Wall clock time and date at job start Thu Apr 9 2020 12:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37979 * 120.07074 * 2 1 4 4 C 1.38343 * 120.14277 * 179.97438 * 3 2 1 5 5 C 1.38380 * 120.29263 * 0.02562 * 4 3 2 6 6 C 1.37942 * 120.14559 * 359.74761 * 5 4 3 7 7 C 1.39554 * 120.07192 * 179.97438 * 2 1 3 8 8 C 1.47839 * 120.14823 * 359.97438 * 7 2 1 9 9 O 1.21555 * 120.00030 * 353.99153 * 8 7 2 10 10 N 1.34774 * 120.00211 * 173.98860 * 8 7 2 11 11 C 1.46498 * 120.00011 * 179.72231 * 10 8 7 12 12 C 1.52999 * 109.47180 * 180.27694 * 11 10 8 13 13 C 1.53010 * 109.47187 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47097 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99657 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00154 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99992 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00400 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46946 * 59.99850 * 18 16 14 20 20 H 1.48494 * 109.47247 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46895 * 300.00408 * 18 16 14 22 22 H 1.08999 * 109.47239 * 263.47824 * 1 2 3 23 23 H 1.09003 * 109.46867 * 23.48063 * 1 2 3 24 24 H 1.09002 * 109.46814 * 143.47495 * 1 2 3 25 25 H 1.07996 * 119.93242 * 359.97438 * 3 2 1 26 26 H 1.07998 * 119.85291 * 180.02562 * 4 3 2 27 27 H 1.07996 * 119.92894 * 179.97438 * 5 4 3 28 28 H 1.07999 * 120.07765 * 180.27753 * 6 5 4 29 29 H 0.97002 * 119.99810 * 0.02562 * 10 8 7 30 30 H 1.08997 * 109.47453 * 300.27827 * 11 10 8 31 31 H 1.08999 * 109.46902 * 60.28073 * 11 10 8 32 32 H 1.08999 * 109.47438 * 300.00037 * 12 11 10 33 33 H 1.08999 * 109.46893 * 60.00373 * 12 11 10 34 34 H 1.08999 * 109.46777 * 300.00215 * 13 12 11 35 35 H 1.08997 * 109.46657 * 59.99958 * 13 12 11 36 36 H 0.96995 * 120.00154 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1941 0.0000 4 6 3.5819 1.1958 0.0005 5 6 4.2814 0.0018 0.0005 6 6 3.6023 -1.1989 0.0053 7 6 2.2063 -1.2077 0.0005 8 6 1.4721 -2.4908 0.0017 9 8 0.2616 -2.4983 0.1124 10 7 2.1448 -3.6523 -0.1200 11 6 1.4177 -4.9241 -0.1128 12 6 2.4099 -6.0797 -0.2579 13 6 1.6504 -7.4080 -0.2509 14 6 2.6277 -8.5462 -0.3945 15 1 3.6848 -8.3425 -0.4815 16 6 2.1724 -9.8473 -0.4147 17 7 0.8851 -10.0953 -0.3093 18 14 3.3838 -11.2582 -0.5919 19 1 4.3437 -11.2316 0.5408 20 1 2.6467 -12.5473 -0.5853 21 1 4.1241 -11.1172 -1.8715 22 1 -0.3634 -0.1167 1.0210 23 1 -0.3633 0.9426 -0.4095 24 1 -0.3633 -0.8259 -0.6117 25 1 1.6585 2.1294 -0.0004 26 1 4.1183 2.1332 0.0010 27 1 5.3613 0.0101 0.0005 28 1 4.1494 -2.1300 0.0098 29 1 3.1108 -3.6464 -0.2080 30 1 0.8750 -5.0271 0.8269 31 1 0.7126 -4.9443 -0.9437 32 1 2.9526 -5.9769 -1.1975 33 1 3.1150 -6.0596 0.5731 34 1 1.1074 -7.5111 0.6885 35 1 0.9456 -7.4278 -1.0821 36 1 0.5648 -11.0107 -0.3231 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070940547.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:20:26 Heat of formation + Delta-G solvation = -31.968682 kcal Electronic energy + Delta-G solvation = -16809.728009 eV Core-core repulsion = 14064.943213 eV Total energy + Delta-G solvation = -2744.784797 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.33960 -38.32360 -35.53285 -33.51203 -32.64910 -31.85138 -30.65412 -27.40262 -26.47420 -24.01844 -22.90979 -21.51025 -20.75186 -20.01912 -17.67783 -16.45351 -16.01861 -15.68805 -15.41391 -14.89550 -14.80515 -14.43130 -14.19637 -13.42341 -13.29706 -13.20032 -12.30994 -12.17692 -12.13930 -11.89178 -11.82957 -11.67836 -11.26743 -10.88944 -10.72918 -10.62461 -9.87593 -9.71906 -9.32983 -9.20429 -9.12949 -8.95970 -8.68181 -8.37560 -6.02266 -4.05605 0.73160 1.14842 2.90074 3.31714 3.35088 3.36714 3.39659 3.73398 4.43747 4.57953 4.65093 4.67711 4.85751 5.11179 5.25885 5.33392 5.46913 5.62699 5.67733 5.76368 5.77764 5.78996 6.07938 6.14541 6.16765 6.21102 6.39236 6.53914 6.58547 6.71177 6.82507 6.99071 7.62429 7.69218 7.75229 7.96236 8.34913 8.38921 9.00824 9.58603 11.09017 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.045129 B = 0.003573 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.291771 B = 7834.816119 C = 8420.553974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.024 4.024 3 C -0.134 4.134 4 C -0.095 4.095 5 C -0.137 4.137 6 C -0.082 4.082 7 C -0.136 4.136 8 C 0.550 3.450 9 O -0.535 6.535 10 N -0.721 5.721 11 C 0.116 3.884 12 C -0.122 4.122 13 C 0.024 3.976 14 C -0.524 4.524 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 H 0.075 0.925 23 H 0.055 0.945 24 H 0.097 0.903 25 H 0.127 0.873 26 H 0.125 0.875 27 H 0.127 0.873 28 H 0.128 0.872 29 H 0.397 0.603 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.417 22.030 0.427 22.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.025 4.025 3 C -0.152 4.152 4 C -0.113 4.113 5 C -0.155 4.155 6 C -0.101 4.101 7 C -0.139 4.139 8 C 0.337 3.663 9 O -0.414 6.414 10 N -0.372 5.372 11 C -0.006 4.006 12 C -0.160 4.160 13 C -0.013 4.013 14 C -0.562 4.562 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 H 0.094 0.906 23 H 0.074 0.926 24 H 0.116 0.884 25 H 0.145 0.855 26 H 0.143 0.857 27 H 0.145 0.855 28 H 0.145 0.855 29 H 0.232 0.768 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.401 21.827 0.507 22.272 hybrid contribution 1.246 -0.860 -0.107 1.518 sum 5.647 20.968 0.401 21.719 Atomic orbital electron populations 1.21102 0.89984 1.02971 1.03782 1.20099 0.96995 0.91498 0.93938 1.21066 0.94276 0.97477 1.02377 1.21329 0.94276 0.98246 0.97438 1.21077 1.00162 0.92198 1.02016 1.21360 0.93026 0.98721 0.97014 1.19934 0.93665 0.93546 1.06798 1.18279 0.87220 0.83760 0.77019 1.90716 1.13661 1.87191 1.49857 1.46165 1.10970 1.06423 1.73609 1.21675 0.95662 0.81146 1.02111 1.21901 0.97843 0.95407 1.00801 1.19024 0.95503 0.89133 0.97675 1.21168 0.93441 0.91102 1.50491 0.92694 1.25027 0.95147 0.98999 0.95265 1.69954 1.12923 1.20182 1.50229 0.86636 0.81105 0.81461 0.78657 1.20241 1.21262 1.20231 0.90649 0.92604 0.88427 0.85507 0.85731 0.85495 0.85463 0.76832 0.91597 0.91594 0.92704 0.92715 0.96250 0.96244 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.45 8.74 36.01 0.31 -1.13 16 2 C -0.02 -0.29 5.91 -104.22 -0.62 -0.91 16 3 C -0.13 -1.27 9.66 -39.64 -0.38 -1.65 16 4 C -0.09 -0.79 10.04 -39.49 -0.40 -1.19 16 5 C -0.14 -1.19 10.03 -39.64 -0.40 -1.59 16 6 C -0.08 -0.86 9.53 -39.18 -0.37 -1.23 16 7 C -0.14 -1.76 5.87 -104.97 -0.62 -2.38 16 8 C 0.55 8.59 7.70 -12.33 -0.10 8.49 16 9 O -0.54 -9.88 13.34 5.32 0.07 -9.81 16 10 N -0.72 -10.70 5.51 -61.25 -0.34 -11.03 16 11 C 0.12 2.07 5.67 -4.04 -0.02 2.04 16 12 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 13 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 14 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 15 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -26.85 13.29 55.43 0.74 -26.12 16 18 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.06 0.52 8.04 -51.93 -0.42 0.10 16 24 H 0.10 1.39 5.85 -51.93 -0.30 1.08 16 25 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 26 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 27 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 28 H 0.13 1.09 6.45 -52.49 -0.34 0.75 16 29 H 0.40 4.80 6.55 -40.82 -0.27 4.53 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 305.07 15.07 4.60 4.60 Total: -1.00 -31.95 305.07 -8.33 -40.28 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.10 Total: 0.62 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -3.28 Total: -14.99 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.40 Total: -37.15 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.07 Total: -9.81 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.95 -8.33 -40.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940547.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.312 kcal (2) G-P(sol) polarization free energy of solvation -31.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds