 -7.5091 0.0022 36 1 1.6551 -2.1308 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070940528.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:20:25 Heat of formation + Delta-G solvation = -37.849845 kcal Electronic energy + Delta-G solvation = -16552.011658 eV Core-core repulsion = 13806.971835 eV Total energy + Delta-G solvation = -2745.039823 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.20902 -38.49268 -35.44685 -33.58921 -32.93311 -31.51759 -30.86045 -27.37877 -26.65225 -24.20306 -22.55401 -22.02633 -20.69323 -19.77462 -17.63930 -16.45506 -16.25897 -15.78856 -15.32315 -14.90716 -14.58638 -14.38965 -14.16675 -13.71768 -13.69203 -13.16923 -12.51033 -12.28504 -12.23280 -11.89488 -11.76831 -11.69300 -11.29246 -10.91055 -10.73659 -10.60591 -9.95945 -9.87774 -9.40376 -9.19089 -9.12665 -8.98169 -8.75069 -8.37739 -6.02348 -4.05521 0.70666 1.12333 2.86591 3.30477 3.33416 3.37080 3.40183 3.74317 4.43763 4.51592 4.57827 4.65158 4.91171 5.03302 5.09966 5.31963 5.33458 5.36317 5.48244 5.68929 5.73189 5.76730 5.83349 6.12258 6.14908 6.15490 6.28482 6.45564 6.58595 6.66495 6.82166 6.98909 7.62877 7.67971 7.75389 7.96367 8.33610 8.38404 9.01141 9.58687 11.09001 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.054130 B = 0.003286 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.149899 B = 8519.479317 C = 9005.577380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.097 4.097 3 C -0.101 4.101 4 C -0.124 4.124 5 C -0.093 4.093 6 C -0.125 4.125 7 C 0.550 3.450 8 O -0.541 6.541 9 N -0.720 5.720 10 C 0.116 3.884 11 C -0.121 4.121 12 C 0.024 3.976 13 C -0.523 4.523 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.063 4.063 22 H 0.071 0.929 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.125 0.875 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.398 0.602 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.261 0.739 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.032 16.994 -0.028 24.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.097 4.097 3 C -0.119 4.119 4 C -0.142 4.142 5 C -0.112 4.112 6 C -0.128 4.128 7 C 0.337 3.663 8 O -0.420 6.420 9 N -0.371 5.371 10 C -0.007 4.007 11 C -0.159 4.159 12 C -0.014 4.014 13 C -0.561 4.561 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.082 4.082 22 H 0.090 0.910 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.143 0.857 26 H 0.146 0.854 27 H 0.145 0.855 28 H 0.232 0.768 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.071 0.929 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.372 16.016 -0.032 23.628 hybrid contribution 1.414 0.524 0.002 1.508 sum -15.958 16.540 -0.030 22.983 Atomic orbital electron populations 1.20799 0.90726 1.03000 1.02546 1.19914 0.96446 0.92826 1.00527 1.21229 0.94329 0.97601 0.98720 1.21091 0.94254 0.98028 1.00796 1.21360 1.00011 0.91822 0.97990 1.20071 0.94436 0.93200 1.05085 1.18301 0.82468 0.88671 0.76894 1.90766 1.68587 1.32526 1.50092 1.46148 1.05859 1.10843 1.74212 1.21689 0.92598 0.84200 1.02189 1.21898 0.90950 1.02167 1.00905 1.19030 0.94167 0.90491 0.97702 1.21201 0.91275 0.92657 1.50966 0.92641 1.25033 0.99063 0.95121 0.95269 1.69968 1.34476 0.98295 1.50538 0.86575 0.85304 0.77898 0.78099 1.20649 1.21196 1.19893 1.21185 0.92734 0.98396 0.95880 0.90998 0.91237 0.91431 0.85735 0.85372 0.85455 0.76751 0.91561 0.91566 0.92682 0.92688 0.96236 0.96232 0.92910 0.84672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.01 36.00 0.36 -0.41 16 2 C -0.10 -0.92 5.87 -104.68 -0.61 -1.53 16 3 C -0.10 -0.84 9.69 -39.49 -0.38 -1.22 16 4 C -0.12 -1.06 10.03 -39.64 -0.40 -1.46 16 5 C -0.09 -0.95 9.54 -39.19 -0.37 -1.33 16 6 C -0.12 -1.61 5.87 -104.97 -0.62 -2.23 16 7 C 0.55 8.82 7.77 -12.33 -0.10 8.72 16 8 O -0.54 -10.65 16.35 5.32 0.09 -10.56 16 9 N -0.72 -10.83 5.51 -61.26 -0.34 -11.17 16 10 C 0.12 2.08 5.67 -4.05 -0.02 2.06 16 11 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 12 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 13 C -0.52 -14.62 9.11 -34.44 -0.31 -14.94 16 14 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 17 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 C -0.06 -0.75 9.24 -39.18 -0.36 -1.11 16 22 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 24 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 25 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 26 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 27 H 0.13 1.07 6.41 -52.48 -0.34 0.73 16 28 H 0.40 4.81 6.51 -40.82 -0.27 4.55 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.14 1.65 7.65 -52.48 -0.40 1.25 16 LS Contribution 310.41 15.07 4.68 4.68 Total: -1.00 -32.76 310.41 -8.24 -41.00 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -5.19 Total: -0.27 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -3.20 Total: -13.99 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.40 Total: -37.34 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.76 -8.24 -41.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940528.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.149 kcal (2) G-P(sol) polarization free energy of solvation -32.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds